BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646094|ref|NP_208276.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(190 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224096.1| putative [Helicobacter pylori J99] 354 e-100
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 28 0.16
ref|NP_223520.1| putative [Helicobacter pylori J99] 27 0.27
ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 26 0.59
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 26 0.77
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 26 0.77
ref|NP_223138.1| putative [Helicobacter pylori J99] 26 0.77
ref|NP_224202.1| abc transporter, ATP-binding protein [Heli... 25 1.0
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 25 1.0
ref|NP_223617.1| putative [Helicobacter pylori J99] 25 1.0
ref|NP_222873.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 25 1.0
ref|NP_223253.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223787.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_223632.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_223386.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 23 5.0
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 23 5.0
ref|NP_223553.1| Hydrogenase expression/formation protein [... 23 5.0
ref|NP_223925.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 23 6.6
ref|NP_223555.1| Hydrogenase expression/formation protein [... 23 6.6
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 23 6.6
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 23 6.6
ref|NP_224082.1| putative TYPE II RESTRICTION ENZYME [Helic... 22 8.6
ref|NP_223543.1| putative [Helicobacter pylori J99] 22 8.6
ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pyl... 22 8.6
>ref|NP_224096.1| putative [Helicobacter pylori J99]
Length = 190
Score = 354 bits (909), Expect = e-100
Identities = 180/190 (94%), Positives = 188/190 (98%)
Query: 1 MKTLKNLITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITE 60
MKTLK+LITSKHQ KASRFLGYLMPFD+FEKTLLQLKKEHFKAAHFVTAFRYSLEGKITE
Sbjct: 1 MKTLKHLITSKHQIKASRFLGYLMPFDNFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITE 60
Query: 61 GFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVEN 120
GFSDDGEPKGSSGMP+LSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVEN
Sbjct: 61 GFSDDGEPKGSSGMPVLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVEN 120
Query: 121 AQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENL 180
AQ+E+A KDFVELETLSA+YSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTR++L
Sbjct: 121 AQRENAFKDFVELETLSAYYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRDDL 180
Query: 181 QAFLQQNKIN 190
QAFLQQNKIN
Sbjct: 181 QAFLQQNKIN 190
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 28.1 bits (61), Expect = 0.16
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 127 LKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRE 178
+KD VEL TL+ +++ ++L Q++ K L L NF QS + + T E
Sbjct: 280 VKDDVELNTLTKNFTNQKLSFAQKQ-KLCLLVLDSFNFDTQSKKSILKKTNE 330
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 27.3 bits (59), Expect = 0.27
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 142 YKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENLQAFLQQN 187
Y + ++ RE + LSKK+F N +++E+ + ++ + QN
Sbjct: 103 YLQYRSVLRENRLLKNHLSKKDFENSLLKIELRDLHKEIKLYQVQN 148
>ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 180
Score = 26.2 bits (56), Expect = 0.59
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 26 FDDFEKTLLQLK--KEHFKAAHFVTAFRYSLEGKITEGFSDDGE 67
F++F+ L L+ + +FKA F Y LEG++ S D E
Sbjct: 115 FEEFQLNSLHLEVMENNFKAIAFYEKNHYELEGRLKGFISKDKE 158
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 25.8 bits (55), Expect = 0.77
Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 17/103 (16%)
Query: 67 EPKGSSG-MPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKED 125
EP SG + L R+ L N+ L+ G M S +E KE
Sbjct: 913 EPLVKSGSLDNLGYTRKTMLANLDLICD---AGRAKDKANEMMQGGNSLFGAMEGGIKEQ 969
Query: 126 ALKDFVEL-------------ETLSAHYSYKELDALQREIKKF 155
+ D V+L ETL H S LD + EIK F
Sbjct: 970 VVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGF 1012
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 25.8 bits (55), Expect = 0.77
Identities = 24/88 (27%), Positives = 38/88 (42%), Gaps = 2/88 (2%)
Query: 4 LKNLITSKHQTKASRFLGYLMPFDD--FEKTLLQLKKEHFKAAHFVTAFRYSLEGKITEG 61
+KN+ + KA + + + DD FEK +L L++E K F S + EG
Sbjct: 205 VKNIKSDFIPKKAKQSIEVSVSCDDSEFEKKVLFLQEEIKKGEIFQAVLSRSFYMECLEG 264
Query: 62 FSDDGEPKGSSGMPMLSVLRREDLINIG 89
S K S+ P + ++ D I G
Sbjct: 265 LSAYYHLKLSNPSPYMFYIKDSDFILFG 292
>ref|NP_223138.1| putative [Helicobacter pylori J99]
Length = 495
Score = 25.8 bits (55), Expect = 0.77
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 94 RYFG-GTLLGVGGLMKAYAKSALLCVENAQK-EDALKDFVELETLSAHYSYKELDALQRE 151
+Y G G L V LMK Y +E K E + +F+ + AHY YK D + E
Sbjct: 137 KYLGDGFFLYVKWLMKRYPTERNRLLEMISKPESGVMNFLSV----AHYLYKNDDNIDHE 192
Query: 152 IKKFSLQLS 160
I + L+
Sbjct: 193 IYELQEMLT 201
>ref|NP_224202.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 327
Score = 25.4 bits (54), Expect = 1.0
Identities = 23/81 (28%), Positives = 35/81 (42%), Gaps = 5/81 (6%)
Query: 98 GTLLGVGGLMKAYAKSALL----CVENAQKEDALKDFVELETLSAHYSYKELDALQREIK 153
G +LGV G A KS L+ C+E + L + V L L K + +
Sbjct: 29 GDILGVIGYSGA-GKSTLIRLINCLERPSSGEVLVNGVNLLNLKPKELQKARQKIGMIFQ 87
Query: 154 KFSLQLSKKNFSNQSVEVEIS 174
F+L +K F N + +EI+
Sbjct: 88 HFNLLSAKNVFENVAFALEIA 108
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 25.4 bits (54), Expect = 1.0
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 143 KELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENLQAFLQQ 186
K+L+ L++E K L L +NF + + + RE+L+ L++
Sbjct: 817 KQLEKLEKE--KLKLNLHNENFVKNAPKSVLEKARESLKTLLEK 858
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 25.4 bits (54), Expect = 1.0
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 7/63 (11%)
Query: 126 ALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENLQAFLQ 185
+LKD ELE Y + ++ E+KK Q K++ SN++ E G R L
Sbjct: 110 SLKDIAELENEHEKYEREFNRIVEEEVKK---QKEKQSLSNRAKE----GIRNVGNKMLG 162
Query: 186 QNK 188
+NK
Sbjct: 163 RNK 165
>ref|NP_222873.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 225
Score = 25.4 bits (54), Expect = 1.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 131 VELETLSAHYSYKELDALQREIKKFSLQLSKKN--FSNQSVEVE 172
V+ ++ + K+LD + E + SL +SKK FS +S+ +E
Sbjct: 136 VDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSRESIAIE 179
>ref|NP_223253.1| putative [Helicobacter pylori J99]
Length = 329
Score = 24.6 bits (52), Expect = 1.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 1 MKTLKNLITSKHQTKASRFLGYLMPFDDFEKTLL 34
M+TL KH+ + ++LGY + FEK +L
Sbjct: 174 MQTLIGQSMKKHEALSKQWLGYYHKEEWFEKIIL 207
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 24.3 bits (51), Expect = 2.3
Identities = 12/41 (29%), Positives = 23/41 (55%)
Query: 144 ELDALQREIKKFSLQLSKKNFSNQSVEVEISGTRENLQAFL 184
E+DA++ IKK + Q++ N + + +E + +E FL
Sbjct: 389 EIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTWKFL 429
>ref|NP_223632.1| putative [Helicobacter pylori J99]
Length = 411
Score = 24.3 bits (51), Expect = 2.3
Identities = 16/60 (26%), Positives = 26/60 (42%), Gaps = 4/60 (6%)
Query: 105 GLMKAYAKSALLCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNF 164
GL K + L N + E +KDF+ + Y Y D ++R + S K++F
Sbjct: 142 GLGKLFVNKFL----NPKSEAPMKDFMSSKEFVKRYRYTSKDNMERTRQPKSFLNFKRDF 197
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 23.9 bits (50), Expect = 2.9
Identities = 18/70 (25%), Positives = 36/70 (50%), Gaps = 4/70 (5%)
Query: 115 LLCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEIS 174
L +E A+K ++D V + A + ++++ RE++ + L K+ Q + EIS
Sbjct: 269 LTIIEEAKKS-VIQDVVYRQMPPAKQALQDIN---REMEYLNKTLEKRRKEIQDLNKEIS 324
Query: 175 GTRENLQAFL 184
R +L+ F+
Sbjct: 325 QARIHLREFI 334
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 23.1 bits (48), Expect = 5.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 27 DDFEKTLLQLKKEHFK 42
+ F K LL L KEHFK
Sbjct: 487 EGFVKELLSLVKEHFK 502
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 23.1 bits (48), Expect = 5.0
Identities = 32/146 (21%), Positives = 55/146 (36%), Gaps = 11/146 (7%)
Query: 7 LITSKHQTKASRFLGYLMPFDDFEKTLLQLKKEHFKAAHFVTA-------FRYSLEGKIT 59
L +K K +LGY M LL K K + F+ + F L T
Sbjct: 298 LSVNKDPGKIPTYLGYAMLILGALWLLLDKKGRFLKLSRFLKSQQAASFLFALILVSPFT 357
Query: 60 EGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVE 119
F+++G+ G + + R+ + N + +L ++ Y+K L +
Sbjct: 358 SSFANEGQIDMHGGKS--AKIERQKIENPA--NKEDSKSAILERLKRLREYSKDHLKAFQ 413
Query: 120 NAQKEDALKDFVELETLSAHYSYKEL 145
Q +D L+T+S Y +K L
Sbjct: 414 RLQVQDFDGRIKPLDTISIEYIHKIL 439
>ref|NP_223553.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 370
Score = 23.1 bits (48), Expect = 5.0
Identities = 10/16 (62%), Positives = 13/16 (80%)
Query: 147 ALQREIKKFSLQLSKK 162
AL EIKKF+ +L+KK
Sbjct: 18 ALSNEIKKFASKLTKK 33
>ref|NP_223925.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 217
Score = 22.7 bits (47), Expect = 6.6
Identities = 13/62 (20%), Positives = 31/62 (49%), Gaps = 2/62 (3%)
Query: 117 CVENAQKE--DALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEIS 174
C E +E +A++D + E ++ +EL Q+E++ L+ K++++ +
Sbjct: 63 CDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFK 122
Query: 175 GT 176
G+
Sbjct: 123 GS 124
>ref|NP_223555.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 242
Score = 22.7 bits (47), Expect = 6.6
Identities = 7/19 (36%), Positives = 15/19 (78%)
Query: 27 DDFEKTLLQLKKEHFKAAH 45
+DF+ LL+ K+E++++ H
Sbjct: 222 EDFKNFLLEKKRENYQSTH 240
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 22.7 bits (47), Expect = 6.6
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 122 QKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSV 169
+ + A+K + + L + +A + ++K+ +L KKN N V
Sbjct: 472 KNDAAMKTYKQESLLVQKNANLSSEAKEEKLKELKTELDKKNLKNSVV 519
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 22.7 bits (47), Expect = 6.6
Identities = 15/51 (29%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
Query: 120 NAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVE 170
N K + K ++ L A + K LD E+K FS+ +K F S++
Sbjct: 235 NDPKHEYSKLLIQASNLPAK-NLKALDETLLEVKDFSVYYLQKRFFRPSLK 284
>ref|NP_224082.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 406
Score = 22.3 bits (46), Expect = 8.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 138 AHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISGT 176
AHY L+AL+R + ++ K F Q +++ + T
Sbjct: 312 AHYFTTLLNALKRPLLSVLVRDIDKTFREQKIQLPLKPT 350
>ref|NP_223543.1| putative [Helicobacter pylori J99]
Length = 100
Score = 22.3 bits (46), Expect = 8.6
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 148 LQREIKKFSLQLSKKNFSNQSVEVEI 173
L+ E+KK + KK+ NQ +E+E+
Sbjct: 2 LEIELKKKFTKDLKKHILNQKIELEV 27
>ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 612
Score = 22.3 bits (46), Expect = 8.6
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 39 EHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSVRYFGG 98
E FK A + G I G GE + P L R + + ++ Y GG
Sbjct: 125 ERFKGDELKHAVMSKISGDIF-GVYQQGEFEDLCKGPHLPNTRFLNHFKLTKLAGAYLGG 183
Query: 99 T--------LLGVGGLMKAYAKSALLCVENAQKEDALKDFVELETLS 137
+ G+ K K L +E A+K D K VEL S
Sbjct: 184 DENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKRDHRKLGVELGLFS 230
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.134 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,732
Number of Sequences: 1491
Number of extensions: 8474
Number of successful extensions: 48
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 26
length of query: 190
length of database: 494,079
effective HSP length: 73
effective length of query: 117
effective length of database: 385,236
effective search space: 45072612
effective search space used: 45072612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)