BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646101|ref|NP_208283.1| conserved hypothetical
nifU-like protein [Helicobacter pylori 26695]
(89 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224103.1| putative [Helicobacter pylori J99] 177 3e-47
ref|NP_222928.1| putative [Helicobacter pylori J99] 39 2e-05
ref|NP_223506.1| putative [Helicobacter pylori J99] 23 0.81
ref|NP_223959.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicoba... 22 3.1
ref|NP_223798.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_223787.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 21 5.3
ref|NP_224041.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacte... 20 6.9
ref|NP_223761.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 20 6.9
ref|NP_223531.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_222884.1| ELONGATION FACTOR P (EF-P) [Helicobacter p... 20 9.0
>ref|NP_224103.1| putative [Helicobacter pylori J99]
Length = 89
Score = 177 bits (450), Expect = 3e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60
MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK
Sbjct: 1 MIEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLK 60
Query: 61 NVIERQLKMDIHPNLEVVCLENAKEFDKL 89
NVIERQLKMDIHPNLEVVCLENAKEFDKL
Sbjct: 61 NVIERQLKMDIHPNLEVVCLENAKEFDKL 89
>ref|NP_222928.1| putative [Helicobacter pylori J99]
Length = 326
Score = 38.9 bits (89), Expect = 2e-05
Identities = 20/69 (28%), Positives = 37/69 (52%), Gaps = 4/69 (5%)
Query: 14 RIVIEKIRPYLLKDGGNIEVLGVKS----MKIYVALEGACKTCSSSKITLKNVIERQLKM 69
+++ E IR L+ DGG++E+L +K + +Y+ GAC C S+ IE L+
Sbjct: 256 KVIDENIRAMLMMDGGDLEILDIKESDDYIDVYIRYMGACDGCMSATTGTLFAIENALQE 315
Query: 70 DIHPNLEVV 78
+ ++ V+
Sbjct: 316 LLDRSIRVL 324
>ref|NP_223506.1| putative [Helicobacter pylori J99]
Length = 313
Score = 23.5 bits (49), Expect = 0.81
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 25 LKDGGNIEVLGVKSMKIYVALEGACKT---------CSSSKITLKNVIERQLKMDIHPNL 75
L G + L V+ + +AL+GA K SS KI ++ + D+HP L
Sbjct: 61 LNKGEELPFLKVQEKPVLIALKGAAKEPVLNIEKPGVSSVKIVHNKIMHER---DLHPFL 117
Query: 76 EVVCL--ENAKEFDK 88
+ EN K + K
Sbjct: 118 TYMAYYNENLKCYTK 132
>ref|NP_223959.1| putative [Helicobacter pylori J99]
Length = 376
Score = 22.3 bits (46), Expect = 1.8
Identities = 11/41 (26%), Positives = 20/41 (47%)
Query: 36 VKSMKIYVALEGACKTCSSSKITLKNVIERQLKMDIHPNLE 76
V + +Y L+ KT + L + +E+Q + + PN E
Sbjct: 214 VSAFYLYTQLKKELKTSKDTLYKLLHALEKQRIIFLAPNFE 254
>ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
Length = 493
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 9 LQKPVRIVIEKIRPYLLKDGGNIE 32
L+K +EKI+PY KD I+
Sbjct: 280 LEKAFCYSVEKIKPYAPKDSPLID 303
>ref|NP_223798.1| putative [Helicobacter pylori J99]
Length = 135
Score = 20.8 bits (42), Expect = 5.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 63 IERQLKMDIHPNLEVVCL 80
IE L++D H +EV C+
Sbjct: 61 IELLLELDSHSKVEVYCV 78
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 20.8 bits (42), Expect = 5.3
Identities = 11/30 (36%), Positives = 15/30 (49%)
Query: 56 KITLKNVIERQLKMDIHPNLEVVCLENAKE 85
K K I ++ + D H E+V LE KE
Sbjct: 184 KEKFKGKILKEFENDKHNQSEIVGLEKLKE 213
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 24 LLKDGGNIEVLGVKSMK 40
LLKDG I +GVK ++
Sbjct: 271 LLKDGARILGMGVKQIQ 287
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 20.4 bits (41), Expect = 6.9
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 23 YLLKDGGNIEVLGVKSMKIYVALEGACKTCSSSKITLKNVIERQ 66
YL++DG +EV K+ G + S +++ I +Q
Sbjct: 551 YLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQ 594
>ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 347
Score = 20.4 bits (41), Expect = 6.9
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 8 DLQKPVRIVIEKIRPYLLKD 27
++ +R V+E+++P L++D
Sbjct: 267 EISSALRSVLEEVKPDLVRD 286
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 20.4 bits (41), Expect = 6.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 14 RIVIEKIRPYLLKD 27
RI +EKI P KD
Sbjct: 1031 RIAVEKIEPSFAKD 1044
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 20.4 bits (41), Expect = 6.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 28 GGNIEVLGVKSMKI 41
GGNIEV G K+ ++
Sbjct: 295 GGNIEVKGSKAKEL 308
>ref|NP_223531.1| putative [Helicobacter pylori J99]
Length = 155
Score = 20.0 bits (40), Expect = 9.0
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 59 LKNVIERQLKMDIHPNLEVVCLENAK 84
+ N++++ +K + P + L N+K
Sbjct: 37 IPNILQKGVKEEDRPGYAAIILNNSK 62
>ref|NP_222884.1| ELONGATION FACTOR P (EF-P) [Helicobacter pylori J99]
Length = 187
Score = 20.0 bits (40), Expect = 9.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 16 VIEKIRPYLLKDGGNIEVLGVKS 38
++EK YL DG + + ++S
Sbjct: 66 LVEKTMQYLYHDGDTYQFMDIES 88
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.139 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,570
Number of Sequences: 1491
Number of extensions: 3291
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 89
length of database: 494,079
effective HSP length: 65
effective length of query: 24
effective length of database: 397,164
effective search space: 9531936
effective search space used: 9531936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)