BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646105|ref|NP_208287.1| general stress protein
(ctc) [Helicobacter pylori 26695]
(178 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224107.1| putative ribosomal protein L25 [Helicobact... 348 5e-98
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 29 0.083
ref|NP_223886.1| putative [Helicobacter pylori J99] 27 0.32
ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERA... 27 0.41
ref|NP_223560.1| putative [Helicobacter pylori J99] 26 0.54
ref|NP_223959.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 23 3.5
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 23 4.6
ref|NP_223667.1| putative [Helicobacter pylori J99] 23 4.6
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 22 7.8
ref|NP_223394.1| putative [Helicobacter pylori J99] 22 7.8
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 22 7.8
ref|NP_223100.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 22 7.8
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 22 7.8
ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori... 22 7.8
ref|NP_222867.1| putative [Helicobacter pylori J99] 22 7.8
>ref|NP_224107.1| putative ribosomal protein L25 [Helicobacter pylori J99]
Length = 178
Score = 348 bits (893), Expect = 5e-98
Identities = 174/178 (97%), Positives = 177/178 (98%)
Query: 1 MLEGVIRESITKANAKALKKDGYLIANVYGKGIENVNGAFKLNPFIKYLKEKKHLIFPVK 60
MLEGVIRESITKANAKALKKDGYLIAN+YGKG+ENVN AFKLNPFIKYLKEKKHLIFPVK
Sbjct: 1 MLEGVIRESITKANAKALKKDGYLIANIYGKGVENVNCAFKLNPFIKYLKEKKHLIFPVK 60
Query: 61 LGDKTFEVVVQEYQKNPVTNELIHVDLLAVTKGVKSKFKVPIKHQGTPVGLKNKGILMLS 120
LGDKTFEVVVQEYQKNPVTNELIHVDLLAVTKGVKSKFKVP+KHQGTPVGLKNKGILMLS
Sbjct: 61 LGDKTFEVVVQEYQKNPVTNELIHVDLLAVTKGVKSKFKVPVKHQGTPVGLKNKGILMLS 120
Query: 121 KKRISVECAPEHLPDHYLVDVAPLDVNESILVRDLEKHENVKILDHDSIAVIGVIKAK 178
KKRISVECAPEHLPDHYLVDVAPLDVNESILVRDLEKHENVKILDHDSIAVIGVIKAK
Sbjct: 121 KKRISVECAPEHLPDHYLVDVAPLDVNESILVRDLEKHENVKILDHDSIAVIGVIKAK 178
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 28.9 bits (63), Expect = 0.083
Identities = 20/72 (27%), Positives = 30/72 (40%), Gaps = 6/72 (8%)
Query: 9 SITKANAKALKKDGYLIANVYGKGIENVNGAFKLNP------FIKYLKEKKHLIFPVKLG 62
S K NA + K+ + + KGI + P +I ++KKH+I P G
Sbjct: 458 STIKRNAPSAYKEADFVKLLENKGIGRPSTYASYLPTLVKREYISISQDKKHIITPTHKG 517
Query: 63 DKTFEVVVQEYQ 74
+ EV YQ
Sbjct: 518 KRVVEVFENAYQ 529
>ref|NP_223886.1| putative [Helicobacter pylori J99]
Length = 340
Score = 26.9 bits (58), Expect = 0.32
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 42 LNPFIKYLKEKKHLIFPVKLGDK---------TFEVVVQEYQKNPVTNELIHV 85
+NPF+K L+ H + L + T E++V+ +QK+P+ +E I V
Sbjct: 94 INPFLKALERPSHNRLIIGLYNAKSDTTKYKYTSEIIVKFFQKSPLKDEAICV 146
>ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERASE-ISOMERASE
[Helicobacter pylori J99]
Length = 345
Score = 26.6 bits (57), Expect = 0.41
Identities = 13/47 (27%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Query: 40 FKLNPFIKYLKEKKHLIFPVKLGDKTF-EVVVQEYQKNPVTNELIHV 85
F N K LK+ KH + +G TF V ++ +++ + E++H+
Sbjct: 194 FSQNALEKLLKDFKHAFLTLHVGAGTFLSVETKDIREHQIHTEVLHI 240
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 26.2 bits (56), Expect = 0.54
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 83 IHVDLLAVTKGVKSKFKVPIKHQGTPVGLKNKGILMLSKKRISVECAPEHLPDHYLVDVA 142
IH + A+ G K++ K + P +L++K + AP+ P+H +
Sbjct: 8 IHTNANALNSGAKNEVK---DAKNAPKSASKDFSKILNQKISKDKTAPKESPNHSALKAT 64
Query: 143 PLDVNESILVRDLEK-----HENVKILDHDSIA 170
P D E + LEK H++ + L D A
Sbjct: 65 PKDAKED--AKALEKTPTLPHQHAQNLAKDQQA 95
>ref|NP_223959.1| putative [Helicobacter pylori J99]
Length = 376
Score = 25.0 bits (53), Expect = 1.2
Identities = 14/37 (37%), Positives = 22/37 (58%), Gaps = 1/37 (2%)
Query: 43 NPFIK-YLKEKKHLIFPVKLGDKTFEVVVQEYQKNPV 78
NP +K + +K L+ P+K G TF + + + KNPV
Sbjct: 37 NPLLKAHSSDKICLLGPMKSGKTTFALKLAKGFKNPV 73
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 23.5 bits (49), Expect = 3.5
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 158 HENVKILDHDSIAVIGVIKAK 178
HE++K+LD D + + +IK K
Sbjct: 302 HEHLKLLDDDKLLELTLIKDK 322
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 23.1 bits (48), Expect = 4.6
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 10/44 (22%)
Query: 140 DVAPLDVNESILVRDLE----------KHENVKILDHDSIAVIG 173
D+ PLD NE I ++++ K+ N+ I IA+IG
Sbjct: 355 DLVPLDFNEKITLQNISFAYKSKHPVLKNFNLTIQKGQKIALIG 398
>ref|NP_223667.1| putative [Helicobacter pylori J99]
Length = 227
Score = 23.1 bits (48), Expect = 4.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 31 KGIENVNGAFKLNPFIKYLKEKK 53
KG E V L P IK LKEKK
Sbjct: 62 KGSEWVFNESVLTPLIKELKEKK 84
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 22.3 bits (46), Expect = 7.8
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 29 YGKGIENVNGAFKLNPFIKYLKEKKHL 55
Y K E + GA++L P IK L E +
Sbjct: 498 YEKNGEFIEGAWELEPKIKELVESNEV 524
>ref|NP_223394.1| putative [Helicobacter pylori J99]
Length = 241
Score = 22.3 bits (46), Expect = 7.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 31 KGIENVNGAFKLNPFIKYLKEKKHLIFPVKLGDK 64
K +E + A +N F+K + +K H++F G K
Sbjct: 70 KVLETKDYANIINLFLKSVGKKAHVVFGHSFGGK 103
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 22.3 bits (46), Expect = 7.8
Identities = 13/57 (22%), Positives = 24/57 (41%), Gaps = 9/57 (15%)
Query: 50 KEKKHLIFPVKLGDKTFEVVVQEYQKNPVTNELIHVDLLAVTKGVKSKFKVPIKHQG 106
K+KKHL + G+ +++Y K A+ + K+ + +KH G
Sbjct: 454 KDKKHLALVAEFGNGELSYTLKDYGKKADK---------ALDREAKTTLQGSLKHDG 501
>ref|NP_223100.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 223
Score = 22.3 bits (46), Expect = 7.8
Identities = 10/36 (27%), Positives = 18/36 (49%)
Query: 49 LKEKKHLIFPVKLGDKTFEVVVQEYQKNPVTNELIH 84
+ +K L F ++ +K +VV NP + E +H
Sbjct: 50 VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVH 85
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 22.3 bits (46), Expect = 7.8
Identities = 9/41 (21%), Positives = 22/41 (52%)
Query: 68 VVVQEYQKNPVTNELIHVDLLAVTKGVKSKFKVPIKHQGTP 108
+++Q Q+N + +++ D + V K + ++ + QG P
Sbjct: 68 LILQHLQQNQIPYKVLKDDTILVPKDKVYEERITLASQGIP 108
>ref|NP_222891.1| LYSYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 501
Score = 22.3 bits (46), Expect = 7.8
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 32 GIENVNGAFKLNPFIKYLKEKKHLIFPVKLGDKTFEVVVQEY------QKNPVTNELIHV 85
G E NG +LN + L+ K+ + + GD+ + + ++Y + P + I +
Sbjct: 407 GKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHEMPPTAGQGIGI 466
Query: 86 D-LLAVTKGVKS 96
D L+ + G KS
Sbjct: 467 DRLVMLLTGAKS 478
>ref|NP_222867.1| putative [Helicobacter pylori J99]
Length = 318
Score = 22.3 bits (46), Expect = 7.8
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 78 VTNELIHVDLLAVTKGVKSKFKVPIKHQGTPVGLKNKGILMLSKKRISVECAPEHLPDHY 137
+ N L + L + + + SK + IK + L KG+LML + + E L +H
Sbjct: 28 IRNHLPEITLDYLNRQI-SKMQAEIKMAKSFFVLDAKGMLMLKPSQFKEQGHKEGLLEHD 86
Query: 138 LVDVAPLDVNES 149
L + L+ + S
Sbjct: 87 LTEGIELESHVS 98
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.139 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,383
Number of Sequences: 1491
Number of extensions: 9015
Number of successful extensions: 26
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 16
length of query: 178
length of database: 494,079
effective HSP length: 72
effective length of query: 106
effective length of database: 386,727
effective search space: 40993062
effective search space used: 40993062
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)