BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646106|ref|NP_208288.1| peptidyl-tRNA hydrolase
(pth) [Helicobacter pylori 26695]
(186 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224108.1| PEPTIDYL-TRNA HYDROLASE [Helicobacter pylo... 355 e-100
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 25 0.98
ref|NP_224173.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 25 1.3
ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter py... 25 1.3
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 25 1.7
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 24 2.2
ref|NP_223769.1| FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMER... 23 4.8
ref|NP_223117.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_223114.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 23 4.8
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 23 4.8
ref|NP_223787.1| putative [Helicobacter pylori J99] 23 6.3
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 23 6.3
ref|NP_224021.1| putative [Helicobacter pylori J99] 22 8.3
ref|NP_223853.1| ATP synthase F0, subunit c [Helicobacter p... 22 8.3
>ref|NP_224108.1| PEPTIDYL-TRNA HYDROLASE [Helicobacter pylori J99]
Length = 186
Score = 355 bits (910), Expect = e-100
Identities = 173/186 (93%), Positives = 177/186 (95%)
Query: 1 MTLLVGLGNPTLRYAHTRHNAGFDILDSLVSELDLSFTFSPKHNAFLCVYKDFIFLKPQT 60
MTLLVGLGNPTLRY HTRHNAGFDILDSLVSELDLSF FSPKHNA+LCVYKDFI LKPQT
Sbjct: 1 MTLLVGLGNPTLRYDHTRHNAGFDILDSLVSELDLSFIFSPKHNAYLCVYKDFILLKPQT 60
Query: 61 YMNLSGESVLSAKNFYKTKELLIVHDDLDLPLGVVRFKNGGGNGGHNGLKSIDLLCSNSY 120
YMNLSGESVLSAKNFYKTKELLIVHDDLDLPLGVV+FK GGGNGGHNGLKSID LCSNSY
Sbjct: 61 YMNLSGESVLSAKNFYKTKELLIVHDDLDLPLGVVKFKKGGGNGGHNGLKSIDALCSNSY 120
Query: 121 YRLRVGISKGIGVIEHVLSKFHKNEEPLKNAAFEHAKNALKFFIESHDFNAMQNRFTLKK 180
YRLRVGISKGI + EHVLSKFH NEEPLKNAAFEHAKNALKFFIESHDFNA QNRFTLKK
Sbjct: 121 YRLRVGISKGINITEHVLSKFHNNEEPLKNAAFEHAKNALKFFIESHDFNATQNRFTLKK 180
Query: 181 PLKIES 186
PL+IES
Sbjct: 181 PLQIES 186
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 25.4 bits (54), Expect = 0.98
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 138 LSKFHKNEEPLKNAAFEHAKNALKFFIESHDFNAMQ 173
L+ HK + + A F H KNA + ++ NAM+
Sbjct: 95 LNPLHKIGKQMSEAYFLHHKNASQVLLKEQVLNAMK 130
>ref|NP_224173.1| putative [Helicobacter pylori J99]
Length = 308
Score = 25.0 bits (53), Expect = 1.3
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 22 GFDILDSLVSELDLSFTFSPKHNAFLCVYKDFIFLKPQTYMNLSGESVLSAKNFYKTKEL 81
G L L++++D T + + NA L +DF L + Y L+ + K +EL
Sbjct: 43 GVGFLKFLIAKMD---TMTSERNAVL---RDFRGLYQKNY-------ALAKEIKNKREEL 89
Query: 82 LIVHDDLDLPLGVVRFKNGGGNGGH 106
IV + ++ K G GGH
Sbjct: 90 FIVGQKIRGLESLIEIKKGANGGGH 114
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 25.0 bits (53), Expect = 1.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 148 LKNAAFEHAKNALKFFIESHDFNAMQNRFTL 178
+KNA F H+ I HDF +++ F L
Sbjct: 857 VKNAPFAHSATPNLVAINQHDFGTIESVFEL 887
>ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter pylori J99]
Length = 234
Score = 25.0 bits (53), Expect = 1.3
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 34 DLSFTFSPKHNAFLCVYKDFIFLKPQTYMNLSGESVLSAKNFY 76
+L T P+H + V+ DF+ L P +++ + L A+N Y
Sbjct: 24 ELEKTLKPQHFDRVFVFPDFLGLLPNAFLHFT----LGAQNAY 62
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 24.6 bits (52), Expect = 1.7
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 155 HAKNALKFFIESHD---FNAMQNRFTLKKP 181
H+K LKF ++ HD FN + + L+ P
Sbjct: 285 HSKTELKFLLKDHDLEPFNLALDFYALENP 314
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 24.3 bits (51), Expect = 2.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 33 LDLSFTFSPK--HNAFLCVYKDFIFLKPQTYMNLSGESVLSAKNFYK 77
LD+++ S K N + + F LK + NLS E +L KN K
Sbjct: 627 LDINYDISAKIAENREYALNQIFSKLKAFDHQNLSEEELLGLKNILK 673
>ref|NP_223769.1| FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 185
Score = 23.1 bits (48), Expect = 4.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 101 GGNGGHNGLKSIDLLCSNSY 120
GG+GGH G K CS S+
Sbjct: 165 GGHGGHGGKKGGGCGCSCSH 184
>ref|NP_223117.1| putative [Helicobacter pylori J99]
Length = 391
Score = 23.1 bits (48), Expect = 4.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 154 EHAKNALKFFIESHDFNAMQNRFTLKKPLKIES 186
+H +K ++ HD+N + L+KPL + S
Sbjct: 340 KHLLPNVKDYLYPHDYNGYVKQDYLEKPLNLVS 372
>ref|NP_223114.1| putative [Helicobacter pylori J99]
Length = 178
Score = 23.1 bits (48), Expect = 4.8
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 102 GNGGHNGLKSIDLLCSNSYYRLRVGISKGIGVIEHVLSKFHKNE--EPLKNAAF------ 153
G+ GH K+ +L + Y L+ + KG + VL+ E PL++ F
Sbjct: 8 GSLGHLFKKTQELEILHGY--LQDVMQKGSEANQRVLNLAINTEFQVPLEHGIFSIEQSY 65
Query: 154 --EHAKNALKFFIESH 167
EHAK K F ESH
Sbjct: 66 CLEHAKEGEKGFFESH 81
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 23.1 bits (48), Expect = 4.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 153 FEHAKNALKFFIESHDFN 170
F+ A+NALK ++ DFN
Sbjct: 191 FDDAQNALKNLLKDDDFN 208
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 23.1 bits (48), Expect = 4.8
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 137 VLSKFHKNEEPLKNAAFEHAKNALKFFIESHDF 169
+LS F + L+N +H K L FF++++DF
Sbjct: 424 LLSPFCGDLSVLENE--KHFKETLNFFLKTYDF 454
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 22.7 bits (47), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (50%)
Query: 120 YYRLRVGISKGIGVIEHVLSKFHKNEEPLKNAAFEHAKN 158
Y + G+ KGI +E +S+ + + L+N E KN
Sbjct: 440 YNKKYCGLEKGINNLEKEISENQEKVKKLENEIKELEKN 478
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 22.7 bits (47), Expect = 6.3
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 29/99 (29%)
Query: 73 KNFYKTKE--LLIVHDDLDLPLGVVRFKNGGGNGGHNGLKSIDLLCSNSYYRLRVGISKG 130
K+ Y T E +L H D + V K G +GLKS ++GI KG
Sbjct: 109 KDVYATFENGILEFHFDEKARIAGVEIKGYGTEKEKDGLKS------------QMGIKKG 156
Query: 131 IGVIEHVLSKFHKNEEPLKNAAFEHAKNALKFFIESHDF 169
E L EHAK ALK +E +
Sbjct: 157 DTFDEQKL---------------EHAKTALKTALEGQGY 180
>ref|NP_224021.1| putative [Helicobacter pylori J99]
Length = 410
Score = 22.3 bits (46), Expect = 8.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 75 FYKTKELLIVHDDLD 89
F+K K+L + DDLD
Sbjct: 228 FFKDKDLSLAQDDLD 242
>ref|NP_223853.1| ATP synthase F0, subunit c [Helicobacter pylori J99]
Length = 105
Score = 22.3 bits (46), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 90 LPLGVVRFKNGGGNGGHNGLKSIDLL 115
L L V F + GG GG + +KS +L
Sbjct: 9 LALAGVAFAHDGGMGGMDMIKSYSIL 34
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.140 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,636
Number of Sequences: 1491
Number of extensions: 11013
Number of successful extensions: 47
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 16
length of query: 186
length of database: 494,079
effective HSP length: 73
effective length of query: 113
effective length of database: 385,236
effective search space: 43531668
effective search space used: 43531668
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)