BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646111|ref|NP_208293.1| hypothetical protein
[Helicobacter pylori 26695]
(145 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224113.1| putative [Helicobacter pylori J99] 282 3e-78
ref|NP_223003.1| 50S RIBOSOMAL PROTEIN L27 [Helicobacter py... 25 1.1
ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [He... 23 2.5
ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter ... 23 2.5
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 23 4.3
ref|NP_223426.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 22 7.3
ref|NP_223892.1| TRYPTOPHANYL-TRNA SYNTHETASE [Helicobacter... 22 7.3
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 22 7.3
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 22 7.3
ref|NP_222976.1| putative [Helicobacter pylori J99] 22 9.5
>ref|NP_224113.1| putative [Helicobacter pylori J99]
Length = 145
Score = 282 bits (721), Expect = 3e-78
Identities = 140/145 (96%), Positives = 140/145 (96%)
Query: 1 MDAIYPYVLVVHLLCAIIFIGYLFFDGVIFPNVKKMFGEEFANKANTGITQRAIKIMPLC 60
MDAIYPYVLVVHLLCAIIFIGYLFFD VIFPNVKKMFGEEFANKANTGI QRAIKIMPLC
Sbjct: 1 MDAIYPYVLVVHLLCAIIFIGYLFFDMVIFPNVKKMFGEEFANKANTGIAQRAIKIMPLC 60
Query: 61 VLGLVLTGGMMLSQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPI 120
VLGLVLTGGMMLSQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPI
Sbjct: 61 VLGLVLTGGMMLSQYMGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPI 120
Query: 121 GKYIHPIALTFGFLIAILAKTMWFV 145
GKY H IAL FGFLIAILAKTMWFV
Sbjct: 121 GKYTHHIALAFGFLIAILAKTMWFV 145
>ref|NP_223003.1| 50S RIBOSOMAL PROTEIN L27 [Helicobacter pylori J99]
Length = 88
Score = 24.6 bits (52), Expect = 1.1
Identities = 11/24 (45%), Positives = 12/24 (49%)
Query: 35 KMFGEEFANKANTGITQRAIKIMP 58
K FG EF N + QR KI P
Sbjct: 24 KKFGSEFVRAGNIIVRQRGTKIHP 47
>ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 331
Score = 23.5 bits (49), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 66 LTGGMMLSQYMGGDKGWC-ETPFQKILMLKVILALSIFLLVLFSL 109
L G ML Y W +TP +KI I ALS+F+ + L
Sbjct: 233 LDGAFMLKAY-----DWAFKTPLRKIYYNISITALSVFIALFIGL 272
>ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter pylori J99]
Length = 266
Score = 23.5 bits (49), Expect = 2.5
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 78 GDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPIGKYIHPIALTFGFLIAI 137
G K +TPF K + ++ +VL S+ F+G G ++ +AL F FLIA+
Sbjct: 146 GGKLLGKTPFTATSPNKTLEG-ALIGVVLASVLGSFVGMGKLSGGFL--MALLFSFLIAL 202
Query: 138 LA 139
+A
Sbjct: 203 MA 204
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 22.7 bits (47), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 99 LSIFLLVLFSLSCKFLGKKNPIGKYI 124
LS LL + S C FL + +GKY+
Sbjct: 269 LSGVLLFIVSYLCLFLADSSFLGKYL 294
>ref|NP_223426.1| putative [Helicobacter pylori J99]
Length = 245
Score = 22.3 bits (46), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 87 FQKILMLKVILALSIFLLVLFSL 109
+QKI KV+ + FLL LF++
Sbjct: 4 YQKIYTHKVVFSSLFFLLFLFNV 26
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 21.9 bits (45), Expect = 7.3
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 78 GDKGWCETPFQKILMLKVILALSIFLLVLFSLSCKFLGKKNPIGKYIHPIALTFGFL 134
G+ + E F+ + + + IF+L++F+L KN + L F FL
Sbjct: 848 GESQYLEEAFKTLQYIVPVSVFIIFILIVFAL-------KNLTNSLLCFFTLPFAFL 897
>ref|NP_223892.1| TRYPTOPHANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 326
Score = 21.9 bits (45), Expect = 7.3
Identities = 9/22 (40%), Positives = 12/22 (53%)
Query: 63 GLVLTGGMMLSQYMGGDKGWCE 84
G+ TG + L Y+G K W E
Sbjct: 9 GIQPTGQIHLGNYLGAIKHWVE 30
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 21.9 bits (45), Expect = 7.3
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 96 ILALSIFLLVLFSLSCKFLGKK 117
+L +IF VLF+++ K L KK
Sbjct: 361 MLMAAIFERVLFTIAIKMLNKK 382
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 265
Score = 21.9 bits (45), Expect = 7.3
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 20 IGYLFFDGVIFPNVKKMFGEEFANKANTGITQRAIKIMPL 59
IG++F D +FP++ FA+ + +++M L
Sbjct: 82 IGFVFQDYALFPHLNVYQNIAFAHPKDKNKIHEVLRLMRL 121
>ref|NP_222976.1| putative [Helicobacter pylori J99]
Length = 217
Score = 21.6 bits (44), Expect = 9.5
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 87 FQKILMLKVILALSIFLLVLFSLSCK 112
F+K ++LKV+ L+ +L L +CK
Sbjct: 6 FRKNIVLKVVPRLAFGVLWLLHKTCK 31
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.334 0.150 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,432
Number of Sequences: 1491
Number of extensions: 6178
Number of successful extensions: 41
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 11
length of query: 145
length of database: 494,079
effective HSP length: 70
effective length of query: 75
effective length of database: 389,709
effective search space: 29228175
effective search space used: 29228175
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 44 (21.6 bits)