BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646119|ref|NP_208301.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(117 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224121.1| DIHYDRONEOPTERIN ALDOLASE [Helicobacter py... 197 7e-53
ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylo... 31 0.011
ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pyl... 26 0.26
ref|NP_223659.1| putative [Helicobacter pylori J99] 26 0.26
ref|NP_222730.1| 60kDa chaperone [Helicobacter pylori J99] 26 0.26
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 26 0.34
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 26 0.34
ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobac... 26 0.34
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 26 0.34
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 25 0.75
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 0.99
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 24 0.99
ref|NP_223155.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 23 1.7
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 23 2.2
ref|NP_223205.1| cag island protein [Helicobacter pylori J99] 23 2.2
ref|NP_223131.1| DIHYDROOROTATE DEHYDROGENASE [Helicobacter... 23 2.2
ref|NP_223045.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 23 2.2
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 23 2.9
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 23 2.9
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 3.7
ref|NP_223903.1| putative NADH oxidoreductase I [Helicobact... 22 3.7
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 3.7
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 22 4.9
ref|NP_224062.1| putative [Helicobacter pylori J99] 22 4.9
ref|NP_223084.1| putative [Helicobacter pylori J99] 22 4.9
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 22 4.9
ref|NP_224180.1| putative [Helicobacter pylori J99] 22 6.4
ref|NP_223682.1| putative [Helicobacter pylori J99] 22 6.4
ref|NP_222912.1| putative [Helicobacter pylori J99] 22 6.4
ref|NP_223729.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 8.3
ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99] 21 8.3
ref|NP_222734.1| putative [Helicobacter pylori J99] 21 8.3
>ref|NP_224121.1| DIHYDRONEOPTERIN ALDOLASE [Helicobacter pylori J99]
Length = 117
Score = 197 bits (501), Expect = 7e-53
Identities = 99/117 (84%), Positives = 108/117 (91%)
Query: 1 MKTKQGVHIHNLVFEAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKM 60
MKTKQ VHIHNLVFE ILGILEFERLKPQKISV+LDLFYT+LPNK YLDYMEIQE+IQ
Sbjct: 1 MKTKQAVHIHNLVFETILGILEFERLKPQKISVDLDLFYTELPNKAYLDYMEIQEIIQNT 60
Query: 61 MQENQYLLIEDALKDLSHALKTRYKEITELYLKISKLEISPNSQVGASVKIRYESNL 117
M+E QYLLIEDALKDLS LKTRYK+I+EL+LKISKLEISPNSQVGAS+KI YE+NL
Sbjct: 61 MREKQYLLIEDALKDLSQILKTRYKKISELFLKISKLEISPNSQVGASMKIYYETNL 117
>ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylori J99]
Length = 449
Score = 30.8 bits (68), Expect = 0.011
Identities = 25/106 (23%), Positives = 47/106 (43%), Gaps = 23/106 (21%)
Query: 3 TKQGVHIHNLVFEAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKMMQ 62
+KQGV I ++ + L I E ER+K +K V + E+ +L+ K +
Sbjct: 171 SKQGVSISSVAVKEALSIFEKERIKDKKALV--------------IGLGEMAQLVIKHLL 216
Query: 63 ENQYLLI---------EDALKDLSHALKTRYKEITELYLKISKLEI 99
Q+ ++ ED +K+L K ++ + L I++ E+
Sbjct: 217 NKQFEVLILGRNAAKFEDFVKELEEPKKVGFQNVENLNAYINEYEL 262
>ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 442
Score = 26.2 bits (56), Expect = 0.26
Identities = 15/61 (24%), Positives = 29/61 (46%)
Query: 42 LPNKVYLDYMEIQELIQKMMQENQYLLIEDALKDLSHALKTRYKEITELYLKISKLEISP 101
L + D +E+ ++ Q + ++ LKD + LK +++ LY + L+IS
Sbjct: 206 LDSNTIKDLLEMVQIKQNDLSHAEFFEKIAYLKDYNENLKKGIQDLERLYQLLGDLQISQ 265
Query: 102 N 102
N
Sbjct: 266 N 266
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 26.2 bits (56), Expect = 0.26
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 52 EIQELIQKMMQENQYLLIEDALKDLSHALKTRYKEITELYLKISKLEISPNSQ 104
+++ L ++++ +N +LL+ ++ T+Y +T L LE+S + +
Sbjct: 394 KLKHLDKRLLDKNSHLLLAQLRNEVKTKQNTQYNTLTNPILLAKALELSKDKR 446
>ref|NP_222730.1| 60kDa chaperone [Helicobacter pylori J99]
Length = 546
Score = 26.2 bits (56), Expect = 0.26
Identities = 14/41 (34%), Positives = 23/41 (55%)
Query: 29 QKISVNLDLFYTQLPNKVYLDYMEIQELIQKMMQENQYLLI 69
+K++ LD Y L +K +I L++K M+E + LLI
Sbjct: 208 EKMTAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLI 248
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 25.8 bits (55), Expect = 0.34
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 15 EAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKMMQENQYLLIEDAL 73
+++LG LE LK +K + + NK+YL+ E I+ + + LIE+A+
Sbjct: 348 QSLLGFLEVA-LKLKKERLKKGFNFNSFENKLYLNEEGRIEKIETEKESGAHTLIEEAM 405
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 25.8 bits (55), Expect = 0.34
Identities = 13/42 (30%), Positives = 21/42 (49%)
Query: 19 GILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKM 60
GI E E K K+S++ Y +LP ++ L E++ M
Sbjct: 206 GIEESEMFKDDKLSLSFGSAYIELPFQIKLKRFELERYAGSM 247
>ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobacter pylori J99]
Length = 373
Score = 25.8 bits (55), Expect = 0.34
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 8 HIHNLVFEAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKMMQENQYL 67
H + E +LG LE+ R+K + + L F L + +Q +I+ + + +
Sbjct: 193 HSFGTIGENLLGFLEYHRIKEKDKIIKLSTFSKALASYGACVLAPLQ-VIEFLTNRAKSV 251
Query: 68 LIEDALKDLSHALKTRYKEITELYLKISKLEISPNSQV 105
+ AL L AL + E + K E+S + Q+
Sbjct: 252 IYTTALSLLDTALTLAHLEYFIAQKQELKNELSKHQQI 289
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 25.8 bits (55), Expect = 0.34
Identities = 20/65 (30%), Positives = 31/65 (46%), Gaps = 11/65 (16%)
Query: 48 LDYMEIQELIQKMMQENQYLLIEDALKDLSH-----------ALKTRYKEITELYLKISK 96
L+++ L + +QE LL + DLSH ALK R + + EL LKI +
Sbjct: 304 LNWLNAHYLKNQSVQELLKLLKPFSFSDLSHLNPAQLDRLLDALKERSQTLKELALKIDE 363
Query: 97 LEISP 101
+ +P
Sbjct: 364 VLTAP 368
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 24.6 bits (52), Expect = 0.75
Identities = 24/97 (24%), Positives = 40/97 (40%), Gaps = 13/97 (13%)
Query: 13 VFEAILGILEFERLKPQKISVNLDLFYTQLPNKVYL----------DYMEIQELIQKMMQ 62
V A+ + FER ++ + FY P ++ L + + IQ++
Sbjct: 325 VERALFSLFGFERTLELMQALEEEKFYALKPKELALLQEHFSCASCSDEDCLKTIQEVYA 384
Query: 63 ENQYLLIEDALKDLSHALKTRYKEI---TELYLKISK 96
E+QYL+ L+ +LKT K + T Y K K
Sbjct: 385 EHQYLIDPHTATALNASLKTHEKTLVSATASYEKFPK 421
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 24.3 bits (51), Expect = 0.99
Identities = 22/75 (29%), Positives = 36/75 (47%), Gaps = 6/75 (8%)
Query: 12 LVFEAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKMMQENQYLLIED 71
L+ ++LG++ FE+L K FYT Y+ I ++ + +Y + D
Sbjct: 433 LINPSVLGLV-FEKLNGYKEGS----FYTPSFITSYMCKESITTIVLDKFNQ-KYNIECD 486
Query: 72 ALKDLSHALKTRYKE 86
LK+L + LK YKE
Sbjct: 487 KLKELKNYLKNSYKE 501
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 24.3 bits (51), Expect = 0.99
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 58 QKMMQENQYLLIEDALKDLSHAL---KTRYKEITELYLKISKLE 98
QKM Q N+ +++ LK + L K R +++ + Y K+ ++
Sbjct: 217 QKMEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKLESIK 260
>ref|NP_223155.1| putative [Helicobacter pylori J99]
Length = 314
Score = 23.5 bits (49), Expect = 1.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 54 QELIQKMMQENQYLLI---EDALKDLSHALKTRYKEITELYLKISKLE 98
Q L K ++ YL+ DA D + K ++KE+ LK+ K E
Sbjct: 226 QHLKNKPIEYQMYLVFANQNDATNDTTALWKGKHKELLVGTLKVEKYE 273
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 23.5 bits (49), Expect = 1.7
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 13 VFEAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKMMQENQYLLIEDA 72
VF+A + + E ++ P I + + L N + + +I L +K MQ+ + + I+ A
Sbjct: 190 VFQAGVFLDELKKHAPT-ILKGCERAFESLENTHFFE-QKIARLSEKSMQDLEDMSIDIA 247
Query: 73 LKDLSHALK 81
L SH +K
Sbjct: 248 LMQQSHKIK 256
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 23.1 bits (48), Expect = 2.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 58 QKMMQENQYLLIEDALKDLSHALKTRYKEITELYLKISKL 97
Q +Q + L+E+ L+D L+ +E ELY S+L
Sbjct: 492 QVFIQSTETDLLENFLEDYEDFLQYELQERCELYPPFSRL 531
>ref|NP_223205.1| cag island protein [Helicobacter pylori J99]
Length = 237
Score = 23.1 bits (48), Expect = 2.2
Identities = 9/26 (34%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 44 NKVYLDYMEIQELIQKMMQEN--QYL 67
NKV+L+Y+E + +++ ++++ QYL
Sbjct: 201 NKVFLNYLEELDALERSLEQSKRQYL 226
>ref|NP_223131.1| DIHYDROOROTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 351
Score = 23.1 bits (48), Expect = 2.2
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 14 FEAILGILEFERLKPQKISVNLDL 37
+ AILG+ F R P K + ++L
Sbjct: 123 YGAILGVRAFNRFAPYKTPIGINL 146
>ref|NP_223045.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 343
Score = 23.1 bits (48), Expect = 2.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 74 KDLSHALKTRYKEITELYL 92
KDLS ALKT +++T+ +L
Sbjct: 269 KDLSLALKTSTQDLTDKFL 287
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 22.7 bits (47), Expect = 2.9
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 22 EFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKMMQENQYLLIEDALKDLSHALK 81
E ERL +K+ L + + + DY I +++ L LK++ H +
Sbjct: 275 ECERLDIEKVLEKLGML-----SGIIKDYGSIAHAKERLGHVKNEL---HNLKEIDHHCE 326
Query: 82 TRYKEITELYLKISKL 97
T +KEI L + KL
Sbjct: 327 TYHKEIERLKTECLKL 342
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 22.7 bits (47), Expect = 2.9
Identities = 8/27 (29%), Positives = 16/27 (58%)
Query: 33 VNLDLFYTQLPNKVYLDYMEIQELIQK 59
++ +LF+ PN+ +Y+ I E+ K
Sbjct: 295 IDKNLFFNDDPNRTLYNYLNIAEIEDK 321
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 22.3 bits (46), Expect = 3.7
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 5/56 (8%)
Query: 37 LFYTQLPNKVYLDYMEIQELIQKMMQENQYLLIEDALKDLSHALKTRYKEITELYL 92
L TQ PN+ +E + L K+++ ++ L+E+ SH YK I E L
Sbjct: 61 LLNTQYPNRRIPVLIEYKGLKDKLVKLDKNKLVENFKNHESH-----YKNIREYAL 111
>ref|NP_223903.1| putative NADH oxidoreductase I [Helicobacter pylori J99]
Length = 76
Score = 22.3 bits (46), Expect = 3.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 50 YMEIQELIQKMMQENQYLLIEDALKDLSHALKT 82
+ ++ELI+K MQ N+ + + D S+ K+
Sbjct: 14 FERLEELIEKEMQPNEVAIFMFEVGDFSNIPKS 46
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 22.3 bits (46), Expect = 3.7
Identities = 20/70 (28%), Positives = 29/70 (40%), Gaps = 3/70 (4%)
Query: 33 VNLDLFYTQLPNKVYLDYMEIQELIQKMMQENQ---YLLIEDALKDLSHALKTRYKEITE 89
V D Y QL + I +Q+++ Y I+DAL DL+ A E
Sbjct: 912 VKWDNLYFQLEQNNEMGIFLKPTKINSKVQDSRLKAYFKIKDALNDLTSAELNPLSSDLE 971
Query: 90 LYLKISKLEI 99
L K +KL +
Sbjct: 972 LENKRAKLNL 981
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 21.9 bits (45), Expect = 4.9
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 29 QKISVNLDLFYTQLPNKVYLDYMEIQELIQKMMQENQYLLIEDALKDLSHALKTRYKEI 87
++I +L +Y ++ + + +L + Q L DA+KD H L Y+E+
Sbjct: 275 EEIENDLKRYYEAQETAIFKKFPKFIQLYDNATSKIQALDF-DAIKDKVHVLLNGYEEM 332
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 21.9 bits (45), Expect = 4.9
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 33 VNLDLFYTQLPNKVYLD--------YMEIQELIQKMMQENQYLLIEDALKDLSHALKTRY 84
+NL Q+P+K +L+ + ++E ++++ +E+ + ++A + S +KT
Sbjct: 28 INLQYEVIQMPSKGFLNIGKKEAIILVGVKESVKEVKEESVKEIHQNAEEKQSLGIKTPQ 87
Query: 85 KEI 87
+EI
Sbjct: 88 EEI 90
>ref|NP_223084.1| putative [Helicobacter pylori J99]
Length = 160
Score = 21.9 bits (45), Expect = 4.9
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 44 NKVY-LDYMEIQELIQ-KMMQENQYLLIEDALKDLSHALKT 82
NKV L ++I+EL K+ EN+ I+D ++D +L+T
Sbjct: 72 NKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYKRSLET 112
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 21.9 bits (45), Expect = 4.9
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 15 EAILGILEFERLKPQKISVNLDLFYTQLPNKVYLDYMEIQELIQKMMQENQYLL-IEDAL 73
E + ILE E+L +I V L +L K M +++ + E+ Y + D L
Sbjct: 642 EILKTILELEKLGKDRIEVQHALMPFELQEKYKARNMRLEDEEVRARGEHLYSFNVHDLL 701
Query: 74 KDLSHALKTRYKE 86
+ LK + E
Sbjct: 702 DQHNANLKGEHHE 714
>ref|NP_224180.1| putative [Helicobacter pylori J99]
Length = 176
Score = 21.6 bits (44), Expect = 6.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 45 KVYLDYMEIQELIQKMMQENQYLLIEDALKDLSHALKTRYKEI 87
K + +Y E++ L++KM +E++ + + + L K+I
Sbjct: 110 KHHPNYCELEPLLEKMAKESENKAFYTSFRQHYNTLFNEVKQI 152
>ref|NP_223682.1| putative [Helicobacter pylori J99]
Length = 261
Score = 21.6 bits (44), Expect = 6.4
Identities = 11/30 (36%), Positives = 19/30 (62%)
Query: 71 DALKDLSHALKTRYKEITELYLKISKLEIS 100
+ALK L HALK + + + + + S L+I+
Sbjct: 142 EALKALYHALKIKGELVLDTLIIDSPLDIA 171
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 21.6 bits (44), Expect = 6.4
Identities = 17/63 (26%), Positives = 30/63 (46%), Gaps = 5/63 (7%)
Query: 33 VNLDLFYTQLPNKV--YLDYMEIQELIQKMMQENQYLLIEDALKDLS---HALKTRYKEI 87
+NL Y L + + Y D +++ EL+ + LL + +K LS +K Y+ I
Sbjct: 61 INLIASYNLLESFLDFYKDKLKLSELVTEYANVTNNLLFKKLIKHLSGNNQLVKNFYQCI 120
Query: 88 TEL 90
E+
Sbjct: 121 REI 123
>ref|NP_223729.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 320
Score = 21.2 bits (43), Expect = 8.3
Identities = 8/26 (30%), Positives = 15/26 (56%)
Query: 81 KTRYKEITELYLKISKLEISPNSQVG 106
K R+KE Y+K+ + ++ N + G
Sbjct: 202 KNRHKEPFSEYIKVFTVSLAKNRECG 227
>ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 218
Score = 21.2 bits (43), Expect = 8.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 49 DYMEIQELIQKMMQEN 64
DY E+Q +K +QEN
Sbjct: 166 DYDELQHFFEKGVQEN 181
>ref|NP_222734.1| putative [Helicobacter pylori J99]
Length = 275
Score = 21.2 bits (43), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 57 IQKMMQENQYLLIEDALKDLSHALKTRYKEITE 89
+Q ++ Q LL EDAL+ HA + +I E
Sbjct: 243 LQYSFEKIQNLLEEDALQTKEHANLSYVYQIVE 275
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.137 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,224
Number of Sequences: 1491
Number of extensions: 5519
Number of successful extensions: 46
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 33
length of query: 117
length of database: 494,079
effective HSP length: 67
effective length of query: 50
effective length of database: 394,182
effective search space: 19709100
effective search space used: 19709100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)