BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646120|ref|NP_208302.1| hypothetical protein
[Helicobacter pylori 26695]
         (108 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_224122.1|  putative [Helicobacter pylori J99]              197  4e-53
ref|NP_224123.1|  putative IRON-REGULATED OUTER MEMBRANE PRO...    49  3e-08
ref|NP_223569.1|  putative IRON-REGULATED OUTER MEMBRANE PRO...    45  6e-07
ref|NP_223528.1|  putative IRON-REGULATED OUTER MEMBRANE PRO...    43  2e-06
ref|NP_222944.1|  PROLYL-TRNA SYNTHETASE [Helicobacter pylor...    22  3.2
ref|NP_223707.1|  histidine kinase - MCP coupling protein [H...    22  4.1
ref|NP_223886.1|  putative [Helicobacter pylori J99]               21  7.0
ref|NP_223602.1|  ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [H...    21  9.2

>ref|NP_224122.1| putative [Helicobacter pylori J99]
          Length = 108

 Score =  197 bits (502), Expect = 4e-53
 Identities = 97/108 (89%), Positives = 103/108 (94%)

Query: 1   MKAIFSLFFLLIVLKANPINPLLEPLYFPSYAQFLNLAPHFVIKKKRAYRPFQWGNTIII 60
           MK IFSLFFLLIVLKA+PINPLLEPLYFPSY QFL+L PHFVIKKKRAYRPFQWGNTIII
Sbjct: 1   MKPIFSLFFLLIVLKAHPINPLLEPLYFPSYTQFLDLEPHFVIKKKRAYRPFQWGNTIII 60

Query: 61  KRHDLEERQSNQPSDIFRQNAEINVSSQTFLKGMSNASSRTVLDSAAQ 108
           KRHDLEERQSNQPSDIFRQNAEINVSSQTFL+G+S+ASSR V+DS AQ
Sbjct: 61  KRHDLEERQSNQPSDIFRQNAEINVSSQTFLRGISSASSRIVIDSVAQ 108



>ref|NP_224123.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
           J99]
          Length = 879

 Score = 48.9 bits (115), Expect = 3e-08
 Identities = 24/65 (36%), Positives = 40/65 (60%), Gaps = 6/65 (9%)

Query: 50  RPFQWGNTIIIKRHDLEERQSNQPSDIFRQNAEINVSS------QTFLKGMSNASSRTVL 103
           R F++ N + I R +L++RQSNQ  DIFR  A++NV+S      + +++G+ +   R  +
Sbjct: 37  RTFEYNNKMYIDRKELQQRQSNQIRDIFRTRADVNVASGGLMAQKIYVRGIESRLLRVTI 96

Query: 104 DSAAQ 108
           D  AQ
Sbjct: 97  DGVAQ 101



>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
           J99]
          Length = 815

 Score = 44.7 bits (104), Expect = 6e-07
 Identities = 23/68 (33%), Positives = 39/68 (56%), Gaps = 6/68 (8%)

Query: 47  RAYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQNAEINV------SSQTFLKGMSNASSR 100
           +A + F + N   I   +LE RQ+NQ SD+FR+N  INV      + + +++G+ +  +R
Sbjct: 56  QAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLAR 115

Query: 101 TVLDSAAQ 108
             +D  AQ
Sbjct: 116 VTVDGVAQ 123



>ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
           J99]
          Length = 791

 Score = 42.7 bits (99), Expect = 2e-06
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 47  RAYRPFQWGNTIIIKRHDLEERQSNQPSDIFRQNAEINV------SSQTFLKGMSNASSR 100
           +A R F + N   +   +L++RQSN+  D+FR N ++NV        + +++G+ +   R
Sbjct: 35  QAKRIFTYNNEFKVTSKELDQRQSNEVKDLFRTNPDVNVGGGSVMGQKIYVRGIEDRLLR 94

Query: 101 TVLDSAAQ 108
             +D AAQ
Sbjct: 95  VTVDGAAQ 102



>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
          Length = 576

 Score = 22.3 bits (46), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 29  PSYAQFLNLAPHFVIK 44
           PS A+F    P+FV+K
Sbjct: 263 PSVAEFFKTEPYFVLK 278



>ref|NP_223707.1| histidine kinase - MCP coupling protein [Helicobacter pylori J99]
          Length = 165

 Score = 21.9 bits (45), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (62%)

Query: 70 SNQPSDIFRQNAEINVSSQ 88
          SNQ  D+F +  E N SS+
Sbjct: 2  SNQLKDLFERQKEANASSK 20



>ref|NP_223886.1| putative [Helicobacter pylori J99]
          Length = 340

 Score = 21.2 bits (43), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 15  KANPINPLLEPLYFPSYAQFL 35
           K N INP L+ L  PS+ + +
Sbjct: 90  KENDINPFLKALERPSHNRLI 110



>ref|NP_223602.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [Helicobacter pylori J99]
          Length = 289

 Score = 20.8 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 13/18 (71%)

Query: 67  ERQSNQPSDIFRQNAEIN 84
           E+++N+PS +    A+IN
Sbjct: 103 EKRTNRPSSVISGEAKIN 120



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.323    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,462
Number of Sequences: 1491
Number of extensions: 4055
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 494,079
effective HSP length: 66
effective length of query: 42
effective length of database: 395,673
effective search space: 16618266
effective search space used: 16618266
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 42 (20.8 bits)