BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644648|ref|NP_206817.1| hypothetical protein
[Helicobacter pylori 26695]
(93 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222735.1| putative [Helicobacter pylori J99] 188 2e-50
ref|NP_223873.1| putative [Helicobacter pylori J99] 25 0.21
ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicoba... 25 0.36
ref|NP_222858.1| putative [Helicobacter pylori J99] 23 0.80
ref|NP_223798.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223655.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223357.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicoba... 22 1.8
ref|NP_223259.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 22 2.3
ref|NP_224065.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori ... 22 3.0
ref|NP_223475.1| putative osmoprotection binding protein [H... 22 3.0
ref|NP_223472.1| putative osmoprotection binding protein [H... 22 3.0
ref|NP_223236.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_223592.1| putative AMINO ACID ABC TRANSPORTER, PERME... 21 5.2
ref|NP_223168.1| putative transporter [Helicobacter pylori ... 21 5.2
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 21 5.2
ref|NP_224155.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_223518.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIP... 20 6.8
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 20 6.8
ref|NP_223104.1| putative [Helicobacter pylori J99] 20 6.8
ref|NP_224098.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 20 8.9
ref|NP_223296.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_223196.1| cag island protein [Helicobacter pylori J99] 20 8.9
ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [He... 20 8.9
ref|NP_222749.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_222742.1| putative [Helicobacter pylori J99] 20 8.9
>ref|NP_222735.1| putative [Helicobacter pylori J99]
Length = 93
Score = 188 bits (477), Expect = 2e-50
Identities = 92/93 (98%), Positives = 93/93 (99%)
Query: 1 MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLD 60
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLD
Sbjct: 1 MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLD 60
Query: 61 RWKEILFTILGVVFGIFLFFKAPSLANWFMGIF 93
RWKEILFTILGVVFGIFLFFKAPSLANWFMG+F
Sbjct: 61 RWKEILFTILGVVFGIFLFFKAPSLANWFMGVF 93
>ref|NP_223873.1| putative [Helicobacter pylori J99]
Length = 298
Score = 25.4 bits (54), Expect = 0.21
Identities = 18/54 (33%), Positives = 25/54 (45%), Gaps = 4/54 (7%)
Query: 39 IAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKAPSLANWFMGI 92
I GIL IF+ +A R+L + + IL FG+ L LA F+ I
Sbjct: 152 IIMGILSGIFVSLAYITLRDLREYYDKQAVILAFAFGMSLL----GLAGMFIDI 201
>ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 425
Score = 24.6 bits (52), Expect = 0.36
Identities = 15/62 (24%), Positives = 28/62 (44%), Gaps = 11/62 (17%)
Query: 33 AQLKSPIAKGILMVIFIGIAIYVWRNLD-RWKEILF----------TILGVVFGIFLFFK 81
A LK+P + F+G ++ W L R+ + + + GV+F + L+F+
Sbjct: 52 AFLKTPRNSAFALGFFVGALLFYWCALSFRYSDFTYLLPLIIVLVALVYGVLFYLLLYFE 111
Query: 82 AP 83
P
Sbjct: 112 NP 113
>ref|NP_222858.1| putative [Helicobacter pylori J99]
Length = 197
Score = 23.5 bits (49), Expect = 0.80
Identities = 11/37 (29%), Positives = 19/37 (50%), Gaps = 9/37 (24%)
Query: 46 VIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKA 82
V F+ + IY+ +L T+LG G++ F K+
Sbjct: 170 VTFVKVVIYI---------LLLTLLGAFLGLYFFKKS 197
>ref|NP_223798.1| putative [Helicobacter pylori J99]
Length = 135
Score = 23.1 bits (48), Expect = 1.0
Identities = 12/43 (27%), Positives = 23/43 (52%)
Query: 4 HFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMV 46
+FLK L ++ + E ++ F+ L Q SP+A +++V
Sbjct: 3 YFLKAPILGFEHINEVRLEKIDSLFSRLMGQTNSPMALDMVLV 45
>ref|NP_223655.1| putative [Helicobacter pylori J99]
Length = 416
Score = 23.1 bits (48), Expect = 1.0
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 7 KIVFLVGMCVSSLFAEG 23
K+VF + +C S+FAEG
Sbjct: 3 KLVFSMLLCCKSVFAEG 19
>ref|NP_223357.1| putative [Helicobacter pylori J99]
Length = 342
Score = 23.1 bits (48), Expect = 1.0
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 62 WKEILFTILGVVFGIFLFFKAPSL 85
W ++ ++ V+ G+F+FF + S+
Sbjct: 8 WMVVIGALICVLLGVFIFFTSMSV 31
>ref|NP_223395.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
Length = 493
Score = 22.3 bits (46), Expect = 1.8
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 61 RWKEILFTILGVVFGIFLFFKAPSLANWFMGI 92
RW I F + VF + FK P + ++F G+
Sbjct: 45 RWHGIYFLLPLGVFILSYAFKMPFVFDFFCGV 76
>ref|NP_223259.1| putative [Helicobacter pylori J99]
Length = 54
Score = 21.9 bits (45), Expect = 2.3
Identities = 12/29 (41%), Positives = 14/29 (47%), Gaps = 1/29 (3%)
Query: 64 EILFTILGVVFGIFLFFKAPSLANWFMGI 92
E L IL + I + FK P NW GI
Sbjct: 2 EFLGLILSLA-AILIAFKKPEKENWAFGI 29
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 21.9 bits (45), Expect = 2.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 34 QLKSPIAKGILMVIFIGIAIYVWR 57
+LK + +G MV+F GI++Y R
Sbjct: 64 RLKFALKEGQEMVVFGGISVYAPR 87
>ref|NP_224065.1| putative [Helicobacter pylori J99]
Length = 303
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 18 SLFAEGLEGFFNALEAQ---LKSPIAKGILM 45
+LF +GL +NAL Q L + KG+ +
Sbjct: 122 NLFLQGLRDKYNALYGQFSTLMPKVCKGVFL 152
>ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori J99]
Length = 292
Score = 21.6 bits (44), Expect = 3.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 25 EGFFNALEAQLKSPIAKGILMVI 47
E F ++ LK+P KG+L++I
Sbjct: 63 EDFDKEVDKILKTPSIKGVLLLI 85
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 21.6 bits (44), Expect = 3.0
Identities = 6/22 (27%), Positives = 15/22 (67%)
Query: 65 ILFTILGVVFGIFLFFKAPSLA 86
++ + GV+ G+F+F+ + + A
Sbjct: 69 LIVLVFGVLIGVFVFYNSKARA 90
>ref|NP_223472.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 161
Score = 21.6 bits (44), Expect = 3.0
Identities = 6/22 (27%), Positives = 15/22 (67%)
Query: 65 ILFTILGVVFGIFLFFKAPSLA 86
++ + GV+ G+F+F+ + + A
Sbjct: 69 LIVLVFGVLIGVFVFYNSKARA 90
>ref|NP_223236.1| putative [Helicobacter pylori J99]
Length = 192
Score = 21.2 bits (43), Expect = 4.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 25 EGFFNALEAQLKSPIAKGILMVIFIGIAIYVWR 57
E +ALE K P A +L+V F+ + ++ ++
Sbjct: 153 EELLHALEWLKKHPYALILLLVSFLALVLWYFQ 185
>ref|NP_223592.1| putative AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter
pylori J99]
Length = 237
Score = 20.8 bits (42), Expect = 5.2
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 38 PIAKGILMVIFIGIAIYVWRNL---------DRWKEILFTILGVV--FGIFLFFKA---- 82
PI GI+ F + Y L D+W L L + F +FF+A
Sbjct: 109 PIPAGIIAFSF-NVGAYASETLRASFLSVPKDQWDSSLSLGLNYLQTFWHVIFFQALKVA 167
Query: 83 -PSLANWFMGIF 93
PSL+N F+ +F
Sbjct: 168 TPSLSNTFISLF 179
>ref|NP_223168.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/12 (66%), Positives = 10/12 (82%)
Query: 43 ILMVIFIGIAIY 54
+L VIFIG+ IY
Sbjct: 173 LLFVIFIGLLIY 184
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/30 (36%), Positives = 19/30 (62%), Gaps = 1/30 (3%)
Query: 6 LKIVFLVGMCVSSLFAEGLEGFFNALEAQL 35
+K L+ + VSSLFAE +G + ++ Q+
Sbjct: 1 MKKTILLSLMVSSLFAEN-DGVYMSVGYQI 29
>ref|NP_224155.1| putative [Helicobacter pylori J99]
Length = 256
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/19 (47%), Positives = 12/19 (62%)
Query: 46 VIFIGIAIYVWRNLDRWKE 64
+IF GI IY +N R K+
Sbjct: 33 LIFSGITIYTDKNFTRAKK 51
>ref|NP_223518.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR)
[Helicobacter pylori J99]
Length = 164
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 58 NLDRWKEILFTILGVV 73
NLD KE +TI+G V
Sbjct: 95 NLDNDKEFSYTIVGSV 110
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 20.4 bits (41), Expect = 6.8
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 10 FLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFI 49
F+ G+ V A G GF+ + + + G+ FI
Sbjct: 2954 FVRGVIVGGYAAYGYSGFYERITSSKSDNVDVGLYARAFI 2993
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 59 LDRWKEILFTILGVVFGIFLFFK 81
L +K+ L +L +V +FLFF+
Sbjct: 20 LTSFKKPLTQVLLIVLMVFLFFR 42
>ref|NP_224098.1| putative [Helicobacter pylori J99]
Length = 365
Score = 20.0 bits (40), Expect = 8.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 6 LKIVFLVGMCVSSLFAEGLEGFFNAL 31
L I + +CV S + G+ +FN +
Sbjct: 211 LLISIVANVCVFSFWGMGMAFYFNLI 236
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 20.0 bits (40), Expect = 8.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 24 LEGFFNALEAQLKSPIAKGILMVIFIGIA 52
LE E L + + +LMV F+G+A
Sbjct: 847 LECAIEVKEKALCENLVEELLMVSFVGVA 875
>ref|NP_223296.1| putative [Helicobacter pylori J99]
Length = 512
Score = 20.0 bits (40), Expect = 8.9
Identities = 11/41 (26%), Positives = 20/41 (47%)
Query: 39 IAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLF 79
++ GIL + + ++W N+ + TI G FG +F
Sbjct: 449 LSLGILDSLAEFLGNFIWDNVQNFSVQEVTIAGDFFGEKVF 489
>ref|NP_223196.1| cag island protein [Helicobacter pylori J99]
Length = 535
Score = 20.0 bits (40), Expect = 8.9
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 69 ILGVVFGIFLFFKAPSLANWFMGI 92
++ +VFGIF+F L + GI
Sbjct: 255 LIYIVFGIFVFISFMKLRDISNGI 278
>ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 331
Score = 20.0 bits (40), Expect = 8.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 4 HFLKIVFLVGMCVSSLFAEGLEGFFNA 30
+FL IVFL + ++ LF F+ A
Sbjct: 7 YFLAIVFLHALGLALLFMANNASFYAA 33
>ref|NP_222749.1| putative [Helicobacter pylori J99]
Length = 137
Score = 20.0 bits (40), Expect = 8.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 63 KEILFTILGVVFGIFLF 79
KE+ FT+L V +F++
Sbjct: 28 KEVRFTLLHVSMEVFIY 44
>ref|NP_222742.1| putative [Helicobacter pylori J99]
Length = 523
Score = 20.0 bits (40), Expect = 8.9
Identities = 9/17 (52%), Positives = 10/17 (57%)
Query: 68 TILGVVFGIFLFFKAPS 84
TI V G+F FK PS
Sbjct: 492 TIFHSVLGVFEDFKTPS 508
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.337 0.150 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,311
Number of Sequences: 1491
Number of extensions: 3837
Number of successful extensions: 34
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 29
length of query: 93
length of database: 494,079
effective HSP length: 69
effective length of query: 24
effective length of database: 391,200
effective search space: 9388800
effective search space used: 9388800
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 40 (20.0 bits)