BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646122|ref|NP_208304.1| selenocysteine synthase
SelA, putative [Helicobacter pylori 26695]
(386 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224124.1| L-SERYL-TRNA(SER) SELENIUM TRANSFERASE [He... 664 0.0
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 30 0.14
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 30 0.14
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 30 0.14
ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99] 29 0.23
ref|NP_223280.1| putative lipopolysaccharide biosynthesis p... 28 0.52
ref|NP_224198.1| putative REGULATORY PROTEIN [Helicobacter ... 27 0.89
ref|NP_222960.1| ADENYLOSUCCINATE SYNTHETASE [Helicobacter ... 27 1.2
ref|NP_223281.1| putative lipopolysaccharide biosynthesis p... 26 1.5
ref|NP_223109.1| putative [Helicobacter pylori J99] 26 1.5
ref|NP_223560.1| putative [Helicobacter pylori J99] 25 2.6
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 25 3.4
ref|NP_223436.1| putative [Helicobacter pylori J99] 25 3.4
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 25 3.4
ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 25 4.4
ref|NP_223364.1| putative [Helicobacter pylori J99] 25 4.4
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 25 4.4
ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kina... 25 4.4
ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 24 5.8
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 24 5.8
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 24 5.8
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 24 7.5
ref|NP_224033.1| FLAGELLUM-SPECIFIC ATP SYNTHASE [Helicobac... 23 9.9
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 23 9.9
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 23 9.9
ref|NP_222916.1| putative Outer membrane protein [Helicobac... 23 9.9
>ref|NP_224124.1| L-SERYL-TRNA(SER) SELENIUM TRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 664 bits (1712), Expect = 0.0
Identities = 339/384 (88%), Positives = 354/384 (91%)
Query: 3 KETLEITPDLLKNPYQKIINASASVFDEKHGRSFFSTQFYEKIEPYLKEVLTHPIDLECD 62
KET TPDLLK+PYQKIINAS SVFDE HGRSFFS QFYEKIEPYLKEVLTHPI LECD
Sbjct: 7 KETPPTTPDLLKSPYQKIINASVSVFDETHGRSFFSPQFYEKIEPYLKEVLTHPIGLECD 66
Query: 63 LNTAKKKNRLTPLKQLFKACFNTEEILIVNNNTSAIFLIANALAQEKEIIVSYGELVGGD 122
LNTAKK NRLTPLKQLFK CF+TEE+LIVNNNTS +FLIANALAQ+KEIIVSYGELVGGD
Sbjct: 67 LNTAKKTNRLTPLKQLFKVCFDTEEVLIVNNNTSTVFLIANALAQQKEIIVSYGELVGGD 126
Query: 123 FNLKDILLNSGARLHLVGNINRAYLRDYRLALNENSKILFKTHNPHFKKDTPFKDLQTLA 182
FNLKDILL+SGARLHLVGN NRAYLRDYRLALNENSK+LFKTHNP FKKDT FKDLQ LA
Sbjct: 127 FNLKDILLSSGARLHLVGNTNRAYLRDYRLALNENSKMLFKTHNPTFKKDTSFKDLQALA 186
Query: 183 KEHDLIDYYNLGDVDLSNRVALEEILALKPSLLSFSADKFFNSAQAGIIMGQKERVEALK 242
KEH LIDYYNLGDVDL NR ALEEILALKPSL+SFSADK FNSAQAGIIMGQKE VE LK
Sbjct: 187 KEHGLIDYYNLGDVDLLNRTALEEILALKPSLVSFSADKSFNSAQAGIIMGQKEWVETLK 246
Query: 243 NHPLYRVLRVGKITLTLLFCSLKAWINHQEDITIHALLNQTKDALLQKALKLYALLKPLE 302
NHPLYR LRVGKITLTLLF SL AW+NHQE+ITIHALL+QTKDALLQKALKLYALLKPLE
Sbjct: 247 NHPLYRALRVGKITLTLLFHSLNAWVNHQEEITIHALLHQTKDALLQKALKLYALLKPLE 306
Query: 303 LNVSIASSFSKIGNLFGRELESFCVKIQPKNTRALNSEKLYLKLFQKGVIARISCEFVCF 362
LNVSIASSFSKIGNL +ELESFCVK+QPKNTRALN EKLYLKLFQKGVI RISC FVCF
Sbjct: 307 LNVSIASSFSKIGNLPDKELESFCVKVQPKNTRALNCEKLYLKLFQKGVITRISCAFVCF 366
Query: 363 EVFSLNEKDFEKIALVLEEILNKA 386
EVFSLN +D EKIALVL+EILNKA
Sbjct: 367 EVFSLNGEDLEKIALVLKEILNKA 390
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 29.6 bits (65), Expect = 0.14
Identities = 33/139 (23%), Positives = 56/139 (39%), Gaps = 13/139 (9%)
Query: 74 PLKQLFKACFNTEEILIVNNNT--SAIFLIANALAQEKEIIVSYGELVGGDFNLKDILLN 131
P++Q + C ++N+NT S + L ++ YG V D L +LN
Sbjct: 377 PIQQDLEEC-TAGSAGVINDNTYGSGCAFVKETLNSLEQHTAYYGNQVNQDRALSQTILN 435
Query: 132 SGARLHLVGNINRAYLRDYRLALNENS--KILFKTHNPH-------FKKDT-PFKDLQTL 181
L +GN ++A N S + T NP+ + DT + LQT+
Sbjct: 436 FKEALSTLGNDSKAINSGISNLPNAKSLQNMTHATQNPNSPEGLLTYSLDTSKYNQLQTV 495
Query: 182 AKEHDLIDYYNLGDVDLSN 200
A+E + +G ++ N
Sbjct: 496 AQELGKNPFRRIGVINYQN 514
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 29.6 bits (65), Expect = 0.14
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 17/82 (20%)
Query: 50 KEVLTHPIDLECDLNTAKKKNRLTPL-----------KQLFKACFNTEEIL---IVNNNT 95
K + TH LE D+NT KK++ P+ L K+ F+ EEIL + N N
Sbjct: 398 KRLDTH---LEFDVNTLKKQDSSNPIYYIHYANSRIHTMLEKSPFSKEEILQTPLKNLNA 454
Query: 96 SAIFLIANALAQEKEIIVSYGE 117
+L+ +AL+ K + S+ E
Sbjct: 455 EEKYLLFSALSLPKAVESSFEE 476
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 29.6 bits (65), Expect = 0.14
Identities = 33/139 (23%), Positives = 56/139 (39%), Gaps = 13/139 (9%)
Query: 74 PLKQLFKACFNTEEILIVNNNT--SAIFLIANALAQEKEIIVSYGELVGGDFNLKDILLN 131
P++Q + C ++N+NT S + L ++ YG V D L +LN
Sbjct: 377 PIQQDLEEC-TAGSAGVINDNTYGSGCAFVKETLNSLEQHTAYYGNQVNQDRALSQTILN 435
Query: 132 SGARLHLVGNINRAYLRDYRLALNENS--KILFKTHNPH-------FKKDT-PFKDLQTL 181
L +GN ++A N S + T NP+ + DT + LQT+
Sbjct: 436 FKEALSTLGNDSKAINSGISNLPNAKSLQNMTHATQNPNSPEGLLTYSLDTSKYNQLQTV 495
Query: 182 AKEHDLIDYYNLGDVDLSN 200
A+E + +G ++ N
Sbjct: 496 AQELGKNPFRRIGVINYQN 514
>ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99]
Length = 316
Score = 28.9 bits (63), Expect = 0.23
Identities = 19/39 (48%), Positives = 24/39 (60%), Gaps = 5/39 (12%)
Query: 44 KIEPYLKEVLTHPIDLECDLNTAKK--KNRLTPLKQLFK 80
+IE + KE+ TH IDLE NTA+K K L KQ F+
Sbjct: 275 EIEAFKKELKTHNIDLE---NTAQKLLKEGLIAFKQSFE 310
>ref|NP_223280.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 332
Score = 27.7 bits (60), Expect = 0.52
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 6/53 (11%)
Query: 332 KNTRALNSEKLYLKLFQKGVIARISCEFVCFEVFSLNEKDFEKIALVLEEILN 384
++ R L++EKL L+ +K + C F F+ S +DFEK+ L+E+ N
Sbjct: 11 ESQRRLDTEKLVLESNEK---FKGRCVFQIFDAISPKHQDFEKL---LQELYN 57
>ref|NP_224198.1| putative REGULATORY PROTEIN [Helicobacter pylori J99]
Length = 374
Score = 26.9 bits (58), Expect = 0.89
Identities = 22/58 (37%), Positives = 32/58 (54%), Gaps = 4/58 (6%)
Query: 124 NLKD--ILLNSGARLHLVGNINRAYLRDYRLALNENSKI-LFKTHNPHFKKD-TPFKD 177
NLKD LLN GAR+ LVG + + ++A N N + K++N F+ + P KD
Sbjct: 227 NLKDKEYLLNRGARVSLVGVPFKRHTSLVQVAKNLNLSLETLKSYNHQFRYNILPSKD 284
>ref|NP_222960.1| ADENYLOSUCCINATE SYNTHETASE [Helicobacter pylori J99]
Length = 411
Score = 26.6 bits (57), Expect = 1.2
Identities = 15/37 (40%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
Query: 157 NSKILFKTHNPHFKKDTPFKDLQTLAK--EHDLIDYY 191
+ KIL + N HFK PFK L + E DL+ Y+
Sbjct: 145 DDKILEEKLNAHFKAIEPFKKAYDLGENYEKDLMGYF 181
>ref|NP_223281.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 444
Score = 26.2 bits (56), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 332 KNTRALNSEKLYLKLFQKGVIARISCEFVCFEVFSLNEKDFEKI 375
++ R L++EKL L+ +K + C F F+ S +DFEK+
Sbjct: 24 ESQRRLDTEKLILESNEK---FKGRCVFQIFDAISPKHQDFEKL 64
>ref|NP_223109.1| putative [Helicobacter pylori J99]
Length = 294
Score = 26.2 bits (56), Expect = 1.5
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 18/74 (24%)
Query: 88 ILIVNNNTSAIFLIANALAQEKEIIVSYGELVGGDFNLKDILLNSGARLHLVGNINRAYL 147
I I + N +FLIAN +AQ KE +Y RL V N A L
Sbjct: 181 IKINSKNKDELFLIANMVAQPKEGRATY------------------ERLFKVAKNNIASL 222
Query: 148 RDYRLALNENSKIL 161
+ L ENS +L
Sbjct: 223 ELHYLGAIENSSLL 236
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 25.4 bits (54), Expect = 2.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 164 THNPHFKKDTPFKDLQTLAKEHDL 187
THN K KD+QTL+++HDL
Sbjct: 175 THN--VKDPKTLKDIQTLSQKHDL 196
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 25.0 bits (53), Expect = 3.4
Identities = 15/54 (27%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 257 LTLLFCSLKAWINHQ--EDITIHALLNQTKDALLQKALKLYALLKPLELNVSIA 308
L L + W+ H+ E + ALL+ + LLQ + LYA + + ++ A
Sbjct: 422 LNKLIAKEEPWVLHKNNESEKLEALLSLIANTLLQSSFLLYAFMPKSAMKLASA 475
>ref|NP_223436.1| putative [Helicobacter pylori J99]
Length = 429
Score = 25.0 bits (53), Expect = 3.4
Identities = 15/76 (19%), Positives = 32/76 (41%), Gaps = 1/76 (1%)
Query: 83 FNTEEILIVNNNTSAIFLIANALAQEKEIIVSYGELVGGDFNLKDILLNSGARLHL-VGN 141
FN +L+ I NAL E ++ Y L+ D + +S L + +
Sbjct: 326 FNPSLLLLTQPKDRKNLFIVNALQNSDETLIEYASLLESDLRHDWVNYSSAIGLEMFLNT 385
Query: 142 INRAYLRDYRLALNEN 157
++ + + ++ +L +N
Sbjct: 386 LDPHFKKSFQESLEDN 401
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 25.0 bits (53), Expect = 3.4
Identities = 18/73 (24%), Positives = 33/73 (44%), Gaps = 4/73 (5%)
Query: 263 SLKAWINHQEDITIHALLNQTKDALLQKALKLYALLKPLELNVSIAS----SFSKIGNLF 318
SL + H++ +HA KD L KA L LK LE+ + + + ++ N +
Sbjct: 135 SLHGVLEHKKKSFMHANRENFKDILSYKAHFLQETLKSLEIQLKNYAPKLLNSKEVLNFY 194
Query: 319 GRELESFCVKIQP 331
+ F + ++P
Sbjct: 195 AEYINGFELPLKP 207
>ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 791
Score = 24.6 bits (52), Expect = 4.4
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 100 LIANALAQEKEIIVSYGELVGGDFNLKDILLNSGARLHLVGNINRAYLR--DYRLALNEN 157
LI L+Q I YG VGG F K + LN G + R YL Y LA +
Sbjct: 596 LIVTNLSQAIRI---YGYEVGGTFRYKGVSLNVG--ISRTWPTTRGYLMADSYELAASTG 650
Query: 158 SKILFK 163
+ + K
Sbjct: 651 NVFIIK 656
>ref|NP_223364.1| putative [Helicobacter pylori J99]
Length = 308
Score = 24.6 bits (52), Expect = 4.4
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 5/69 (7%)
Query: 18 QKIINASASVFDEKHGRSFFSTQFYEKI-----EPYLKEVLTHPIDLECDLNTAKKKNRL 72
QK+IN+ V EK R + + Y+KI E K+ DL L++ K ++
Sbjct: 138 QKVINSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSEFLSSLSKNKKI 197
Query: 73 TPLKQLFKA 81
P +F+A
Sbjct: 198 HPATLVFQA 206
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 24.6 bits (52), Expect = 4.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 186 DLIDYYNLGDVDLSNRVALEEILALKPSLLSFSADKFFNSAQAG 229
D ID+ + DV ++N+ ++EI+ LS ++ S + G
Sbjct: 1775 DDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGG 1818
>ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kinase [Helicobacter pylori
J99]
Length = 312
Score = 24.6 bits (52), Expect = 4.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 112 IVSYGELVGGDFNLKDILLNSGARLHLVGNINRAYLRD 149
I+S G L+ G +L R V ++R Y RD
Sbjct: 53 IISIGNLIAGGSGKTPFILEIAPRYQEVAVVSRGYQRD 90
>ref|NP_223767.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 321
Score = 24.3 bits (51), Expect = 5.8
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 27/182 (14%)
Query: 71 RLTPLKQLFKACFNTEEI--LIVNNNTSAIFLIANALAQEKEIIVSYGELVGGDFNLKDI 128
R+ +KQ CF E + LI + I AL QE Y L DF L
Sbjct: 99 RILKVKQ--PKCFLLENVKGLIHHKQQETFKTIIKAL-QEAGYTTHYQILNSADFQLAQ- 154
Query: 129 LLNSGARLHLVGNINRAYLRDYRLALNENSKILFKTHNPHFKKDTPFKDLQTLAKEHDLI 188
RL++VG + R + L + FK + + D+ + L
Sbjct: 155 ---KRERLYIVG-FRKDLKRPFNFPLGLANDYCFKDFLD--ADNECYLDVSNATFQRYLR 208
Query: 189 DYYNLGDVDLSNRVALEEILALKPSLLS---------FSADKFFNSAQAGIIMGQKERVE 239
+ YN NRV LE+IL L+ ++L F+ +++ G+ QK +++
Sbjct: 209 NPYN------HNRVFLEDILTLENAVLDTRQSDLRLYFNVFPTLRTSRHGLFYTQKGKIK 262
Query: 240 AL 241
L
Sbjct: 263 RL 264
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 24.3 bits (51), Expect = 5.8
Identities = 16/70 (22%), Positives = 29/70 (40%)
Query: 1 MAKETLEITPDLLKNPYQKIINASASVFDEKHGRSFFSTQFYEKIEPYLKEVLTHPIDLE 60
+A++T+ ITP N + INA+ + + + F F K+ + P +
Sbjct: 383 IARKTIAITPITTMNDIIQAINANTDDNQDNNTENDFDDYFTASFNNETKKFVIQPKNAS 442
Query: 61 CDLNTAKKKN 70
L + K N
Sbjct: 443 QGLFVSMKDN 452
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 24.3 bits (51), Expect = 5.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 155 NENSKILFKTHNPHFKKDTPFKDL 178
NE SK+ FK P FK+ KDL
Sbjct: 3 NERSKLAFKKTFPVFKRFLQSKDL 26
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 23.9 bits (50), Expect = 7.5
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 43 EKIEPYLKEVLTHPIDLECDLN 64
+K L EVL+H +DL D N
Sbjct: 2 DKFNKDLNEVLSHALDLALDFN 23
>ref|NP_224033.1| FLAGELLUM-SPECIFIC ATP SYNTHASE [Helicobacter pylori J99]
Length = 434
Score = 23.5 bits (49), Expect = 9.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 279 LLNQTKDALLQKALKLYALLKPLELNVSIAS 309
+++++++ +K +LYALLK E+ + I S
Sbjct: 359 IISESQNLCARKFRRLYALLKENEMLIRIGS 389
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 23.5 bits (49), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 28 FDEKHGR-SFFSTQFYEKIEPYLKEVLTHPI 57
++EK R SF+ FY IE L + L P+
Sbjct: 253 YNEKQKRESFYDISFYLTIEQDLLDTLNEPV 283
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 23.5 bits (49), Expect = 9.9
Identities = 11/41 (26%), Positives = 21/41 (50%)
Query: 11 DLLKNPYQKIINASASVFDEKHGRSFFSTQFYEKIEPYLKE 51
D+ + Y KII + + D H ++ T FY + P +++
Sbjct: 481 DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQ 521
>ref|NP_222916.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 438
Score = 23.5 bits (49), Expect = 9.9
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 143 NRAYLRDYRLALNENSKILFKTHN 166
N Y+RD+ +N KI + HN
Sbjct: 187 NEQYIRDFYAPVNYKQKINYGMHN 210
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.138 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,866
Number of Sequences: 1491
Number of extensions: 21097
Number of successful extensions: 84
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 26
length of query: 386
length of database: 494,079
effective HSP length: 79
effective length of query: 307
effective length of database: 376,290
effective search space: 115521030
effective search space used: 115521030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)