BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646125|ref|NP_208307.1| hypothetical protein
[Helicobacter pylori 26695]
(179 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223828.1| putative [Helicobacter pylori J99] 34 0.003
ref|NP_223598.1| putative [Helicobacter pylori J99] 29 0.064
ref|NP_223643.1| putative [Helicobacter pylori J99] 28 0.11
ref|NP_223773.1| putative [Helicobacter pylori J99] 27 0.42
ref|NP_223202.1| cag island protein [Helicobacter pylori J99] 26 0.71
ref|NP_224004.1| putative [Helicobacter pylori J99] 25 0.93
ref|NP_223656.1| putative [Helicobacter pylori J99] 24 2.7
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 24 2.7
ref|NP_223070.1| putative [Helicobacter pylori J99] 24 2.7
ref|NP_222981.1| putative [Helicobacter pylori J99] 24 2.7
ref|NP_223971.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 23 3.5
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 23 3.5
ref|NP_223104.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 23 4.6
ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori... 23 4.6
ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylo... 23 6.0
ref|NP_223673.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_223806.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_223661.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_223404.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_223043.1| putative [Helicobacter pylori J99] 22 7.9
>ref|NP_223828.1| putative [Helicobacter pylori J99]
Length = 391
Score = 33.9 bits (76), Expect = 0.003
Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 6/63 (9%)
Query: 23 VVSLIVFIFNLKGVF-QLIFESIFQYTQNKILSFSLSF-----FFIFFFFYAIFLIFYQI 76
+ +L++F+F L GV +F ++ K ++F++ +F F ++IF QI
Sbjct: 247 ITTLMLFVFGLAGVVGSFLFGRLYAKNSRKFIAFAMVLVICPQLLLFVFKNLEWVIFLQI 306
Query: 77 FLW 79
FLW
Sbjct: 307 FLW 309
>ref|NP_223598.1| putative [Helicobacter pylori J99]
Length = 493
Score = 29.3 bits (64), Expect = 0.064
Identities = 22/69 (31%), Positives = 33/69 (46%), Gaps = 11/69 (15%)
Query: 36 VFQLIFESIFQYTQNKILSFSLSFFFIFFFFYAIFL-IFYQIFLWYG--------AKKYK 86
++ I + Y K L+F+LS ++F F IFL I Q+ L G AKKY
Sbjct: 51 IYHKITSVFYTYEPEKGLNFNLSNLYVFGFL--IFLGILSQVILKSGSVQNFVKKAKKYS 108
Query: 87 QNQRDSEIV 95
+N + E +
Sbjct: 109 KNAKTPEFI 117
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 28.5 bits (62), Expect = 0.11
Identities = 21/76 (27%), Positives = 32/76 (41%), Gaps = 18/76 (23%)
Query: 81 GAKKYKQNQRDSE------IVYNIQKFPNEIKEELYRCYSKKQNKILRTKKLDDLIDYLD 134
G K +K RD E VYNI+ FP+ KE+ ++ LD L +Y
Sbjct: 205 GQKVFKPAYRDIEPQAQFKFVYNIEMFPSINKEK------------IKPLNLDKLSNYAY 252
Query: 135 LIGFFKSRDFFEPTKD 150
F +D+ + +D
Sbjct: 253 KTRLFHQKDYLQERRD 268
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 26.6 bits (57), Expect = 0.42
Identities = 25/120 (20%), Positives = 53/120 (43%), Gaps = 14/120 (11%)
Query: 61 FIFFFFYAIFLIFYQIFLWYGAKKYKQ-----NQRDSEIV-YNIQKFPNEIKEELYRCYS 114
F+ F YA+ L Y + L K+ ++ N++D + + N++ P+E K E +
Sbjct: 12 FLAFLLYALLL--YGLLLERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEKKNEKIEKVT 69
Query: 115 KKQNKILRTKK------LDDLIDYLDLIGFFKSRDFFEPTKDDYIVKPDVLRAIKKYHKI 168
+KQ L K+ + L D + F+ + KD+ + + R +++ ++
Sbjct: 70 EKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRL 129
>ref|NP_223202.1| cag island protein [Helicobacter pylori J99]
Length = 114
Score = 25.8 bits (55), Expect = 0.71
Identities = 14/53 (26%), Positives = 24/53 (44%), Gaps = 5/53 (9%)
Query: 25 SLIVFIFNLKGVFQLIFESIFQYTQNKILSFSLSFFFIF-----FFFYAIFLI 72
SL +FN+ + ++F Y IL + + F F FF+Y +L+
Sbjct: 27 SLYYRLFNISSIVIGFLIALFSYGAGVILVYPILFLFALIIKPSFFYYTTYLL 79
>ref|NP_224004.1| putative [Helicobacter pylori J99]
Length = 248
Score = 25.4 bits (54), Expect = 0.93
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 57 LSFFFIFFFFYAIFLIFYQIFLWYGAKKYKQNQRDSEIVYNIQKFPNEIKEELYRCYS-- 114
+ F+F F + IFLIFY + + G+ Y ++ S ++ + ++ ++ +
Sbjct: 1 MRFYFKFLWLLGIFLIFYFLDI-KGSSSYISDRVKSALMSAKNSLLDNVQAYFFQAQNIK 59
Query: 115 --KKQNKILRTKKLDD 128
+K+ IL KL++
Sbjct: 60 EFQKERLILEALKLEN 75
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 23.9 bits (50), Expect = 2.7
Identities = 8/25 (32%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 96 YNIQK-FPNEIKEELYRCYSKKQNK 119
+N+ K FP E +E+++ C ++++K
Sbjct: 69 WNLSKEFPQEYREKIFECVEEEKHK 93
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 23.9 bits (50), Expect = 2.7
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 123 TKKLDDLIDYLDLIGFFK 140
TKK D IDY DL+ FK
Sbjct: 179 TKKKHDYIDYNDLLLLFK 196
>ref|NP_223070.1| putative [Helicobacter pylori J99]
Length = 272
Score = 23.9 bits (50), Expect = 2.7
Identities = 13/31 (41%), Positives = 16/31 (50%)
Query: 106 KEELYRCYSKKQNKILRTKKLDDLIDYLDLI 136
K E YR +QN LR K D + +DLI
Sbjct: 48 KPEFYRFVFTEQNNYLREKLTDKVGRAMDLI 78
>ref|NP_222981.1| putative [Helicobacter pylori J99]
Length = 431
Score = 23.9 bits (50), Expect = 2.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 78 LWYGAKKYKQNQRDSEIVYNIQKFPNEI-KEELYRCYSKKQNKILRTKK 125
L+ KK+ Q + + ++Y +K P + E +Y S NK TK+
Sbjct: 267 LYTAQKKFDQASKQASLIYQERKDPKFLGLEAIYHYESLSANKKKLTKE 315
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 23.5 bits (49), Expect = 3.5
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 60 FFIFFFFYAIFLIFYQIFLWYGAKKYKQNQRDSEIVYNIQKFPNEIKEELYRCYSKKQNK 119
FF+FF ++ I AK + N++ S+++Y + NE S Q++
Sbjct: 6 FFLFFLTFSNAQIMMTFDSQTNAKLSRSNEQLSDMLYKL----NESLRIYQNVLSNNQDQ 61
Query: 120 ILRTKKLDDLI 130
+ KK + +
Sbjct: 62 LKEIKKANSTL 72
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 23.5 bits (49), Expect = 3.5
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 116 KQNKILRTKKLDDLIDYLDLIGFFKSRDFFEPTKDD--YIVKPDVLRAIKKYHKIAFKSV 173
K K+L T K + +LD +++ + K+D ++++ A++ K+AFKSV
Sbjct: 34 KNKKLLETFKYEGEGAFLDQ----ENKILYVGVKEDDVHLLRESACLAVRTLKKLAFKSV 89
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 23.5 bits (49), Expect = 3.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 101 FPNEIKEELYRCYSKKQNKILRTKKLDDLIDYLDLIGFFKSR 142
F NEIK+E +K+ R K L++ D+L+ + F K +
Sbjct: 26 FFNEIKKEQEEVAAKEDALKARKKLLNNTHDFLEDLVFRKQK 67
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 23.5 bits (49), Expect = 3.5
Identities = 18/76 (23%), Positives = 35/76 (45%), Gaps = 19/76 (25%)
Query: 2 EKLFEKILHEMRSRTSFLLAFVVSLIVFIFNLKGVFQLIFESIFQYTQNKILSFSLSFFF 61
E+ +I+H + +R ++ ++++F L + ++ + I QN ++SF
Sbjct: 335 ERYDNQIIHVLATRG------IIGFLIWLFFLLVIVKIFWSGI---KQNSLISF------ 379
Query: 62 IFFFFYAIFLIFYQIF 77
F I L FY IF
Sbjct: 380 ----FILITLAFYLIF 391
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 23.1 bits (48), Expect = 4.6
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 4/51 (7%)
Query: 21 AFVVSLIVFIFNLKGVFQLIFESIFQYTQNKILSFSLSFFFIFFFFYAIFL 71
A +S++VF+ N+ V F Y ++ S L FI FF ++FL
Sbjct: 288 AIALSVLVFL-NMLIVAHAFFPMFSPY---QLFSIPLGLIFIVFFPLSLFL 334
>ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 23.1 bits (48), Expect = 4.6
Identities = 14/36 (38%), Positives = 21/36 (57%)
Query: 6 EKILHEMRSRTSFLLAFVVSLIVFIFNLKGVFQLIF 41
+K L + + +SF VV L VF FN++GV +F
Sbjct: 296 QKDLKTLIAYSSFSHMGVVVLGVFSFNVEGVSGAVF 331
>ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylori J99]
Length = 344
Score = 22.7 bits (47), Expect = 6.0
Identities = 13/44 (29%), Positives = 26/44 (58%), Gaps = 9/44 (20%)
Query: 136 IGFFKSRDFFEPTKDDYIVKPDV-------LRAIKKYH--KIAF 170
IG +R F E TK++ I+ D+ ++A+++Y+ ++AF
Sbjct: 12 IGSHTARVFLEKTKENIIIIDDLSTGFLEHIKALERYYPNRVAF 55
>ref|NP_223673.1| putative [Helicobacter pylori J99]
Length = 161
Score = 22.7 bits (47), Expect = 6.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 123 TKKLDDLIDYLDLIGF 138
TK+L+ L++YL+ GF
Sbjct: 124 TKELEGLLEYLERFGF 139
>ref|NP_223806.1| putative [Helicobacter pylori J99]
Length = 193
Score = 22.3 bits (46), Expect = 7.9
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 18/72 (25%)
Query: 16 TSFLLAFVVSLIVFIFNLKGVFQLIFESIFQYTQNKILSFSLSFFFIFFFFYAIFLIFYQ 75
+SFL A +V + F + ++E + YT SFF I F A+ +
Sbjct: 136 SSFLWALIVGSVSF--QASDWVKTLYERLSHYT---------SFFVISFVLIALLI---- 180
Query: 76 IFLWYGAKKYKQ 87
W+ K+Y +
Sbjct: 181 ---WFLLKRYSR 189
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 22.3 bits (46), Expect = 7.9
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 103 NEIKEELYRCYSKKQNKILRTKKLDDLIDYLDLIGFFKSRDFFEPTKD 150
N +KE + + KQN L L DY L+ D FE D
Sbjct: 164 NNVKEPNTKSNNSKQNHSLSNSDLTSNTDYNKLVA-----DMFENQMD 206
>ref|NP_223404.1| putative [Helicobacter pylori J99]
Length = 268
Score = 22.3 bits (46), Expect = 7.9
Identities = 12/38 (31%), Positives = 23/38 (59%), Gaps = 1/38 (2%)
Query: 20 LAFVVSLIVFIFNLKGVFQLIFESIFQYTQNKILSFSL 57
LAF++ L+ +F+L+ V I ++I Q + I +S+
Sbjct: 8 LAFIIPLVALLFSLECVL-FINQAIAQKEKKLIEDYSI 44
Score = 22.3 bits (46), Expect = 7.9
Identities = 17/73 (23%), Positives = 38/73 (51%), Gaps = 6/73 (8%)
Query: 3 KLFEKILHEMRSRTSFLLA--FVVSLIVFIFNLKGVFQLIFESIFQYTQN----KILSFS 56
++F K ++ S + A ++ +L+VF+ ++ +F+ + I+QY + +L S
Sbjct: 129 EVFAKTYMQVYDLLSLIKATIYIFALVVFVLSVLLMFKQVRIWIYQYHERLEIMDLLGAS 188
Query: 57 LSFFFIFFFFYAI 69
+SF F + A+
Sbjct: 189 VSFKNGFLYKIAL 201
>ref|NP_223043.1| putative [Helicobacter pylori J99]
Length = 220
Score = 22.3 bits (46), Expect = 7.9
Identities = 16/60 (26%), Positives = 30/60 (49%), Gaps = 4/60 (6%)
Query: 22 FVVSLIVFIFNLKGVFQLIFESI--FQYTQN--KILSFSLSFFFIFFFFYAIFLIFYQIF 77
FV+S+++F L+ + L+ SI ++ N ++ SL+ F+ I +QIF
Sbjct: 107 FVLSVVIFEALLESLKHLLAHSIQWLSHSANFPSTIALSLALFYGLLILLIPHFIAHQIF 166
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.332 0.147 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,500
Number of Sequences: 1491
Number of extensions: 10775
Number of successful extensions: 69
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 26
length of query: 179
length of database: 494,079
effective HSP length: 72
effective length of query: 107
effective length of database: 386,727
effective search space: 41379789
effective search space used: 41379789
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)