BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646126|ref|NP_208308.1| type IIS restriction enzyme
R and M protein (ECO57IR) [Helicobacter pylori 26695]
(1279 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 1598 0.0
ref|NP_223564.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 70 3e-13
ref|NP_223645.1| putative [Helicobacter pylori J99] 48 2e-06
ref|NP_223331.1| putative [Helicobacter pylori J99] 43 4e-05
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 38 0.002
ref|NP_224003.1| putative [Helicobacter pylori J99] 36 0.005
ref|NP_223438.1| putative [Helicobacter pylori J99] 35 0.009
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 33 0.035
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 33 0.060
ref|NP_223875.1| putative [Helicobacter pylori J99] 31 0.18
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 31 0.23
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 30 0.30
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 30 0.39
ref|NP_223622.1| putative cation efflux system protein [Hel... 30 0.39
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 30 0.51
ref|NP_223642.1| putative [Helicobacter pylori J99] 30 0.51
ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicoba... 29 0.67
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 29 0.87
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 28 1.1
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 28 1.5
ref|NP_224149.1| putative [Helicobacter pylori J99] 28 1.9
ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99] 28 1.9
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 28 1.9
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 28 1.9
ref|NP_223394.1| putative [Helicobacter pylori J99] 28 1.9
ref|NP_223245.1| putative [Helicobacter pylori J99] 28 1.9
ref|NP_222940.1| putative [Helicobacter pylori J99] 28 1.9
ref|NP_222912.1| putative [Helicobacter pylori J99] 28 1.9
ref|NP_224134.1| putative [Helicobacter pylori J99] 27 2.5
ref|NP_223889.1| putative [Helicobacter pylori J99] 27 2.5
ref|NP_223761.1| putative [Helicobacter pylori J99] 27 2.5
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 27 2.5
ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helic... 27 2.5
ref|NP_223135.1| putative [Helicobacter pylori J99] 27 2.5
ref|NP_222748.1| putative [Helicobacter pylori J99] 27 2.5
ref|NP_223787.1| putative [Helicobacter pylori J99] 27 3.3
ref|NP_223773.1| putative [Helicobacter pylori J99] 27 3.3
ref|NP_223158.1| putative [Helicobacter pylori J99] 27 3.3
ref|NP_222747.1| DETHIOBIOTIN SYNTHETASE [Helicobacter pylo... 27 3.3
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 27 4.3
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 4.3
ref|NP_224000.1| putative histidine kinase sensor protein [... 27 4.3
ref|NP_223990.1| putative [Helicobacter pylori J99] 27 4.3
ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [He... 27 4.3
ref|NP_223965.1| putative [Helicobacter pylori J99] 27 4.3
ref|NP_223560.1| putative [Helicobacter pylori J99] 27 4.3
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 27 4.3
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 27 4.3
ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANS... 27 4.3
ref|NP_222950.1| putative histidine kinase sensor protein [... 27 4.3
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 27 4.3
ref|NP_222780.1| putative [Helicobacter pylori J99] 27 4.3
ref|NP_223820.1| putative Outer membrane function [Helicoba... 26 5.7
ref|NP_223721.1| putative [Helicobacter pylori J99] 26 5.7
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 26 5.7
ref|NP_222993.1| putative [Helicobacter pylori J99] 26 5.7
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 26 5.7
ref|NP_224197.1| putative Outer membrane protein [Helicobac... 26 7.4
ref|NP_223591.1| putative [Helicobacter pylori J99] 26 7.4
ref|NP_223491.1| putative [Helicobacter pylori J99] 26 7.4
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 26 7.4
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 26 7.4
ref|NP_222742.1| putative [Helicobacter pylori J99] 26 7.4
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 25 9.7
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 25 9.7
ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE... 25 9.7
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 25 9.7
ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicoba... 25 9.7
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 25 9.7
ref|NP_223040.1| putative [Helicobacter pylori J99] 25 9.7
ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P... 25 9.7
ref|NP_222981.1| putative [Helicobacter pylori J99] 25 9.7
ref|NP_222827.1| putative [Helicobacter pylori J99] 25 9.7
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 1598 bits (4138), Expect = 0.0
Identities = 863/1292 (66%), Positives = 976/1292 (74%), Gaps = 77/1292 (5%)
Query: 10 NTNYPNQEQLKAFETAFDAFLET-NQQENENHQNDAFNDLLKGVFKYKVKPTKKIDSTIL 68
N P +E ++ FE ++ LE +Q++E Q + N LK + Y +K+DS I
Sbjct: 16 NPQEPKKETIENFEKEINSLLENVPRQDDEEFQKNEINKFLKNAYGYDCNTYEKVDSVIY 75
Query: 69 NENNEVEVIIEFKALKNPNEFIKKGDLNV-KAFHESLLSYLTE-RKEGNNNLKHLILATI 126
+ EV V+IE KAL N EF K + + KAF + +L +L E KE NN+LKH I+
Sbjct: 76 VDK-EVRVLIEVKALNNKTEFPKNRENPLSKAFCQMVLYFLEEIEKEKNNSLKHTIICNA 134
Query: 127 KELYIIDANEFEVFNKDKEIENAFKNCHDRKGNDTRTKAFYDACQKRLNE-FDRSLKYHY 185
E ++ D + +DK I+ +KN ++G D+ FY ++ L E F L+Y +
Sbjct: 135 HEFFLFDCKDLLSLKEDKRIKKFYKNYAKKEGTDSSKPKFYKDLEQFLQEDFQGELRYTH 194
Query: 186 IPLKKE--NLALIYQALSPNFLLKIPKYSDANTLNKDFYEELLYILGLEEQNDKGKILIK 243
L + L LIYQ LS LLK + DANTLNKDFYEELLYILGLEEQNDKGKILIK
Sbjct: 195 FNLSDDFKELPLIYQVLSQEVLLKQKRTLDANTLNKDFYEELLYILGLEEQNDKGKILIK 254
Query: 244 PSRTQNSLSDALKKEYKNLDDEEVMALLIAWNNRILFLRLLESLLISFKHFENP--FLTT 301
PSRT+NSLS ALK++YKNLDDEEVMALLIAWNNRILFLRLLESLLISF+HFE FLTT
Sbjct: 255 PSRTKNSLSGALKEKYKNLDDEEVMALLIAWNNRILFLRLLESLLISFEHFEKERSFLTT 314
Query: 302 ENFENFNDLNTLFFEVLAKKNSERLPEIKEDKILEKIPYLNSSLFDKTPLELKGHEIKLL 361
NF++FN LNTLFFEVLAKKNSERLPEIKE+KIL KIPYLNSSLFDKTPLELKGHEIKLL
Sbjct: 315 GNFKDFNALNTLFFEVLAKKNSERLPEIKENKILGKIPYLNSSLFDKTPLELKGHEIKLL 374
Query: 362 DNKKLEIYKNSVLKKHKDYQKEKP-LPLLKYLFKFLRLYKFTTTPKDIKDNTDTSESRLI 420
DNKKLEIYKNSVLKKH++YQK+K LPLL+Y FKFL LYKFTTTPKDIKDNTDTSESRLI
Sbjct: 375 DNKKLEIYKNSVLKKHENYQKDKASLPLLEYFFKFLHLYKFTTTPKDIKDNTDTSESRLI 434
Query: 421 NPSVLGLVFEKLNGYKEGSFYTPSFITSYMCKESITPIVLDKFNAIYQWDCENLKALRGE 480
NPSVLGLVFEKLNGYKEGSFYTPSFITSYMCKESIT IVLDKFN Y +C+ LK L+
Sbjct: 435 NPSVLGLVFEKLNGYKEGSFYTPSFITSYMCKESITTIVLDKFNQKYNIECDKLKELKNY 494
Query: 481 IDRNFSNEKAKEYLNTLLTLRICDPAVGSGHFLVSALNEMVRVAYELGLIASLYRYDLKL 540
+ ++ +K KEYL LLTLRICDPAVGSGHFLVSALNEMV +AYELGLIASL+RY L L
Sbjct: 495 LKNSYKEDKRKEYLQLLLTLRICDPAVGSGHFLVSALNEMVLIAYELGLIASLHRYSLTL 554
Query: 541 ENDEIIIHHTPTGEIFNYIKPDSENDPHHHIQKELFNLKKSIIENCLFGVDINPNSCEIT 600
ENDEIIIH+TPTGEIFNY KP ENDPHHHIQKELF LKKSIIENCLFGVDINPNSCEIT
Sbjct: 555 ENDEIIIHYTPTGEIFNYKKPLRENDPHHHIQKELFELKKSIIENCLFGVDINPNSCEIT 614
Query: 601 KLRLWIELLKYSYYIFEKGKNTNALETLPNIDINIKCANSLISRFALKDKALLKSEKNKN 660
KLRLWIELLKYSYYIFE+GKNTNALETLPNIDINIKCANSLISRF L D +K N
Sbjct: 615 KLRLWIELLKYSYYIFEEGKNTNALETLPNIDINIKCANSLISRFNLNDDL----KKIPN 670
Query: 661 LEYSIAEYKELVKIYKDPKILETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALND 720
++ I EYK+LV YKDP L +P+ ++ + K
Sbjct: 671 IKKKIQEYKDLVAQYKDPNPL----YPLNKADLINK------------------------ 702
Query: 721 RIEKIKKAFKLTLNPPPKELKFKKFLKEHLELYG------KSILEEANYNGLELEALALE 774
I+ +K F LTL P + + +K +++H++ Y KS+L+ NY
Sbjct: 703 -IQDLKNTFSLTLKDPKTKAELEKTIEKHIKKYNFFALDDKSLLDGLNYF---------- 751
Query: 775 KQMANLFFDYRPYPKLDKSDKVVGLEHFNRY--VLTSYKDLQD--ENERYANALEWRFEF 830
+ +LF + PK ++ E F Y + K L D Y NA EWRFEF
Sbjct: 752 --IPSLFGTLKLSPKEEE-------EAFASYGRIRALRKKLDDALSGGEYQNAFEWRFEF 802
Query: 831 PEVLDDEGDFSGFDCIIGNPPYIRQEHIKDLKPLLEKQYQDFYNSTADIYTYFFALAFHL 890
PEVLDDEGDF GFDCIIGNPPYIRQE IKDLKPLLEKQYQDFYNSTADIYTYFFAL+FHL
Sbjct: 803 PEVLDDEGDFLGFDCIIGNPPYIRQEQIKDLKPLLEKQYQDFYNSTADIYTYFFALSFHL 862
Query: 891 LKEKGFSAFITSNKYTRAKYGAKLREWLLKKTTIVSYMELNALKVFESAAVDTSIIHFIK 950
L+EKGFSAFITSNKY RAKYGAKLREWLLKKTT+VSYMELNALKVFESAAVDTSIIHFIK
Sbjct: 863 LREKGFSAFITSNKYARAKYGAKLREWLLKKTTLVSYMELNALKVFESAAVDTSIIHFIK 922
Query: 951 QTPSKESEFKYYEPTPNDKDDLKSTPHLLMKQNVLSTESFIFANATLLDLRDKIESVGTP 1010
Q P KES+FKYYEPTP+DKDDLKSTP+L MKQN LSTESFIFANATLLDLRDKIESVGTP
Sbjct: 923 QPPLKESDFKYYEPTPDDKDDLKSTPYLSMKQNALSTESFIFANATLLDLRDKIESVGTP 982
Query: 1011 LKDWDIQINYGIKTGANEAFIIPTEKREEILNACKTQEERERTERLIKPILRGKDIKRYS 1070
LKDWDIQINYGIKTGANEAFIIPTEKR+EILNACKTQEERERTERLIKPILRGKDIKRYS
Sbjct: 983 LKDWDIQINYGIKTGANEAFIIPTEKRDEILNACKTQEERERTERLIKPILRGKDIKRYS 1042
Query: 1071 YEWAHLWVINTHNGYTSSLKSKIPPIDIEKYPAIKAHLDAHYDTIATRCDQGDTPYHLRN 1130
YEWA W+INTHNGYTS+LKSKIPPIDIEKYPA KAHLDAHYDTIATRCDQGDTPYHLRN
Sbjct: 1043 YEWAGEWLINTHNGYTSNLKSKIPPIDIEKYPATKAHLDAHYDTIATRCDQGDTPYHLRN 1102
Query: 1131 CAYLEDFEKEKIVWASVGFVEYCMIPGL-LILDTNYFFEVSKFGNTKNYLLGLLNSKLLT 1189
CAYLEDFEKEKIV+ Y + + L+ F VS N K L LLNSKL+T
Sbjct: 1103 CAYLEDFEKEKIVYPETSQGAYFIYENSGIFLEKTVFMIVSDAYNLK-LLTALLNSKLIT 1161
Query: 1190 FWLK--AKNTPLGDMGAYRNYKYNIMELPMVKITAKNKKIADKIIALVDKILQAKEKDPK 1247
F+ K LG G Y+ K+ + ++P+ +IT KN+++ADKI ++IL K KDPK
Sbjct: 1162 FYFKNFCGGCILGKSG-YQYNKHALEKIPIPQITEKNQELADKITDCAEQILALKAKDPK 1220
Query: 1248 ANTQKLEKEIDALVYQLYHLTDEEIKIIEEGQ 1279
ANTQKLEKEIDALVYQLYHLTDEEIK IE+GQ
Sbjct: 1221 ANTQKLEKEIDALVYQLYHLTDEEIKTIEDGQ 1252
>ref|NP_223564.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 381
Score = 70.5 bits (171), Expect = 3e-13
Identities = 38/109 (34%), Positives = 58/109 (52%), Gaps = 4/109 (3%)
Query: 843 FDCIIGNPPYIRQEHIKDLKPLL-EKQYQDFYNSTADIYTYFFALAFHLLKEKGFSAFIT 901
F+ IIGNPPY++ KD+ P EK + ++ +++Y +F A LK KG FIT
Sbjct: 81 FNTIIGNPPYVKH---KDIAPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPKGELIFIT 137
Query: 902 SNKYTRAKYGAKLREWLLKKTTIVSYMELNALKVFESAAVDTSIIHFIK 950
+ ++ KL EW+ K+ TI + EL K+F +A + I F K
Sbjct: 138 PRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVIFRFCK 186
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 47.8 bits (112), Expect = 2e-06
Identities = 39/142 (27%), Positives = 60/142 (41%), Gaps = 24/142 (16%)
Query: 840 FSGFDCIIGNPPY----IRQEHIKDLKPLLEKQYQDFYNSTADIYTYFFALAFHLLKEKG 895
+ +D +GNPPY I + K+L S I+ YF A LK+ G
Sbjct: 608 YQEYDAFVGNPPYGNHKIYSSNDKEL-------------SNESIHNYFLGKAIKELKDDG 654
Query: 896 FSAFITSNKYTRAKYGAKLREWLLKKTTIVSYMEL-NALKVFESAAVDTSIIHFIKQTPS 954
AF+ S+ + AK K+RE + K T + + L N++ A V + I+ F K
Sbjct: 655 IGAFVVSSWFMDAK-NPKMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGVEK 713
Query: 955 KESE-----FKYYEPTPNDKDD 971
++ YY+ N DD
Sbjct: 714 ATNQSFTKAMPYYDKILNSLDD 735
Score = 29.3 bits (64), Expect = 0.67
Identities = 62/237 (26%), Positives = 96/237 (40%), Gaps = 53/237 (22%)
Query: 533 LYRYDLKLENDEIIIHHTPTGEIFNYIKPDSENDPHHHIQKELFNLKKSIIENCLFGVDI 592
+Y+YDL+ DE + ++ +K E P K+++ K+ ++ + +D
Sbjct: 844 IYKYDLQALEDESL-------DLSQALKQAIEKLP-----KDVYQYHKTTLKTDVLIIDS 891
Query: 593 -NPNSCEITKLRLWIE---LLKYSYYIFEKGKNTNALETLPNIDINIKCANS-LISRFAL 647
N E+ KL +E L+K+ F+ +N L IN K +S L + F +
Sbjct: 892 SNERYQEVQKLIKNLERRELVKWDNLYFQLEQNNEMGIFLKPTKINSKVQDSRLKAYFKI 951
Query: 648 KDKA--LLKSEKNK-----NLEYSIAE----YKELVKIYKDPKILETLTHPIKDSNAVRK 696
KD L +E N LE A+ Y E VK + + N RK
Sbjct: 952 KDALNDLTSAELNPLSSDLELENKRAKLNLVYDEFVKKFG-----------YLNENKNRK 1000
Query: 697 YAKERLYQELKQNPNKDFKKALNDRIEKI----------KKA---FKLTLNPPPKEL 740
++ LY KDF+K + R K+ KKA F+ TLN P KEL
Sbjct: 1001 DIRQDLYGAKVLGLEKDFEKEITPRSAKMQNIEPRQAQAKKAQIFFERTLN-PKKEL 1056
Score = 29.3 bits (64), Expect = 0.67
Identities = 47/240 (19%), Positives = 103/240 (42%), Gaps = 33/240 (13%)
Query: 26 FDAFLETNQQENENHQNDAFNDLLKGVFKYKVKPTKKIDSTILNENNEVEVIIEFKALKN 85
FD+F+ ++Q + N + F + + ++ +KID+ + + ++K +K+
Sbjct: 746 FDSFIPSDQLKIVNAVANHFGFKQEKLQRWY----EKIDTANFGYSTQ-----DYKIIKD 796
Query: 86 PNEFIKKGDLNVKAFHESLLSYLTERKEGNNNLKHLILATIKELYIIDANEFEVFNKDKE 145
+ + K +N+ ++L Y E N L HL L K Y + N +++
Sbjct: 797 FIDKVGKNSINLN--EQTLNEYFIHHPE--NILGHLSLE--KTRYRFETNGEQIYK---- 846
Query: 146 IENAFKNCHDRKGNDTRTKAFYDACQKRLNEFDRSL-KYHYIPLKKENLALIYQALSPNF 204
+D + + + A ++ + + + + +YH LK + L +
Sbjct: 847 --------YDLQALEDESLDLSQALKQAIEKLPKDVYQYHKTTLKTDVLIIDSSNERYQE 898
Query: 205 LLKIPKYSDANTLNKDFYEELLYILGLEEQNDKGKILIKPSRTQNSLSDALKKEYKNLDD 264
+ K+ K + L K ++ L + L EQN++ I +KP++ + + D+ K Y + D
Sbjct: 899 VQKLIKNLERRELVK--WDNLYFQL---EQNNEMGIFLKPTKINSKVQDSRLKAYFKIKD 953
Score = 28.5 bits (62), Expect = 1.1
Identities = 30/139 (21%), Positives = 66/139 (46%), Gaps = 22/139 (15%)
Query: 647 LKDKALLKSEKNKNLEYSIAEYKELVKIYKDPKILETLTHPIKDSNAVRK------YAKE 700
+K +A +KSE++K ++ Y + + L+ L +KD +++ + +
Sbjct: 2034 VKLRAEIKSEESKYKAFNKEHYFNEESLKNNASKLDYLKQELKDLETLQRSVIIPTHTEI 2093
Query: 701 RLYQELKQNPNKDFKKALNDRIEKIKKAFKLTLNPPPKELKFKKFLKEHLELYGKSILEE 760
+LY +LK +KD++ +E +K+ ++ +EL KK +++ + + E
Sbjct: 2094 KLY-DLKNEESKDYELIKVKEVEPLKENASMS-----EELTHKKLKEQNKQ------IAE 2141
Query: 761 ANYNGLELEALALEKQMAN 779
N L+ A++KQ A+
Sbjct: 2142 QNKEKLD----AIKKQFAS 2156
Score = 28.5 bits (62), Expect = 1.1
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 20/82 (24%)
Query: 653 LKSEKNKNLEYSIAEYKELVKIYKDPKILETLTHPIKDSNAVRKYAKERLYQELKQNPNK 712
LK+E++K +Y + + KE+ + ++ + E LTH K KE+ Q +QN K
Sbjct: 2098 LKNEESK--DYELIKVKEVEPLKENASMSEELTH---------KKLKEQNKQIAEQNKEK 2146
Query: 713 DFKKALNDRIEKIKKAFKLTLN 734
++ IKK F LN
Sbjct: 2147 ---------LDAIKKQFASNLN 2159
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 43.1 bits (100), Expect = 4e-05
Identities = 55/240 (22%), Positives = 95/240 (38%), Gaps = 38/240 (15%)
Query: 799 LEHFNRYVLTSYKDLQDENERYANALEWRFEFPEVLDDEG-----DFSGFDCIIGNPPYI 853
L++F LT D +E + + F ++ +++ + IIGNPPY
Sbjct: 523 LKNFKNIALTDSLDYLEEKNDKGVIPGFEYLFEDLKENKEIKTTMEKQNIRVIIGNPPYS 582
Query: 854 -----RQEHIKDLK-PLLEKQYQDFY---------NSTADIYTYFFALAFHLLKEKGFSA 898
++ ++L P LEK+ + Y NST D + +A LLK+KG
Sbjct: 583 SGAKSENDNNQNLSHPKLEKRVYETYGKNSTAQNKNSTRDTLIHSIRMASDLLKDKGVLG 642
Query: 899 FITSNKYTRAKYGAKLREWLLKKTTIVSYMELNALK-------------VFESAA-VDTS 944
F+ + + +K R+ + + + + + L +F+S + V +
Sbjct: 643 FVVNGSFIDSKSADGFRKCVAQDFSHLYALNLRGNARTSGEERKKQGDGIFDSGSRVTVA 702
Query: 945 IIHFIKQTPSKESEFKYYEPTPNDKDDLKSTPHLLMKQNVLSTESFIFANATLLDLRDKI 1004
II F+K + YYE +D LK L + N + +S F T D D I
Sbjct: 703 IIFFVKDKDAPNHTIFYYEV----EDYLKREAKLNLLANFENLDSVPFKEITPNDKGDWI 758
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 37.7 bits (86), Expect = 0.002
Identities = 34/128 (26%), Positives = 54/128 (41%), Gaps = 21/128 (16%)
Query: 844 DCIIGNPPY---IRQEHIKDLKPLLEKQYQDFY----------NSTADIYTYFFALAFHL 890
D I+ NPP+ EH + + + DF+ S IYT FF ++
Sbjct: 307 DFIVSNPPFKLDFSNEHAE-----ISQNKNDFFLGVPNIPKNDKSKMPIYTLFFQHCLNM 361
Query: 891 LKEKGFSAFITSNKYTRAKYGA--KLREWLLKKTTIVSYMELNALKVFESAAVDTSIIHF 948
L KG A I + AK G K+ L+ + + + + + +VF + + SII F
Sbjct: 362 LSPKGKGAIIVPTGFISAKSGVENKIVRHLVDERLVYGVICMPS-QVFANTGTNVSIIFF 420
Query: 949 IKQTPSKE 956
K +KE
Sbjct: 421 QKTPSAKE 428
Score = 25.8 bits (55), Expect = 7.4
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 23/90 (25%)
Query: 98 KAFHESLLSYLTERKEGNNNLKHLILATIKELYIIDANEFEVFNKDKEIENAFKNCHDRK 157
K ++ LL+YL E+ +N+L HL L I I +N E+FN K
Sbjct: 90 KLAYDELLNYLFEKHFYDNDL-HLKLDAI--FNRISSNNAELFN--------------TK 132
Query: 158 GNDTRTKAFYDACQKRLNE------FDRSL 181
D T A +++ + +NE F RSL
Sbjct: 133 STDETTIALFESVSQYINEGSKRANFTRSL 162
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 36.2 bits (82), Expect = 0.005
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 28/196 (14%)
Query: 605 WIELLKYSYYIFEKGKNTNALETLPNIDINIKCANSLISRFALKDKALLKSEKNKNLEYS 664
W++L + K N NA + L ++ N AL LL + + Y
Sbjct: 296 WVKLGYGKESVLLKKNNLNAFKELKDL-------NDREKEIALLKALLLLGMQKR---YK 345
Query: 665 IAEYKELVKIYKDPKILETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALNDRIEK 724
+ Y + DP +L TH + N+ + + L + ++ + DF KA +D +E+
Sbjct: 346 VEGY------FHDPLML-VFTHSVNMENSDAEIFFKTLARVIENDDESDFSKAKDDLLEE 398
Query: 725 IKKAFKLTLNPPPKELKFK-KFLKEHLELYGKSILEEANY---NGLELEALALEKQMANL 780
+K L + KE +K + KE L+ L+EA + NG +E + K +
Sbjct: 399 LKNPEFLFSDGKDKEKDYKIEVFKESLKGMDFKGLKEAVFYASNG-HIEVIINPKNNQEI 457
Query: 781 FFDYRPYPKLDKSDKV 796
F KL+ SDKV
Sbjct: 458 AF------KLNTSDKV 467
Score = 26.9 bits (58), Expect = 3.3
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 669 KELVKIYKDPKILETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALNDRIEK 724
K ++ + +++ I+ N + Y+K+ ++ LK NKDF +A D + K
Sbjct: 153 KNIMFFSANEHLIKQFEKEIEKYNRNKDYSKQIDFKNLKSVKNKDFYRAPKDSLMK 208
Score = 26.2 bits (56), Expect = 5.7
Identities = 25/105 (23%), Positives = 49/105 (45%), Gaps = 10/105 (9%)
Query: 983 NVLSTESFIFA-NATLLDLRDKIESVGTPLKDWDIQINYGIKTGANEAFIIPTEKREEIL 1041
++LS + F+F +AT + D I +V +++ + +K G + ++ +
Sbjct: 263 SLLSLKGFLFNFSATFTEESDLITAV------YNLSVGEWVKLGYGKESVLLKKNNLNAF 316
Query: 1042 NACKTQEERERTERLIKPILRGKDIKRYSYE-WAH--LWVINTHN 1083
K +RE+ L+K +L KRY E + H L ++ TH+
Sbjct: 317 KELKDLNDREKEIALLKALLLLGMQKRYKVEGYFHDPLMLVFTHS 361
>ref|NP_223438.1| putative [Helicobacter pylori J99]
Length = 175
Score = 35.4 bits (80), Expect = 0.009
Identities = 23/71 (32%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Query: 679 KILETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALNDRIEKIKKAFKLTLNPPPK 738
++ E + IK S+ + + + L + + + N D K LND EKIK +L L P PK
Sbjct: 28 EVTEAQANSIKLSDQLVSLSDKLLEKAVDRGRNTDHLKDLNDLHEKIKH-LRLILEPKPK 86
Query: 739 ELKFKKFLKEH 749
+ + LK+H
Sbjct: 87 DKENNPNLKDH 97
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 33.5 bits (75), Expect = 0.035
Identities = 74/316 (23%), Positives = 118/316 (36%), Gaps = 61/316 (19%)
Query: 459 VLDKFNAIYQWDCENLKALRGEIDRNFSNEKAKEYLNTL--------LTLRICDPAVGSG 510
V + F A+ + E LKAL ID EK E + +L L R+ D S
Sbjct: 278 VQESFKALDKAKKEWLKALEAPID-----EKEDELVRSLTLAYKRQTLKDRLYDLEPTS- 331
Query: 511 HFLVSALNEMVRVAYEL-----GLIASLYR--YDLKLENDEIIIHHTPT-GEIFNYIKPD 562
+NE+V+ G L R Y L L ND +I +H I N K D
Sbjct: 332 ----KLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIANHKKILANITNMTKED 387
Query: 563 S-ENDPHHHIQKELFNLKKSII--ENCLFGVDINPNSCEITKLRLWIELLKYSYYIFEKG 619
P + +LKK + E G D+ PN KL+ +E +K I ++
Sbjct: 388 IIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLAPN-----KLKEILEQIKRGKLISDRA 442
Query: 620 KNTNALETLPNIDINIKCANSLISRFALKD---------------KALLKSEKNKNLEYS 664
KN A N++ S+ RF + KA+ K E K ++S
Sbjct: 443 KNKMAKS-------NLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFS 495
Query: 665 IAE---YKELVK--IYKDPKILETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALN 719
K+ + I + + H I N + K ++ + + K+ + + +
Sbjct: 496 TYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVG 555
Query: 720 DRIEKIKKAFKLTLNP 735
++K+K K+T P
Sbjct: 556 LSLDKVKNVIKVTKEP 571
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 32.7 bits (73), Expect = 0.060
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 843 FDCIIGNPPYIRQEHIKDLKPLLEKQYQDFYNSTADIYTYFFALAFHLLKEKGFSAFITS 902
FDCI NPP+ +++ ++ K ++Q+ + + D + FF + + LKE + +
Sbjct: 203 FDCIFTNPPW-GKKYNQNQKENFKQQFN--LHQSLDSASLFFMASLNCLKENAYLGLLLP 259
Query: 903 NKYTRAKYGAKLREWLLK 920
+K+RE LK
Sbjct: 260 ESCLNIDAFSKMREMALK 277
Score = 31.6 bits (70), Expect = 0.13
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 18/87 (20%)
Query: 503 CDPAVGSGHFLVSALNEMVRVAYELGL-IASLYRYDLKLENDEIIIHHTPTGEIFNYIKP 561
CDPAVGSG+F++ AL +LG + ++Y YD D + T IK
Sbjct: 138 CDPAVGSGNFVMHAL--------KLGFKVENIYGYD----TDAFAVALTK-----KRIKE 180
Query: 562 DSENDPHHHIQKELFNLKKSIIENCLF 588
D + +QK+ +LK + +C+F
Sbjct: 181 RYRLDCPNIMQKDFLSLKHAPQFDCIF 207
>ref|NP_223875.1| putative [Helicobacter pylori J99]
Length = 183
Score = 31.2 bits (69), Expect = 0.18
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 251 LSDALKKEYKNLDDEEVMALLIAWNNRILFLRLLESLLISFKHFENPFLTTENFENFNDL 310
L ++KKE N DE+ LL + I F+R+ E L F + E F
Sbjct: 42 LEKSVKKE--NAIDEQARELLEENTDEIEFMRMDERQL--FWMIKRQIAQKEGFH----- 92
Query: 311 NTLFFEVLAKKNSERLPEIKEDKILEKIPYLNSSLFDKTPLELKGHEIKLLD--NKKLEI 368
LF+E ER ++ +IL KI + +F + ++ K +D +K E
Sbjct: 93 --LFWE-------ERCSDLSH-QILNKILDEDLIMFSVSENLIRNLIYKSIDTYSKAYES 142
Query: 369 YKNSVLKKHKDYQKEKPLPLLKYLFKFLRLYK 400
+N V +K K Y+++ P+ +Y F RLY+
Sbjct: 143 IENEVHEKIKHYKRKLPVGSDEYELVFERLYE 174
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 30.8 bits (68), Expect = 0.23
Identities = 20/67 (29%), Positives = 39/67 (57%), Gaps = 5/67 (7%)
Query: 424 VLGLVFEKLNGYKEGSFYTPSFITSYMCKESITPIVLDK--FNAIYQW-DCENLKALRGE 480
+ ++ +KL+ + G+F TPS I +Y+ K+S+ ++ DK N I + D L ++ G
Sbjct: 1489 IQNIISQKLSIF--GNFVTPSIIENYLAKQSLKSMLDDKGLLNFIGGYIDASELSSILGV 1546
Query: 481 IDRNFSN 487
I ++ +N
Sbjct: 1547 ILKDITN 1553
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 30.4 bits (67), Expect = 0.30
Identities = 52/238 (21%), Positives = 100/238 (41%), Gaps = 45/238 (18%)
Query: 188 LKKENLALIY--QALSPNFLLKIPKYS------DANTLNKDFY---EELLYILGLEEQND 236
+K E + L+ S + ++ KYS +A T + Y +E L L++ +
Sbjct: 48 IKPEEILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKE 107
Query: 237 KGKILIKPSRTQNSLSDALKKEYKN-------------LDDEEVMALLIAWN-NRILFLR 282
K+L T+N+L+D KK Y + L E+ A L + N +
Sbjct: 108 LRKLLESIVDTKNALTDEDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHAPYAA 167
Query: 283 LLESLLISFKHFENPFLTTENFENFNDLNTLFFEVLAKKNSERLPEIKEDKILEKIPYLN 342
E++L F++ + ++ ++NDL LF + + +++S E+ D+ + P
Sbjct: 168 FYENILEEFENTKK----KHDYIDYNDLLLLFKKAMLERSSP-YKEVLCDEFQDTNPLQE 222
Query: 343 SSL-------------FDKTPLELKGHEIKLLDNKKLEIYKNS-VLKKHKDYQKEKPL 386
S L +D++ G +I ++ N + YKN+ V K+Y+ K +
Sbjct: 223 SILDAINPPSLFCVGDYDQSIYAFNGADISIISN-FTQKYKNARVFTLTKNYRSSKEI 279
Score = 28.9 bits (63), Expect = 0.87
Identities = 35/139 (25%), Positives = 60/139 (42%), Gaps = 21/139 (15%)
Query: 41 QNDAFNDLLKGVFKYKVKPTKKIDSTILNENNEVEVIIEFKALK-NPNEFIKKGDLNVKA 99
+N+A D L+ + P+K+ S E+ EV + ++ AL NP + + A
Sbjct: 342 RNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICALLFNPKDI-------MAA 394
Query: 100 FHESLLSYLTE-----RKEGNNNLKHLILATIKELYIIDANEFEVFNKDKEI------EN 148
H +LSY+++ K+ + L L +K I E +++ K KEI E
Sbjct: 395 IH--ILSYISDIGSNTAKDIHEALMLLGNGDLKSALIQPNQEAKIYTKKKEITSMGLFEE 452
Query: 149 AFKNCHDRKGNDTRTKAFY 167
F + + N KAF+
Sbjct: 453 IFALENSSRFNSVIDKAFH 471
Score = 26.2 bits (56), Expect = 5.7
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 20/132 (15%)
Query: 856 EHIKDLKPLLEKQYQDFYNSTADIYTYFFALAFHLLKEKGFSAFITSNKYTRAKYGAKLR 915
E I D K L + + Y S +Y ++L + LK++ FSA+++S A Y A
Sbjct: 113 ESIVDTKNALTDEDKKPYTSQ-HLYA-LYSLYTNALKQEDFSAWLSSKNPEHAPYAAFYE 170
Query: 916 EWL------LKKTTIVSYMELNALKVFESAAVDTSIIHFIKQTPSKE---SEFKYYEPTP 966
L KK + Y +L L +F+ A ++ S +P KE EF+ P
Sbjct: 171 NILEEFENTKKKHDYIDYNDL--LLLFKKAMLERS-------SPYKEVLCDEFQDTNPLQ 221
Query: 967 NDKDDLKSTPHL 978
D + P L
Sbjct: 222 ESILDAINPPSL 233
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 30.0 bits (66), Expect = 0.39
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 610 KYSYYIFEKG----KNTNALETLPNIDINIKCANSLISRFALKDKALLKSEKNKNLEYSI 665
K+ + +F G + N E LP++ N AN I F + ++ K K+ E
Sbjct: 126 KHPFTLFSAGVFSFEMLNFFEDLPHLKANDNTANDFI--FYVAQNLIIIDHKEKSAEILG 183
Query: 666 AEYKELVK--IYKDPKILETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALNDRIE 723
A + E K I K+ + L+ L IK S+ + K AK+ + + + + +F+K + E
Sbjct: 184 ACFDERFKTEIAKELQDLKELVKNIK-SDFIPKKAKQSIEVSVSCD-DSEFEKKVLFLQE 241
Query: 724 KIKK 727
+IKK
Sbjct: 242 EIKK 245
>ref|NP_223622.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 359
Score = 30.0 bits (66), Expect = 0.39
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 753 YGKSILEEANYNGLELEALALEKQMANLFFDYRPYPKLDKSDKVVGLEHFNRYVLTSYK 811
Y + +LEE N + L+ + L+K++ + + Y D VV F+ V+ YK
Sbjct: 25 YPEIVLEEKNLQPMGLKVIKLDKEIFSKGLPFNAYIDFDSKSSVVQSLSFDASVVAVYK 83
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 29.6 bits (65), Expect = 0.51
Identities = 31/115 (26%), Positives = 50/115 (42%), Gaps = 16/115 (13%)
Query: 651 ALLKSEKNKNLEYSIAEYKELVKIYKDPKILETLTHPIKDSNAVRKYAKERLYQELKQNP 710
+L+ EK LE + E + L++ DPK + L KD+ ++ Y +E L P
Sbjct: 468 SLVADEKELLLEQILQEAQNLLEHRIDPKDITILCATNKDALEIKNYLQEYL---SAIRP 524
Query: 711 NKDFKKALNDRIEK--IKKAFKLTLNPPPKELKFKKFLKEHLELYGKSILEEANY 763
+ + L+ +E IK A + L P +K F Y S+L+ A Y
Sbjct: 525 STESSAKLSQLVESKIIKNALEYALAEEP----YKPF-------YKHSVLKLAGY 568
Score = 25.8 bits (55), Expect = 7.4
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 98 KAFHESLLSYLTERKEGNNNLKHLILATIKELYIIDANEFEVFNKDKEIENAFKNCHDRK 157
KA+ S +YL ++ +N KH+ +K + D E + +E +N ++ D K
Sbjct: 437 KAYQNSPTAYLEQKYPKTSNNKHVTEGYVKVSLVADEKELLLEQILQEAQNLLEHRIDPK 496
Query: 158 GNDTRTKAFYDACQKR--LNEFDRSLKYHYIPLKKENLALIYQALSPNFLLKIPKYSDAN 215
DA + + L E+ +++ E+ A + Q + + +Y+ A
Sbjct: 497 DITILCATNKDALEIKNYLQEYLSAIR-----PSTESSAKLSQLVESKIIKNALEYALAE 551
Query: 216 TLNKDFYE 223
K FY+
Sbjct: 552 EPYKPFYK 559
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 29.6 bits (65), Expect = 0.51
Identities = 17/58 (29%), Positives = 29/58 (49%)
Query: 16 QEQLKAFETAFDAFLETNQQENENHQNDAFNDLLKGVFKYKVKPTKKIDSTILNENNE 73
+EQL+ ++T D + EN + DAF L+ + K K+ P ++ +NNE
Sbjct: 71 KEQLEFYQTNRDYDPSLDNDENSSELLDAFTSSLENLEKQKINPIREQKRESGWQNNE 128
>ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicobacter pylori J99]
Length = 328
Score = 29.3 bits (64), Expect = 0.67
Identities = 40/154 (25%), Positives = 65/154 (41%), Gaps = 22/154 (14%)
Query: 210 KYSDANTLNKDF-YEELLYILGLEEQNDKGKILIKPSRT----QNSLS-DALKKEYKNLD 263
K +D LN+ F + + L LG + K K I P +N L LKK+ + +
Sbjct: 165 KANDFLNLNESFNHNQALIDLGALICSPKPKCAICPFNPYCLGKNHLERHTLKKKQEIIQ 224
Query: 264 DEEVMALLIAWNNRILFLRLLESLLISFKHFEN---------PFLTTENFENFN---DLN 311
+E + ++I NN+I ++ + L + HF N PFL T + +LN
Sbjct: 225 EERYLGVVIQ-NNQIALEKIEQKLYLGMHHFPNLKENLEFKLPFLGTIKHSHTKFKLNLN 283
Query: 312 TLFFEVLAKKNSERLPEIKEDKILEKIPYLNSSL 345
KN R +K+ LE +P + +L
Sbjct: 284 LYLATTKDLKNPIRFYSLKD---LETLPISSMTL 314
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 28.9 bits (63), Expect = 0.87
Identities = 48/205 (23%), Positives = 75/205 (36%), Gaps = 44/205 (21%)
Query: 80 FKALKNPNEFIKKGDLNVKAFHESLLSYLTERKEGNNNLKHLILATIKELYIIDANEFEV 139
F+ ++ EF+K V+ F + NNLK+L A AN +
Sbjct: 12 FENKESAEEFLKTLQTEVQEFENAY----------QNNLKNLDAAKF-------ANTLKH 54
Query: 140 F-NKDKEIENAFKNCHDRKGNDTRTKAFYDACQKRLNEFDRSLKYHYIPLK----KENLA 194
+ N ++I A +T+ FY C+ + L + I K K+ LA
Sbjct: 55 YENLSEKISRAMAYAQLLFAKNTKEAKFYSQCEMACANIQQHLLFFEIEFKNLDAKKQLA 114
Query: 195 LIYQALSPNFLLKIPKYSDANTLNKDFYEELLYILGLEEQNDKGKILIKP------SRTQ 248
I + F L +TLN D +K + + P SR
Sbjct: 115 FIKKCKDHAFYLNNLIEKKKHTLNLD--------------EEKIALALSPVGVGAFSRLF 160
Query: 249 NSLSDALKK--EYKNLDDEEVMALL 271
+ +LK E K L +EE++ALL
Sbjct: 161 DEHFSSLKIPFEEKTLSEEEILALL 185
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 28.5 bits (62), Expect = 1.1
Identities = 15/54 (27%), Positives = 30/54 (54%), Gaps = 6/54 (11%)
Query: 1224 NKKIADKIIALVDKILQAKEKDPKANTQKLEKEIDALVYQLYHLTDEEIKIIEE 1277
N +++ L+D +++ + TQKL+KEI + V+Q T++E + E+
Sbjct: 184 NNNTEQRLLDLIDIVIE------ETKTQKLQKEIKSKVHQKMEQTNKEYFLKEQ 231
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 28.1 bits (61), Expect = 1.5
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 189 KKENLAL---IYQALSPNFLLKIPKYSDAN-TLNKDFYEELLYILGLEEQNDKGKILIKP 244
K ENL L +Y +S FL K+ K N TL K+ EEL +L L+E D+ +I P
Sbjct: 769 KSENLQLKAGVY--VSKAFLKKLNKEVGQNITLTKE-EEELTGVLYLDESLDQEVFVISP 825
Query: 245 SRTQNSLSDALKKEYKNLDDEE 266
S N + + + ++D +E
Sbjct: 826 SLLTNHFNFFREGVFDSVDLKE 847
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 27.7 bits (60), Expect = 1.9
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 18/146 (12%)
Query: 625 LETLPNIDINIKCANSLISRFALKDKALLKSEKNKNLEYSIAEYKELVKIYKD-PKILET 683
+ETL + + N + +R K + K S+ +VK Y D KI +
Sbjct: 69 IETLKELLVKFYYQNWVATREEPKKQTNCNIIKALKENKSVESIASIVKEYLDYHKITQD 128
Query: 684 LTHPIKDSNAVRKYAKER-----------LYQELKQNPNKDFKKALND-RIEKIKKAFKL 731
++DS ++ K + + N N + K +D +E+I L
Sbjct: 129 FKKNLQDSKLYEQHKKSSKNSWVKPVLILVEYSMSDNANPAYIKMDDDLHVERI-----L 183
Query: 732 TLNPPPKELKFKKFLKEHLELYGKSI 757
NP P K F +E ELY S+
Sbjct: 184 PQNPDPSSQWVKDFSEEERELYTHSL 209
>ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99]
Length = 459
Score = 27.7 bits (60), Expect = 1.9
Identities = 24/90 (26%), Positives = 39/90 (42%), Gaps = 17/90 (18%)
Query: 737 PKELKFKKFLKEHLELYGKSILEEANYNGLELEALALEKQMANLFFDYRPYPKLDKSDKV 796
PKE K YGK I AL+ + N + +P + +KV
Sbjct: 106 PKEYNGFKITLNQNPFYGKDIQ-------------ALKNTLLNAKHEIKPLK--ETPEKV 150
Query: 797 VGLEHFNRYVLTSYKDLQDENERYANALEW 826
LE ++RY++ +K L +N +Y AL++
Sbjct: 151 NALEAYHRYLIKDFKHL--KNLKYKIALDF 178
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 27.7 bits (60), Expect = 1.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 23 ETAFDAFLETNQQENENHQNDAFNDLLKGVFKYK 56
E A F+E+ +Q +N +NDA + +KGV K K
Sbjct: 135 EPAKTPFVESPKQNEKNEKNDAKENGIKGVEKNK 168
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 27.7 bits (60), Expect = 1.9
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 10 NTNYPNQEQLKAFETAFDAFLETNQQENENHQNDAFNDLLKGVFKYKVKPTKKIDSTILN 69
N N NQ+ LK ++ F+ +E+ + + D + FK VK K +
Sbjct: 358 NANITNQDALKLYQLIFERTIESQGKNAIYDKQDLLFKIKNEYFKCSVKGLKSAGFLAMF 417
Query: 70 ENNEVE 75
E+E
Sbjct: 418 SKKELE 423
>ref|NP_223394.1| putative [Helicobacter pylori J99]
Length = 241
Score = 27.7 bits (60), Expect = 1.9
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 128 ELYIIDANEFEVFNKDKEIENAFKNCHDRK 157
EL++++ + F N+ KEIE +N H K
Sbjct: 211 ELFVLEGDHFFFLNQAKEIEKLVENYHHAK 240
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 27.7 bits (60), Expect = 1.9
Identities = 41/180 (22%), Positives = 67/180 (36%), Gaps = 29/180 (16%)
Query: 183 YHYIPLKKENLALIYQALSPNFLLKIPKYSDANTLNKDFYEELL-----YILGLEEQNDK 237
YH + + L Q +P LL+ NTLN L ++ + K
Sbjct: 204 YHELATQYPLLLKFDQQNNPRELLR------PNTLNHQLQPSLTPFKDCAVMAFRNHSFK 257
Query: 238 GKILIKPSRTQNSLSDALKKEYKNLDDEEVM-----ALLIAWNNRILFLRLLESLLISFK 292
++++ +T + KNLDD + L + N L LR E L +S
Sbjct: 258 DSLMLETCKTPTDWQKPISTNLKNLDDSLNLLNLNGILYLIHNPSDLSLRRKE-LWLSKL 316
Query: 293 HFENPFLTTENFENFND-------LNTLFFEVLAKKNSERLPEIKEDKILEKIPYLNSSL 345
N F T + + N+ LN F +++ N + I+ + + YLNS L
Sbjct: 317 ENSNSFKTLKVLDKANEVSYPSYSLNPHFIDIVYTYNRSHIKHIRFN-----MAYLNSLL 371
>ref|NP_222940.1| putative [Helicobacter pylori J99]
Length = 176
Score = 27.7 bits (60), Expect = 1.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 881 TYFFALAFHLLKEKGFSAFITSNKYTRAKYGAKLREWLLKKT 922
T+FF LA L G S + + T GAK++EW+L+K+
Sbjct: 14 TFFFPLAL-LFAVSGLSLLFKARQDT----GAKIKEWVLEKS 50
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 27.7 bits (60), Expect = 1.9
Identities = 33/152 (21%), Positives = 63/152 (40%), Gaps = 23/152 (15%)
Query: 658 NKNLEYSIAEYKELVKIYKDPKILETLTHPI--KDSNAVRK-----YAKERLYQELKQNP 710
N L + ++ ++K YK+PKI + I K++ + + + L+ + NP
Sbjct: 390 NNGLSHQFEKFVPIMKEYKEPKITDNDLEAISTKETGLASQLSGHWFFQLSLFNKTNFNP 449
Query: 711 NKDFKKALNDRIEKIKKAFKLTLNPPPKELKFKKFLKEHLELYGKSILEEANYNGLELEA 770
NK + L N K +KF K L+ + + + + + ++ E+
Sbjct: 450 NKIW--------------IPLEFNKRSK-IKFDKDLEIYFDSHESFNISKKYLQEIDQES 494
Query: 771 LALEKQMANLFFDYRPYPKLDKSDKVVGLEHF 802
L KQ + F + K D +D ++ LE F
Sbjct: 495 LKKIKQSKDFFSIQKIESKHDNND-ILQLEFF 525
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 27.3 bits (59), Expect = 2.5
Identities = 19/60 (31%), Positives = 33/60 (54%), Gaps = 6/60 (10%)
Query: 60 TKKIDSTILNENNEVEVIIEFKALKNPN--EFI----KKGDLNVKAFHESLLSYLTERKE 113
T D++ NE+NE +E +A+++PN EF D N++A+ S+L + + KE
Sbjct: 208 TSSADASENNESNENRDNVEKQAIRDPNIKEFACGKWVYDDENLQAYRPSILKRVDKDKE 267
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 27.3 bits (59), Expect = 2.5
Identities = 14/61 (22%), Positives = 30/61 (48%)
Query: 681 LETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALNDRIEKIKKAFKLTLNPPPKEL 740
L+T T + +++ K+ + QE+KQ ++ K+ EK K + +++P +
Sbjct: 85 LDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQ 144
Query: 741 K 741
K
Sbjct: 145 K 145
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 27.3 bits (59), Expect = 2.5
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 642 ISRFALKD---KALLKSEKNKNLEYSIAEYK--ELVKIYKDPKILETLTHPIKDSNAVRK 696
I+RFA D KAL ++ K+ N++ + E+K ++ K DPK E KD + +
Sbjct: 693 IARFARFDDPSKALFEALKSDNIKKGLKEFKIADVTKDMFDPKSKE-----FKDID-IYD 746
Query: 697 YAKERLYQELKQNPNKDFKKALNDRIEKIKKAFKLTLNPPPKE 739
+ L + N N K L ++ ++K K + P E
Sbjct: 747 FTHYLLMVNREPNENNPVLKRLIQAVKDMQKEKKKGIKKPKLE 789
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 27.3 bits (59), Expect = 2.5
Identities = 17/67 (25%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Query: 686 HPIKDSNAVRKYA---KERLYQELKQNPNKDFKKALNDRIEKIKKAFKLTLNPPPKELKF 742
H I+D+ K A E L Q Q P+K+ + + ++ +++ + P P +
Sbjct: 396 HLIEDTTPQPKNAISVTELLAQIKNQTPSKECRALNEEEVKTLEEVKNIIKTPKPLQKDL 455
Query: 743 KKFLKEH 749
KK K+H
Sbjct: 456 KKNAKKH 462
>ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 290
Score = 27.3 bits (59), Expect = 2.5
Identities = 45/184 (24%), Positives = 78/184 (41%), Gaps = 17/184 (9%)
Query: 609 LKYSYYIFEKGKNTNALETLPNIDINIKCANSLIS-RFALKDKAL-LKSEKNKNLEYSIA 666
LKY Y I + +N N + ++ INIK IS LK+ L + + K + +
Sbjct: 103 LKYLYEILQNLENDN----MTDLGINIKITYKDISVNLDLKESLLVINALATKKIALRGS 158
Query: 667 EYKELVKIYKDPKILETLTH-PIKDSNA-VRKYAKERLYQELKQNPNKDFKKALNDRIEK 724
Y + K + P +LE I +S+ + K++ +L+ + DFK DR +
Sbjct: 159 AYSMIGKRIEKPLMLELCKRCGISESHIDATNFKKDK---KLEYDREVDFKLYNKDRSKV 215
Query: 725 IKKAFKLTLNPPPKELKFKKFLKEHLELYGKSILEEANYNGLE---LEALALEKQMANLF 781
+ KL P+ + +++ L E N LE + LAL K +N+
Sbjct: 216 YRVEVKLMSKGNPESA--DAVIARDTDIFIAYTLSEQNKQQLEYLNIVYLAL-KNNSNII 272
Query: 782 FDYR 785
D++
Sbjct: 273 LDFK 276
>ref|NP_223135.1| putative [Helicobacter pylori J99]
Length = 631
Score = 27.3 bits (59), Expect = 2.5
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 536 YDLKLENDEIIIHHTPTGEIFNYIKPDSENDPHHHIQKELFNLKKSIIENCLFGVDINPN 595
Y L E + + + HTPT + + P H + + FN+ K+ + N + +D N
Sbjct: 48 YQLLFETNHLNLLHTPTNAL---------SYPKHQMIETAFNMAKNPLNNPRWSLDNNHL 98
Query: 596 SCEITK 601
S K
Sbjct: 99 SLHYLK 104
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 27.3 bits (59), Expect = 2.5
Identities = 66/299 (22%), Positives = 111/299 (37%), Gaps = 68/299 (22%)
Query: 98 KAFHESLLSYLTERKEGNNNLKHLILATIKELYIIDAN------EFEVFNKDKEIENAFK 151
K F++ + Y + G +L +LAT K+ +D + + N
Sbjct: 272 KYFNQEAICYCQNAETGKVDL---VLATEKDFGKVDMTFTGITFTIPLTQSITRLHNKVY 328
Query: 152 NCHDRKGND-----------TRTKA---------FYDACQKRLNEFDRSLKYHYIP---- 187
D++G D T+ KA FY + R+ F R+ +YH P
Sbjct: 329 TFFDKQGKDNYGVFFDELSTTKLKAMSIPKIADEFYRHLENRVKSFIRARQYHGSPRTFD 388
Query: 188 ---LKKENLALIYQ------------ALSPNFLLKIPKYSDANTLNKDFYEELL-YILGL 231
++K L I + S N +KI ++A K+ + L+ +L
Sbjct: 389 ADDIEKYELQAIKRLDLQRCAKSKSFKASYNHNIKINNLANALRQGKEVSKTLITKVLAN 448
Query: 232 EEQNDKGKILIKPSRTQ-NSLSDALKKEYKN-LDDEEVMALLIAWNNRILFLRLLESLLI 289
D G I TQ ++S L K ++ E + LL A +++ + L +L
Sbjct: 449 TIDTDAGYCFISDLATQLGNISPRLSKSIVTAIEQAEGIRLLYALIDKVSYNSLHNTLNF 508
Query: 290 SFKHFENPFLTTENFENFNDLNTLFFEVLAKK-NSERLPEIKEDKILEKIPYLNSSLFD 347
F +NP + LN L EV + + +LP+IK + L S +FD
Sbjct: 509 IF-DIDNPM-------SDQSLNELVVEVPREALKNVKLPQIKNE--------LTSQIFD 551
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 26.9 bits (58), Expect = 3.3
Identities = 31/107 (28%), Positives = 50/107 (45%), Gaps = 8/107 (7%)
Query: 679 KILETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALNDRIEKIKKAFKLTLNPPPK 738
+I+ETL IK + + + + K + NK+ A+ D I+K + N K
Sbjct: 354 RIIETLRSKIKANQQKMIDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQI-TNHNETIK 412
Query: 739 EL-KFKKFLKEHLELY----GKSILEEAN--YNGLELEALALEKQMA 778
++ K KK KE + KS ++E N Y GLE LEK+++
Sbjct: 413 DIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKEIS 459
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 26.9 bits (58), Expect = 3.3
Identities = 17/46 (36%), Positives = 24/46 (51%)
Query: 702 LYQELKQNPNKDFKKALNDRIEKIKKAFKLTLNPPPKELKFKKFLK 747
LY L + NK+ +K L D +K ++A L L P E K +K K
Sbjct: 22 LYGLLLERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEKKNEKIEK 67
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 26.9 bits (58), Expect = 3.3
Identities = 79/425 (18%), Positives = 166/425 (38%), Gaps = 48/425 (11%)
Query: 2 DYKKLDL-PNTNYPNQEQLKAFETAFDAFLETNQQENENHQNDAFNDLLKGVFKYKVKPT 60
+Y ++DL P+ + T + ++ Q N ++D +L ++ K+K
Sbjct: 401 EYYRIDLKPDELLVRVPHQRLDNTEINNLAASSNQGRFNSESDHAIAVLSH-YEAKLKEL 459
Query: 61 -KKIDS-TILNENNEVEVIIEFKALKNPNEFIKKGDLNVKAFHESLLSYLTE-------- 110
KK+D+ +I + N V + F +PN GD N+ ++ T+
Sbjct: 460 DKKLDADSIYSLKNIVAKNLNFDKATHPNV----GDSNLALLMYNMPRTKTQGIELLNRW 515
Query: 111 RKEGNNNLKHLILATIKELYIIDANEFEVFNKDKEIENAFKNCH-----DRKGNDTRTKA 165
+KE +N++K +K++++ +A F D N N + DR + +
Sbjct: 516 QKEFSNDIKSY--EKVKKMFVDNAGSFHNLIHDMNFPNVSLNAYLSDIMDRSFANLKNYP 573
Query: 166 FYDACQKRLNE-FDRSLKYHYIPLKKENLALIYQALSPNFLLKIPKYSDANTLNKDFYEE 224
K L+E F ++ ++ + I + L I +++ + +K +E
Sbjct: 574 STSESLKDLSEKFYKTSSLDMFEKSDQSASDISEILGG----AIARFARFDDPSKALFES 629
Query: 225 LLYILGLEEQNDKGKILIKPSRTQNSLSDALKKEYKNLDDEEVMALLIAWN-----NRIL 279
L + KG K + + + KE+K++D + L+ N N +
Sbjct: 630 LK-----SDNIKKGLKDYKIADITKDMFNPDSKEFKDIDIYDFTHYLLMVNREPNENNPV 684
Query: 280 FLRLLESLLISFKHFENPFL-----TTENFE-----NFNDLNTLFFEVLAKKNSERLPEI 329
RL++++ K E E E +F+D N E+ A N+ ++P
Sbjct: 685 LNRLIQAVKGMQKESEKGIKEVSKQAAEETEKGIKRDFSDTNLSNNEIKALLNNAKIPTS 744
Query: 330 KEDKILEKIPYLNSSLFDKTPLELKGHEIKLLDNKKLEIYKNSVLKKHKDYQKEKPLPLL 389
D ++ LN + + K I+ NK++E+ +++ + +D + +
Sbjct: 745 GRDAVIFGKNNLNPEIVEFIHKNHKRMAIEKASNKEIELLQDANFRHPEDVRASLDHEAI 804
Query: 390 KYLFK 394
++ K
Sbjct: 805 THILK 809
Score = 26.9 bits (58), Expect = 3.3
Identities = 52/226 (23%), Positives = 89/226 (39%), Gaps = 26/226 (11%)
Query: 617 EKGKNTNALETLPNIDINIKCANSL----ISRFALKD---KALLKSEKNKNLEYSIAEYK 669
EK T++L+ D + + + I+RFA D KAL +S K+ N++ + +YK
Sbjct: 584 EKFYKTSSLDMFEKSDQSASDISEILGGAIARFARFDDPSKALFESLKSDNIKKGLKDYK 643
Query: 670 ELVKIYKDPKILETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALNDRIEKIKKAF 729
+ I KD K+ + Y + + PN++ LN I+ +K
Sbjct: 644 -IADITKD-----MFNPDSKEFKDIDIYDFTHYLLMVNREPNEN-NPVLNRLIQAVKGMQ 696
Query: 730 KLTLNPPPKELKFKKFLKEHLELYGKSI---LEEANYNGLELEALALEKQMANLFFDYRP 786
K E K+ K+ E K I + N + E++AL ++ D
Sbjct: 697 K------ESEKGIKEVSKQAAEETEKGIKRDFSDTNLSNNEIKALLNNAKIPTSGRDAVI 750
Query: 787 YPKLDKSDKVVGLEHFNRYVLTSYKDLQDENERYANALEWRFEFPE 832
+ K + + ++V H N + K E E +A F PE
Sbjct: 751 FGKNNLNPEIVEFIHKNHKRMAIEKASNKEIELLQDA---NFRHPE 793
>ref|NP_222747.1| DETHIOBIOTIN SYNTHETASE [Helicobacter pylori J99]
Length = 218
Score = 26.9 bits (58), Expect = 3.3
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 171 QKRLNEFDRSLKYHYIPLKKENLALIYQALSPNFLLKIPK--YSDANTL---NKDFYEEL 225
++ + +F LK + + +NL LI L +FLLK + Y A L N FY
Sbjct: 128 EENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSYQLDYKIAINLRGNNTAFYSVS 187
Query: 226 LYILGLEEQNDKGKILIKPSRTQNSLSDALK 256
L + L + I+I + +S ALK
Sbjct: 188 LPYIELFNKRSNNPIVIFQQSLKELMSFALK 218
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 26.6 bits (57), Expect = 4.3
Identities = 32/116 (27%), Positives = 56/116 (47%), Gaps = 21/116 (18%)
Query: 171 QKRLNEFDRSLKYHYIPLKKENLALIYQALSPNFLLKI-------PKYSDA-----NTLN 218
Q +N+F+++L + +N + + ++++ N +I PKY + N L
Sbjct: 829 QMDINDFNKALSQVF-----KNESSMAESIANNTRKRIIEKEASDPKYYEKLSSLLNDLI 883
Query: 219 KDFYEE-LLYILGLEEQNDKGKILI-KPSRT--QNSLSDALKKEYKNLDDEEVMAL 270
F E+ L Y+ L++ D K +I K R + + ALK Y NLD+ E +AL
Sbjct: 884 LQFREKKLTYLEYLQQIQDLAKKVIDKEDRNYPKKINTKALKTLYDNLDENEALAL 939
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 26.6 bits (57), Expect = 4.3
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 298 FLTTENFENF-NDLNTLFFEVLAKKNSERLPEIKEDKILEKIPYLNSSLFDKTPLELKGH 356
FL+ ++F +F ++TL L+ ++ ER+ E K +I + + LN++++DK L H
Sbjct: 177 FLSRKHFNDFIKRVDTLS---LSDEDLERIREKKNQEIEDCLMQLNNNIYDKEKNFLSEH 233
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 344
Score = 26.6 bits (57), Expect = 4.3
Identities = 27/106 (25%), Positives = 49/106 (45%), Gaps = 10/106 (9%)
Query: 279 LFLRLLESLLISFKHFENPFLTTENFENFNDLNT-LFFEVLAKKNSERLPEIKEDKI-LE 336
LFL+ + + +I HF ++LNT + VL+ K E + + KI ++
Sbjct: 126 LFLKPIRNEIIRIDHFLK--------NTTHELNTPMSALVLSLKTLEDNQQHRRIKIAIQ 177
Query: 337 KIPYLNSSLFDKTPLELKGHEIKLLDNKKLEIYKNSVLKKHKDYQK 382
++ +L SL +++ LLD K L +N++ + DY K
Sbjct: 178 RMSFLYRSLSYLVMQDIERESFALLDLKALITKENTLFSEMIDYHK 223
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 26.6 bits (57), Expect = 4.3
Identities = 52/250 (20%), Positives = 99/250 (38%), Gaps = 26/250 (10%)
Query: 96 NVKAFHESLLSYLTERKEGNNNLKHLILATIKELYIIDANEFEVFNKDKEIENAFKNC-- 153
N ++ E +L Y E E H I+++Y ++ ++ EN FK+
Sbjct: 738 NTESLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVY------YDTKKLERARENTFKHMLP 791
Query: 154 -----HDRKGNDTRTKAFYDACQKRLNEFDRSLKYHYIP--LKKENLALIYQALSPNFLL 206
+ + N TR + ++L D+S +I L + L+ N+ L
Sbjct: 792 PPPPTNPKTPNQTRKNVALNT-PRQLKNNDKSWTQCFISSQLNDQGLSSGGNGAGVNYPL 850
Query: 207 ---KIPKYSDANTLNKDFYEELLYILGLEEQNDKGKI--LIKPSRTQNSLSDALKKEYKN 261
K P Y++ T + + Y E G I L+ + D LK +Y
Sbjct: 851 YQFKHPNYTENFTPEFRSFIDKHYSHHFEPLEVLGYIYALLYSPHYRKRYEDFLKADYPK 910
Query: 262 L---DDEEVMALLIAWNNRILFLRLL--ESLLISFKHFENPFLTTENFENFNDLNTLFFE 316
+ +++++ L ++ L +L ESL SF+ ++P + ++ +D N + +
Sbjct: 911 ILFTNNKDLFRALSLLGIELIGLHVLNRESLNHSFEKLKDPTIGESYYKEAHDRNPIIKK 970
Query: 317 VLAKKNSERL 326
KK +RL
Sbjct: 971 PSHKKLEQRL 980
>ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 318
Score = 26.6 bits (57), Expect = 4.3
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 248 QNSLSDALKKEYKNLDDEEVMALLIAW---NNRILFLRLLESLLISFKHFENPFLTTENF 304
++S S + + N D+ E + +A +N ILF +L I + + + F
Sbjct: 70 EDSSSVTINAFFTNQDENETFHMEMATFILSNNILFTIYYGTLEIFDSIQKKVLASPKKF 129
Query: 305 ENFNDLNTLFFEVLAKKNSERLPEI-KEDKILEK 337
E+ D+ T FEV +K E L I K+ +L K
Sbjct: 130 EDGFDILTKIFEVYFEKGVECLEWINKQTSLLRK 163
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 26.6 bits (57), Expect = 4.3
Identities = 31/126 (24%), Positives = 52/126 (40%), Gaps = 20/126 (15%)
Query: 12 NYPNQEQLKAFETAFDAFLETNQQENENHQNDAFNDLLKGVFKYKVKPTKKIDSTILNEN 71
NY NQ++++ TA T Q N + D L + K ++ + S + E
Sbjct: 147 NYKNQQEIELLNTAIKNLENTLYQANHSSSPD-----LIAIAKLEI-----LKSLLEIEK 196
Query: 72 NEVEVIIEFKALKNPNEFIKKGDLNVKAFHESLLSYLTERKEGNNNLK-HLILATIKELY 130
N++EV + + G+L K +LS + E NN + H I AT ++
Sbjct: 197 NDLEVALS-------SSHYSMGELTFK--ENEILSIAPKNFEFNNEQELHNISATNYDIA 247
Query: 131 IIDANE 136
I +E
Sbjct: 248 IARLDE 253
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 26.6 bits (57), Expect = 4.3
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 690 DSNAVRKYAKERLYQELKQNP---NKDFKKALNDRIEKIKKAFK-----LTLNPPPKELK 741
++NA+ AK + ++ K P +KDF K LN +I K K A K L PK+ K
Sbjct: 11 NANALNSGAKNEV-KDAKNAPKSASKDFSKILNQKISKDKTAPKESPNHSALKATPKDAK 69
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 26.6 bits (57), Expect = 4.3
Identities = 25/87 (28%), Positives = 43/87 (48%), Gaps = 12/87 (13%)
Query: 651 ALLKSEKNKNLEYSIAEYKELVKIYKD-PKILETLTHPIKDSNAVRKYAKERLYQELKQN 709
AL+ E N++ +IA + L I ++ LE + +KD + + + E K
Sbjct: 661 ALINKEANRDAR-AIAYAQNLKGIKRELSDKLENINKDLKDFS--------KSFDEFKNG 711
Query: 710 PNKDFKKALNDRIEKIKKAFK-LTLNP 735
NKDF KA + ++ +K + K L +NP
Sbjct: 712 KNKDFSKA-EETLKALKGSVKDLGINP 737
Score = 26.2 bits (56), Expect = 5.7
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 5/47 (10%)
Query: 999 DLRDKIESVGTPLKDWDIQINYGIKTGANEAFIIPTEKREEILNACK 1045
+L DK+E++ LKD+ + K G N+ F K EE L A K
Sbjct: 686 ELSDKLENINKDLKDFSKSFD-EFKNGKNKDF----SKAEETLKALK 727
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 26.6 bits (57), Expect = 4.3
Identities = 20/61 (32%), Positives = 30/61 (48%), Gaps = 6/61 (9%)
Query: 281 LRLLESLLISFKHF-ENPF-----LTTENFENFNDLNTLFFEVLAKKNSERLPEIKEDKI 334
L L +++ KHF +N F + ENF D L E+L+K + RL E +D I
Sbjct: 276 LDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLSKYHPTRLKEYTKDGI 335
Query: 335 L 335
+
Sbjct: 336 I 336
>ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 329
Score = 26.6 bits (57), Expect = 4.3
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 283 LLESLLISFKHFENPFLTTENFENFNDLNTLFF------------EVLAKKNSERLPEIK 330
L ES L+ H + EN + F+D T+ F + L + E+ P +K
Sbjct: 19 LFESFLLDTTHLALEESSLENLKAFDDKETIEFVSQSSWRYFATHDPLKENLKEKPPHLK 78
Query: 331 EDKILEKIPYLNSSLF 346
IL L+ SLF
Sbjct: 79 NFVILRSEKNLSDSLF 94
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 381
Score = 26.6 bits (57), Expect = 4.3
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 755 KSILEEANYNGLELEALALEKQMANLFFDYRPYPKLDKSDKVVGLEHFNRYVLTSYKDLQ 814
K +LE N N + LE K+ +L ++ +K D LE N+++L SYK ++
Sbjct: 27 KGLLENEN-NVISLENFK-PKESEDLLENFS-----NKKDMQELLELLNQFILQSYK-VE 78
Query: 815 DENERYANALEWRFE-FPE---VLDDEGDF 840
E + Y EW E P+ V+++ G F
Sbjct: 79 KEFKDYKALYEWVIEILPQAIWVMNENGSF 108
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 26.6 bits (57), Expect = 4.3
Identities = 27/132 (20%), Positives = 52/132 (38%), Gaps = 15/132 (11%)
Query: 352 ELKGHEIKLLD--NKKLEIYKNSVLKKHKDYQKEKPLPLLKYLFKFLRLYKFTTTPKDIK 409
++K H + L+D +KK KN + Y K +K + + + + PK +
Sbjct: 528 QIKAHPLALVDLHHKKSVKEKNEIENLMAGYANPKDF-FVKKIAEGIGMISAAFYPKPVI 586
Query: 410 DNTDTSESRLINPSVLGLVFEKLNGYKEGSFYTPSFITSYMCKESITPIVLDKFNAIYQW 469
T +S + ++ G GS Y P+ + + + +N + W
Sbjct: 587 VRTSDFKSN---------EYMRMLG---GSSYEPNEENPMLGYRGASRYYSESYNEAFSW 634
Query: 470 DCENLKALRGEI 481
+CE L +R E+
Sbjct: 635 ECEALALVREEM 646
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 26.6 bits (57), Expect = 4.3
Identities = 26/95 (27%), Positives = 43/95 (44%), Gaps = 18/95 (18%)
Query: 672 VKIYKDPKILETLTHPIK----DSNAVRKYAKERLYQELKQNPNKDFKKALNDRIEKIKK 727
VK +K+ LE T IK DSNA+ E N + ++A + +KI
Sbjct: 310 VKNFKEA--LEGFTEKIKESPNDSNAIN---------EAFDNLETELERATENLSQKIDP 358
Query: 728 AFKLTLNPPPKELKFKKFLKEHLELYGKSILEEAN 762
+ N K L++++FL+ E + I++E N
Sbjct: 359 VLERNENYTQKALEYREFLESRKESF---IVDEKN 390
Score = 25.4 bits (54), Expect = 9.7
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 19 LKAFETAFDAFLETNQQE--NENHQNDAFNDLLKGVFKYKVKPTKKIDSTILNENNEVEV 76
+K F+ A + F E ++ + N N+AF++L + + ++KID + N +
Sbjct: 310 VKNFKEALEGFTEKIKESPNDSNAINEAFDNLETELERATENLSQKIDPVLERNENYTQK 369
Query: 77 IIEFK 81
+E++
Sbjct: 370 ALEYR 374
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 26.2 bits (56), Expect = 5.7
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 872 FYNSTADIYTYFFA--LAFHLLKEKGFSAFITSNKYTRAKYGAKL---REWLLKKTTIVS 926
F+NS++D+ TY L F+ + +K + +NK + +G WL +
Sbjct: 504 FFNSSSDVLTYGVGSDLLFNFINDKNTNFLGKNNKISVGLFGGIALAGTSWLNSQ----- 558
Query: 927 YMELNALKVFESAAVDTSIIHFI 949
++ L + SA V+T+ F+
Sbjct: 559 FVNLKTISNVYSAKVNTANFQFL 581
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 26.2 bits (56), Expect = 5.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 947 HFIKQTPSKESEFKYYEPTPNDKDDLK-STPHLLMKQNVLSTESFIFANAT 996
+++ + SKE FK + ND+ ++K ST L V ST + + ++ T
Sbjct: 116 YYVNISYSKEHNFKVGDKDKNDEKEIKMSTEELAQIYAVQSTPTIVLSDKT 166
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 26.2 bits (56), Expect = 5.7
Identities = 30/101 (29%), Positives = 45/101 (43%), Gaps = 14/101 (13%)
Query: 831 PEVLDDEGDFSGFDCIIGNPPYIRQEHIKDLKPLL------EKQYQDFYNSTADIYTYFF 884
P+ DDE FD I+ NPPY + I D PLL K + AD+
Sbjct: 301 PKHEDDEP----FDAIVSNPPY-STKWIGDNNPLLMNDERFNKAGALAPKNAADLAFTMH 355
Query: 885 ALAFHLLKEKGFSAFIT-SNKYTRAKYGAKLREWLLKKTTI 924
L++ L +G +A + R+ K+RE+L+K+ I
Sbjct: 356 MLSY--LSNQGAAAIVEFPGVLYRSGAEKKIREYLVKENFI 394
>ref|NP_222993.1| putative [Helicobacter pylori J99]
Length = 172
Score = 26.2 bits (56), Expect = 5.7
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 364 KKLEIYKNSVLKKHKDYQKEKPLPLL----KYLFKFLRLYKFTTTPKDIKDNTDTSESRL 419
K +E N VL++ + + P + FK L+L+ F P+ DN
Sbjct: 36 KAIEYAYNEVLQQRRIHSLLLFSPCMLAHKSLAFKRLQLFLFQKDPQSYMDNFYKE---- 91
Query: 420 INPSVLGLVFEKLNGYKEGSFYTPSFITSYMCKESITPIVLDK 462
+GL + KEGS F+ Y +SI +L+K
Sbjct: 92 -----VGLDAQLERFKKEGSLEELEFLLDYKYSDSIIRFLLEK 129
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 26.2 bits (56), Expect = 5.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 248 QNSLSDALKKEYKNLDDEEVMALLIAWNNRILFLRLLESLLISFK 292
+N L+ ALK+ Y+N D+ + A + A N R+ L ++FK
Sbjct: 66 KNLLASALKR-YENFDNPKNPAPIFALNERLFVQELYHGPSLAFK 109
>ref|NP_224197.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 314
Score = 25.8 bits (55), Expect = 7.4
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 104 LLSYLTERKEGNNNL--KHLILATIKELYIIDANEFEVFNKDKEIENAFKNCHDRKGNDT 161
L+S T +K G NL KH L + D + K E FK+ D +GN+T
Sbjct: 16 LISACTVKKNGVKNLSYKHESLRAYENAKDYDPTTKKATYKRNFFERHFKHHTDSQGNNT 75
Query: 162 R 162
+
Sbjct: 76 K 76
>ref|NP_223591.1| putative [Helicobacter pylori J99]
Length = 291
Score = 25.8 bits (55), Expect = 7.4
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 649 DKALLKSEKNKNLEYSIAEYKELVKIYKDPKILETLTHPIKDSNAVRKYAKERLYQELKQ 708
+K ++ K +L + + L +Y K TL + Y ++RLY LK
Sbjct: 96 EKIRIEQIKRDDLYIVLDGQQRLTSLYIGLKGTRTLKKKNARYDNPNAYEEKRLYLNLKH 155
Query: 709 NPNKD 713
PN D
Sbjct: 156 QPNMD 160
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 25.8 bits (55), Expect = 7.4
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 347 DKTPLELKGHEIKLLDNKKLEIYKNSVLKKHKDYQKEKPLPLLKYLFKFLRLYKFTTTPK 406
+K + L GHE++LLD + K+++L K + K L L L LY K
Sbjct: 47 NKRKIALNGHEVELLDTGGMA--KDALLSK-----EIKALNLKAAQMSDLILY--VVDGK 97
Query: 407 DIKDNTDTSESRLI---NPSVLGLVFEKLNGYKE-------GSFYTP-SFITSYMCKESI 455
I + D R + NP+ LV K++ KE SF TP SF S I
Sbjct: 98 SIPSDEDLKLFREVFKTNPNCF-LVINKIDNDKEKERSYAFSSFGTPKSFNISVSHNRGI 156
Query: 456 TPIVLDKFNAI 466
+ ++ NA+
Sbjct: 157 SALIDAVLNAL 167
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 25.8 bits (55), Expect = 7.4
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 320 KKNSERLPEIKEDKILEKIPYLNSS----LFDKTPLELKGHEIKLLDNKKLEIYKNSVLK 375
K E E+KE K P L + + +K E G ++ +N E+ +N +
Sbjct: 484 KSAPEETKEVKEFKFPPLKPKLTTETTAEMQEKETKEAVGKALQTKENDTKEVQENETKE 543
Query: 376 KHKDYQKEKPLPLLKYLFKFLRLYKFTTTPKDIK 409
+ KE P L +++ L + + +IK
Sbjct: 544 TKEAQPKEAPTALQEFMANHSNLIEEIKSEFEIK 577
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 25.8 bits (55), Expect = 7.4
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 679 KILETLTHPIKDSNAVRKYAKERLYQELKQNPNKDFKKALN--DRIEKIKKAFKLTLNPP 736
K++E L NA+ YA + ++L + KKA N D I+K K NPP
Sbjct: 446 KVIEQLFEEKLIFNALDLYALK--LEDLMRLDKFKIKKAQNLLDAIQKSK-------NPP 496
Query: 737 PKEL-------KFKKFLKEHLELYGKSILEEANYNGLELEALALE 774
L K + L YG ++LE++ LE+E +E
Sbjct: 497 LWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGVE 541
>ref|NP_222742.1| putative [Helicobacter pylori J99]
Length = 523
Score = 25.8 bits (55), Expect = 7.4
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 620 KNTNALETLPNIDINIKCANS-------LISRFALKDKALLKSEKNKNLEYSIAEYKELV 672
K +N + + I I + C N LIS + ++ A++ S N Y I+ YK +
Sbjct: 40 KESNQVSFIAMIIIVLFCVNGALFLALGLISAYLMRWSAIVFSWLNSVAFYFISAYKVFL 99
Query: 673 KIYKDPKILETLTHPI 688
+L T TH +
Sbjct: 100 NKSMMGNVLNTNTHEV 115
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 25.4 bits (54), Expect = 9.7
Identities = 46/236 (19%), Positives = 79/236 (32%), Gaps = 54/236 (22%)
Query: 114 GNNNLKHLILATIKELY----------IIDANEFEVFNKDKEIENAFKNCHDRKGNDTRT 163
G++ K ++L +KEL ++ AN EVF ++EN + +
Sbjct: 9 GDSEKKSILLEGLKELEYRGYDSAGLAVLSANRLEVFKTQGKLENL--------RTELKN 60
Query: 164 KAFYD----ACQKRLNEFDRSLKYHYIPLKKENLALIYQALSPNFLLKIPKYSDANTLNK 219
K F + R + + P ENLAL++ + N+ +L K
Sbjct: 61 KEFLNFGVSIAHTRWATHGKPSSANAHPHFTENLALVHNGIIENYA----------SLKK 110
Query: 220 DFYEELLYILGLEEQNDKGKILIKPSRTQNSLSDALKKEYKNLDDEEVMALLIAWNNRIL 279
+ + L + +L + +++ L A +K L + +L L
Sbjct: 111 ELENKGHAFLSQTDTEVIAHLLEETLKSEGDLLKAFEKSISLLKGSYAILMLHKRAKESL 170
Query: 280 FLRLLESLLISFKHFENPFLTTE----------------------NFENFNDLNTL 313
F S LI K E F + + ENF DLN +
Sbjct: 171 FYAKSSSPLIVGKGKEGVFFASSLSVLAPKVDQFVILEENSVGQISLENFKDLNNI 226
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 25.4 bits (54), Expect = 9.7
Identities = 17/63 (26%), Positives = 33/63 (51%), Gaps = 3/63 (4%)
Query: 287 LLISFKHFEN---PFLTTENFENFNDLNTLFFEVLAKKNSERLPEIKEDKILEKIPYLNS 343
L I+FK N ++ T + DL++ F + +N+++ E EDK ++I ++
Sbjct: 199 LKIAFKSPNNLIPSYVITNGYRPVADLDSYTFSGVLLENTDKKIEKIEDKDAKEIKRFSN 258
Query: 344 SLF 346
+LF
Sbjct: 259 TLF 261
>ref|NP_223802.1| putative PYRROLINE-5-CARBOXYLATE REDUCTASE [Helicobacter pylori
J99]
Length = 257
Score = 25.4 bits (54), Expect = 9.7
Identities = 39/166 (23%), Positives = 70/166 (41%), Gaps = 26/166 (15%)
Query: 619 GKNTNALETLPNIDINIKCANSLISRFALKDKALLKSEKNKNLEYSIAEYKELVKIYKDP 678
G N AL N +KC ++ S+FAL A+ + K++ SI+E K
Sbjct: 94 GVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCE----KSVAPSISE--------KAL 141
Query: 679 KILETLTHPIKDSN------AVRKYAKERLYQELKQNPNKD--FKKALN--DRIEKIKKA 728
I+E+ + ++ N +V + L + KD ++ LN D +E +K +
Sbjct: 142 NIIESFGNCVRVGNEEQVDSSVATNGSALAFLSLVASSLKDAGIREGLNAKDSLELVKMS 201
Query: 729 F----KLTLNPPPKELKFKKFLKEHLELYGKSILEEANYNGLELEA 770
F KL P+ + + + + G S+LE+ G ++A
Sbjct: 202 FKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGVRGAFIKA 247
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 25.4 bits (54), Expect = 9.7
Identities = 22/85 (25%), Positives = 37/85 (42%), Gaps = 10/85 (11%)
Query: 10 NTNYPNQEQLKAFETAFDAFLETNQQENE--------NHQNDAFNDLLKGVFKYKVKPTK 61
N + NQE+++ A + + NQ +NE N+ N+A + K K T
Sbjct: 42 NNPFLNQERIQTISNAQNKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTPTEKQAETY 101
Query: 62 KIDSTILNENNEVEVIIEFKALKNP 86
+ ST+ +N E V++ NP
Sbjct: 102 YLQSTL--QNIEKIVMLSGGVASNP 124
>ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicobacter pylori J99]
Length = 167
Score = 25.4 bits (54), Expect = 9.7
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 8 LPNTNYPNQ-EQLKAFETAFDAFLETNQQ--ENENHQNDAFNDLLKGVFKYKVKPTKKID 64
L N P Q + A E F+ + Q+ E+E H +++ N+++ K K T
Sbjct: 61 LNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKDHATFNFL 120
Query: 65 STILNENNEVEVII-----EFKALKNPNEFIKKGDLNVKAFHES 103
+ E +E EV+ + + + N N + D VK +S
Sbjct: 121 QWYVAEQHEEEVLFKDILDKIELIGNENHGLYLADQYVKGIAKS 164
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 25.4 bits (54), Expect = 9.7
Identities = 22/85 (25%), Positives = 37/85 (42%), Gaps = 10/85 (11%)
Query: 10 NTNYPNQEQLKAFETAFDAFLETNQQENE--------NHQNDAFNDLLKGVFKYKVKPTK 61
N + NQE+++ A + + NQ +NE N+ N+A + K K T
Sbjct: 47 NNPFLNQERIQTISNAQNKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTPTEKQAETY 106
Query: 62 KIDSTILNENNEVEVIIEFKALKNP 86
+ ST+ +N E V++ NP
Sbjct: 107 YLQSTL--QNIEKIVMLSGGVASNP 129
>ref|NP_223040.1| putative [Helicobacter pylori J99]
Length = 293
Score = 25.4 bits (54), Expect = 9.7
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 265 EEVMALLIAWNNRILFLRLLESLLISFKHFENPFLTTENFENFNDLNTLFFEVLAKKNSE 324
+++ AL + + +L L L+ P LT +N + DL + ++ +
Sbjct: 136 KDLKALFMQKKVKKTYLALAHGLVDKSIIINKPILTPQNIQK--DLR-----IRSQISPL 188
Query: 325 RLPEIKEDKILEKIPYLNSSLFDKTPLELKGHEIKL 360
P I + L P+L+ SL TPL + H+I+L
Sbjct: 189 GKPSITLVEPLSYNPFLDISLLKITPLTGRTHQIRL 224
>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 25.4 bits (54), Expect = 9.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 650 KALLKSEKNKNLEYSIAEYKELVKIYKDPKILETLTHPIKDS 691
K +L+ + +++E+KE+ YK KIL T ++D+
Sbjct: 48 KGVLQEIPMQRAVKALSEFKEIALKYKSKKILCVATSAVRDA 89
>ref|NP_222981.1| putative [Helicobacter pylori J99]
Length = 431
Score = 25.4 bits (54), Expect = 9.7
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 433 NGYKEGSFYTPSFITSYMCKESITPIVLDKFNAIYQWDCENLKALRGEIDRNFSNEKAKE 492
N KEG S I Y C E + L+ F + D R ++N + A+
Sbjct: 178 NRKKEGLDLLQSHIDRYGCSEQLCQKALNTFTQFNELDLAKTTFAR-LYEKNPIVQNAQF 236
Query: 493 YLNTLLTLRICDPA 506
Y+ L+ L+ D A
Sbjct: 237 YIGVLILLKEFDKA 250
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 25.4 bits (54), Expect = 9.7
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 716 KALNDRIEKIKKAFKLTLNPPPKELKFKKFLKEHLELYGKSILEEANYNGLELEALALEK 775
K N++ ++++AF LK +FL++ +L+ K+ LEE ++ ELE L+ E
Sbjct: 499 KYANEKKTQVEEAF----------LKVAEFLEKVEKLHEKNKLEELDFE--ELENLSAEI 546
Query: 776 QMANLFFD 783
FD
Sbjct: 547 DNVKELFD 554
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.137 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,562,335
Number of Sequences: 1491
Number of extensions: 86046
Number of successful extensions: 443
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 125
length of query: 1279
length of database: 494,079
effective HSP length: 89
effective length of query: 1190
effective length of database: 361,380
effective search space: 430042200
effective search space used: 430042200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)