BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646127|ref|NP_208309.1| hypothetical protein
[Helicobacter pylori 26695]
(95 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 95 2e-22
ref|NP_224004.1| putative [Helicobacter pylori J99] 61 3e-12
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 27 0.055
ref|NP_223458.1| GTP CYCLOHYDROLASE II/3,4-DIHYDROXY-2-BUTA... 27 0.055
ref|NP_223959.1| putative [Helicobacter pylori J99] 27 0.072
ref|NP_223088.1| putative [Helicobacter pylori J99] 27 0.072
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 26 0.12
ref|NP_222950.1| putative histidine kinase sensor protein [... 26 0.12
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 25 0.27
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 25 0.27
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 25 0.36
ref|NP_222780.1| putative [Helicobacter pylori J99] 24 0.61
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 0.79
ref|NP_223534.1| putative [Helicobacter pylori J99] 23 0.79
ref|NP_222893.1| putative [Helicobacter pylori J99] 23 0.79
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 23 1.0
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 23 1.0
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 23 1.0
ref|NP_223241.1| SIGNAL PEPTIDASE I [Helicobacter pylori J99] 23 1.0
ref|NP_223023.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223712.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223653.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 23 1.4
ref|NP_223223.1| BETA-KETOACYL-ACP SYNTHASE I [Helicobacter... 23 1.4
ref|NP_223176.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 23 1.4
ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylor... 22 1.8
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 22 1.8
ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUB... 22 1.8
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 22 1.8
ref|NP_224131.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 22 2.3
ref|NP_223749.1| putative lipopolysaccharide biosynthesis p... 22 2.3
ref|NP_223748.1| putative lipopolysaccharide biosynthesis p... 22 2.3
ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99] 22 2.3
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 22 2.3
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 22 2.3
ref|NP_223962.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 22 3.0
ref|NP_223886.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223618.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223577.1| RECOMBINATION PROTEIN [Helicobacter pylori... 22 3.0
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 22 3.0
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 22 3.0
ref|NP_223876.1| CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN [... 21 3.9
ref|NP_222766.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 3.9
ref|NP_222738.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_223974.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 21 5.2
ref|NP_223243.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223204.1| cag island protein [Helicobacter pylori J99] 21 5.2
ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Hel... 21 5.2
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 21 5.2
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 20 6.7
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 20 6.7
ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [He... 20 6.7
ref|NP_223334.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 20 6.7
ref|NP_222769.1| sodium/proline symporter [Helicobacter pyl... 20 6.7
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 95.1 bits (235), Expect = 2e-22
Identities = 46/54 (85%), Positives = 47/54 (86%)
Query: 4 FAHISLKDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFL 57
F I LK FIKK+NPQ P KETIENFEKEINSLLEN PRQDDEEFQKNEINKFL
Sbjct: 3 FTRIPLKVFIKKYNPQEPKKETIENFEKEINSLLENVPRQDDEEFQKNEINKFL 56
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 23 KETIENFEKEINSLLENAPRQDDEEFQKNE 52
K + EKEI++L+ DEE + E
Sbjct: 1220 KANTQKLEKEIDALVYQLYHLTDEEIKTIE 1249
>ref|NP_224004.1| putative [Helicobacter pylori J99]
Length = 248
Score = 61.2 bits (147), Expect = 3e-12
Identities = 27/40 (67%), Positives = 34/40 (84%)
Query: 56 FLGKVSSIEKHYTYKSVALKNAFINNDKLLKHVFLSDVRN 95
F+G+VSS+E HYTYKS LKNAF++ KLL+HVFLS V+N
Sbjct: 209 FVGEVSSVEDHYTYKSAVLKNAFLSEAKLLRHVFLSGVKN 248
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 27.3 bits (59), Expect = 0.055
Identities = 22/96 (22%), Positives = 48/96 (49%), Gaps = 9/96 (9%)
Query: 9 LKDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIE-KHY 67
L +FI++H+ + + ++ E + L+NA +D++ K + K +++ K+
Sbjct: 667 LDEFIEEHSNEEGLFDGLKINESVLKKELKNATDLEDKQILKTALEWLEAKNKALKMKNK 726
Query: 68 TYKSVAL------KNAFIN--NDKLLKHVFLSDVRN 95
Y+ + L KN IN D ++K +L+ ++N
Sbjct: 727 AYEELELKAFHQYKNLEINEIKDLIIKDKWLNSLKN 762
>ref|NP_223458.1| GTP CYCLOHYDROLASE II/3,4-DIHYDROXY-2-BUTANONE 4- PHOSPHATE
SYNTHASE [Helicobacter pylori J99]
Length = 344
Score = 27.3 bits (59), Expect = 0.055
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 9 LKDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHYT 68
L DF KHN +T + ++ E SLL+ Q++ EF K++ + + HY
Sbjct: 179 LSDFAIKHNLKTLYVSDLISYRLENESLLKMF-CQEEREFLKHQTQCYTFLDHQQKNHYA 237
Query: 69 YK 70
+K
Sbjct: 238 FK 239
>ref|NP_223959.1| putative [Helicobacter pylori J99]
Length = 376
Score = 26.9 bits (58), Expect = 0.072
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 7 ISLKDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIE 64
++ K++I P TP F ++ N+L D F +NE K L K +I+
Sbjct: 144 LNFKEYISFFKPNTPKNTLFNRFLRDGNAL--------DSLFTENEQEKILKKQENIQ 193
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 26.9 bits (58), Expect = 0.072
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Query: 13 IKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHYTYK 70
I K N T T T EN K+ LLE Q E ++NE+ K + + S +E+ + K
Sbjct: 29 ITKEN-MTETNTTEENTPKDAPILLEEKRAQTLELKEENEVAKKIDEKSLLEEIHKKK 85
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 26.2 bits (56), Expect = 0.12
Identities = 17/71 (23%), Positives = 34/71 (46%), Gaps = 1/71 (1%)
Query: 20 TPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHYTYKSVALKNAFI 79
T +E++ENF+ L+E E + E++ + K I+ Y AL + F
Sbjct: 177 TADQESVENFKNARKDLIEGVLNLRKEILKDKELHALIKKKYEIKNTTGYSLNALID-FE 235
Query: 80 NNDKLLKHVFL 90
+ +++ H+F+
Sbjct: 236 DPIEIISHLFI 246
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori
J99]
Length = 381
Score = 26.2 bits (56), Expect = 0.12
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 25 TIENFE-KEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHY-TYKSV 72
++ENF+ KE LLEN + D + +N+F+ + +EK + YK++
Sbjct: 38 SLENFKPKESEDLLENFSNKKDMQELLELLNQFILQSYKVEKEFKDYKAL 87
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 25.0 bits (53), Expect = 0.27
Identities = 18/70 (25%), Positives = 31/70 (43%), Gaps = 1/70 (1%)
Query: 5 AHISLKDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKV-SSI 63
+H+SL F + K + + + S L+N P + DE KN F+ + +
Sbjct: 342 SHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKL 401
Query: 64 EKHYTYKSVA 73
E + K+VA
Sbjct: 402 ELELSQKNVA 411
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 25.0 bits (53), Expect = 0.27
Identities = 16/65 (24%), Positives = 28/65 (42%), Gaps = 2/65 (3%)
Query: 24 ETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHYTYKSVALKNAFINNDK 83
E +EN + N L +P++ +E QKNE + + K KS++ +D
Sbjct: 19 EALENDGSKPNDLA--SPKETPKEAQKNEAQNETSQSNQTPKEMKVKSISYVGLSYMSDM 76
Query: 84 LLKHV 88
L +
Sbjct: 77 LANEI 81
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 24.6 bits (52), Expect = 0.36
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 24 ETIENFEKEINSL----LENAPRQDDEEFQKNEINKFLGKVSSIEKHYTYKSVALKNAFI 79
E I + KEI+S+ L+N D+ + N+ +K + + TY+ KN ++
Sbjct: 559 EAINSPNKEISSVATEFLKNIFSGFDDALKTNQWDKVEKTLKDLS---TYQQEHAKNLYL 615
Query: 80 NNDKLLKHVFLS 91
++ K+ +FL+
Sbjct: 616 SSSKVDSEIFLN 627
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 23.9 bits (50), Expect = 0.61
Identities = 10/36 (27%), Positives = 16/36 (43%)
Query: 17 NPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNE 52
N E +N E E+ EN ++ D ++NE
Sbjct: 329 NDSNAINEAFDNLETELERATENLSQKIDPVLERNE 364
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.5 bits (49), Expect = 0.79
Identities = 17/69 (24%), Positives = 36/69 (51%), Gaps = 6/69 (8%)
Query: 30 EKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHYTYKSVALKNAFINNDKL---LK 86
E+E+ SL +D + + N+ N+ + + + KH + K LK + +KL L+
Sbjct: 87 ERELRSL---NIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELE 143
Query: 87 HVFLSDVRN 95
++ ++V+N
Sbjct: 144 NLVENEVKN 152
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 23.5 bits (49), Expect = 0.79
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 54 NKFLGKVSSIEKHYTYKSVALKNAFINNDKLLKH 87
N+ K+ SIE + + S+ KN F + ++ H
Sbjct: 543 NECYAKLISIENSFQHASITTKNPFKQENIVIYH 576
>ref|NP_222893.1| putative [Helicobacter pylori J99]
Length = 180
Score = 23.5 bits (49), Expect = 0.79
Identities = 22/74 (29%), Positives = 35/74 (46%), Gaps = 5/74 (6%)
Query: 24 ETIENFEKE--INSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHYTYKSVALKNAFINN 81
+T FEK+ + ++ A R +FQ+ +N L S I+KH + N + N
Sbjct: 12 DTSHYFEKKPGLGERMDYAGRCYYNKFQR--VNAMLTS-SLIQKHLKREIEIAHNLILRN 68
Query: 82 DKLLKHVFLSDVRN 95
DK+ VF + RN
Sbjct: 69 DKVENIVFDYNGRN 82
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 641
Score = 23.1 bits (48), Expect = 1.0
Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 5/40 (12%)
Query: 52 EINKFLGKVSSIEKH-----YTYKSVALKNAFINNDKLLK 86
++ LG S I++ + K +AL AF N K+LK
Sbjct: 42 KLKALLGDFSEIKEEGYGLDFVGKKIALNQAFKKNHKILK 81
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 23.1 bits (48), Expect = 1.0
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 7 ISLKDFIKKHNPQTPTKETIENFEKEINSLLE-----NAPRQDDEEFQKN 51
IS+ + + + QTP+KE E+E+ +L E P+ ++ +KN
Sbjct: 409 ISVTELLAQIKNQTPSKECRALNEEEVKTLEEVKNIIKTPKPLQKDLKKN 458
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 23.1 bits (48), Expect = 1.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 47 EFQKNEINKFLGKVSSIEKH----YTYKSVALKN 76
E ++NE K L S++EKH Y K ++ KN
Sbjct: 339 EIEENEFKKLLEVNSALEKHANNLYKGKELSGKN 372
>ref|NP_223241.1| SIGNAL PEPTIDASE I [Helicobacter pylori J99]
Length = 290
Score = 23.1 bits (48), Expect = 1.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 10 KDFIKKHNPQTPTKE 24
KD+I KH P TKE
Sbjct: 134 KDYISKHYPNALTKE 148
>ref|NP_223023.1| putative [Helicobacter pylori J99]
Length = 79
Score = 23.1 bits (48), Expect = 1.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 26 IENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHYT 68
I+NF+K + +DDEE KNE+ + + + H T
Sbjct: 37 IKNFKKAV---------KDDEEEAKNELKTLDAQATQTKVHET 70
>ref|NP_223712.1| putative [Helicobacter pylori J99]
Length = 78
Score = 22.7 bits (47), Expect = 1.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 23 KETIENFEKEINSLLENAPRQD-DEEFQKNEINKFLGKVSS 62
KE N E LL++ + E+ NE+ K L K+SS
Sbjct: 34 KERFHNQELNALELLKDYLHESCQNEYLHNELQKLLEKISS 74
>ref|NP_223653.1| putative [Helicobacter pylori J99]
Length = 177
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 24 ETIENFEKEINSLLENAPRQDDEEFQK-NEINK 55
+ I+N+++E N+L+ N + E++K +NK
Sbjct: 16 DIIKNYQREKNALIYNKQVERTREYRKPKPVNK 48
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 22.7 bits (47), Expect = 1.4
Identities = 21/81 (25%), Positives = 33/81 (39%), Gaps = 8/81 (9%)
Query: 14 KKHNPQTPTKETIENFEKEINSLLENAPRQDDE-------EFQKNEINKFLGKVSSIEKH 66
+K N T+E K+ N LENA ++ ++ E +K + F K +EK
Sbjct: 514 EKLNVLIENSSTLERELKQKNEHLENALKEQEDLKNAWLLEMEKQK-EIFHHKKLELEKS 572
Query: 67 YTYKSVALKNAFINNDKLLKH 87
Y LK+ + D H
Sbjct: 573 YQQALNILKSEVASKDTSSMH 593
Score = 21.2 bits (43), Expect = 3.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 30 EKEINSLLENAPRQDDEEFQKNE 52
++++N L+EN+ + E QKNE
Sbjct: 513 KEKLNVLIENSSTLERELKQKNE 535
>ref|NP_223223.1| BETA-KETOACYL-ACP SYNTHASE I [Helicobacter pylori J99]
Length = 412
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/21 (47%), Positives = 15/21 (70%), Gaps = 2/21 (9%)
Query: 66 HYT--YKSVALKNAFINNDKL 84
HY Y+S+ALKN F + +K+
Sbjct: 309 HYNDWYESIALKNVFGSKEKV 329
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/38 (31%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 15 KHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNE 52
+ N + +E I+ K+ N ENAP +++ +QK E
Sbjct: 257 RENKREIKQEAIKE-PKKANQGTENAPTLEEKNYQKAE 293
Score = 20.8 bits (42), Expect = 5.2
Identities = 15/51 (29%), Positives = 23/51 (44%), Gaps = 4/51 (7%)
Query: 15 KHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEK 65
K N + KE E+EIN N P ++ K+ N + K S+ +K
Sbjct: 347 KGNEKVNAKEN----EREINQESANEPSSENNATLKDTENTSVLKESAAKK 393
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 22.7 bits (47), Expect = 1.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 8 SLKDFIKKHNPQTPTKETIENFEKEINSLLE 38
++K+ K H + E FEK++N +E
Sbjct: 241 NVKEIAKLHEKIPISAEDANEFEKKVNDFIE 271
>ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 806
Score = 22.3 bits (46), Expect = 1.8
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 17 NPQTPTKETIENFEKEINSLLENAPRQ-----DDEEFQKNEINKFLGKVSSIEKHYTYKS 71
+P+T T E IE +KE +L + + D ++ K E F + EK Y+
Sbjct: 92 HPKTWTYENIEAMQKEFEALGFSFSKNREFATSDPDYTKFEQQFF---IDLWEKGLIYRK 148
Query: 72 VALKNAFINNDKLLKHVFLSDVR 94
A+ N N+ +L + + D R
Sbjct: 149 KAMLNWCPNDKTVLANEQVIDGR 171
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 22.3 bits (46), Expect = 1.8
Identities = 16/58 (27%), Positives = 25/58 (42%), Gaps = 5/58 (8%)
Query: 24 ETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHYTYK-----SVALKN 76
+ IE F+ + L + + D+E K + +L K IE +K ALKN
Sbjct: 10 QVIETFKAMGYAYLGDLTKSDNENINKESLKAWLIKNQKIEPERWHKIEQEIHTALKN 67
>ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 409
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 11 DFIKKHNPQTPTKETIENFEKEINSLLEN 39
DF+ ++N T F KE+N L+ N
Sbjct: 194 DFLDENNKPYQTSGGKMKFSKELNRLIPN 222
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 22.3 bits (46), Expect = 1.8
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 24 ETIENFEKEINSLLENAPRQDDEEFQKNEINK 55
E + + +KE+ S+ E ++DE + ++ K
Sbjct: 480 EVVPDEDKEVKSMFEEMDEEEDELNKLGDLRK 511
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 21.9 bits (45), Expect = 2.3
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 10 KDFIKKHNP--QTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEK 65
KD KK + Q TK T N + N ++ ++++E E+N + + I++
Sbjct: 22 KDEPKKSSQSHQNNTKTTQNNQINQPNKDIKKIEHEEEDEKVTKEVNDLINNENKIDE 79
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 21.9 bits (45), Expect = 2.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 9 LKDFIKKHNPQTPTKETIENFEKEINSLLEN 39
L+D +K+ N + +E FE + +L+ N
Sbjct: 166 LEDALKQSNEPVIIEPFLEGFELSVTALIAN 196
>ref|NP_223749.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 398
Score = 21.9 bits (45), Expect = 2.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 10 KDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQK 50
+D K + P KE K+I L+ P DE+F K
Sbjct: 62 EDKTKLNQITEPFKEFAVLEVKDIEPFLDTIPNPFDEDFTK 102
>ref|NP_223748.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 393
Score = 21.9 bits (45), Expect = 2.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 10 KDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQK 50
+D K + P KE K+I L+ P DE+F K
Sbjct: 62 EDKTKLNQITEPFKEFAVLEVKDIEPFLDTIPNPFDEDFTK 102
>ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 375
Score = 21.9 bits (45), Expect = 2.3
Identities = 15/56 (26%), Positives = 28/56 (49%), Gaps = 7/56 (12%)
Query: 41 PRQDDEEFQK------NEINKFLGKVSSIEKHYTYKSVALKNAFI-NNDKLLKHVF 89
P +++E Q+ N N G+ S+E+ + +ALK+ FI ND+ ++
Sbjct: 144 PSLNEKELQEVDLVILNSPNNPTGRTLSLEELIAWVKLALKHDFILINDECYSEIY 199
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 21.9 bits (45), Expect = 2.3
Identities = 12/45 (26%), Positives = 19/45 (41%)
Query: 13 IKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFL 57
I + N + TK F+K+ N +NA D + N N +
Sbjct: 655 IIQDNMHSNTKMQFMLFDKDANDFSQNALHSDKPSLKLNANNALI 699
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 21.9 bits (45), Expect = 2.3
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 16 HNPQTPTKETIENFEKEINSLLENAP 41
HN TP K IEN E S+L +P
Sbjct: 139 HNQNTPFKAFIEN---EFGSVLSFSP 161
>ref|NP_223962.1| putative [Helicobacter pylori J99]
Length = 64
Score = 21.6 bits (44), Expect = 3.0
Identities = 7/22 (31%), Positives = 17/22 (76%), Gaps = 1/22 (4%)
Query: 18 PQTPT-KETIENFEKEINSLLE 38
P +P+ +++++NFEKE+ ++
Sbjct: 30 PSSPSDRKSVKNFEKELTEFIK 51
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 21.6 bits (44), Expect = 3.0
Identities = 12/39 (30%), Positives = 18/39 (45%)
Query: 10 KDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEF 48
K F+KK N + T+ E+E+ +L D E F
Sbjct: 783 KAFLKKLNKEVGQNITLTKEEEELTGVLYLDESLDQEVF 821
>ref|NP_223886.1| putative [Helicobacter pylori J99]
Length = 340
Score = 21.6 bits (44), Expect = 3.0
Identities = 16/58 (27%), Positives = 25/58 (42%), Gaps = 2/58 (3%)
Query: 4 FAHISLKDFI--KKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGK 59
FAHI + K+ P KE +EN+ K L E ++ E F+ + G+
Sbjct: 266 FAHIKTTGLMDAKEVLGYAPPKEIVENYAKNALRLKEAGYKRVFEIFRLWHLQSMQGQ 323
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.6 bits (44), Expect = 3.0
Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 4/43 (9%)
Query: 8 SLKDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQK 50
SL + +K N P+K+ +EN KE + N DEE K
Sbjct: 1822 SLSSYDEKGNLIAPSKKELENELKEKEAKSVNL----DEEIAK 1860
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 4 FAHISLKDFIKKHNP 18
FA I D I KHNP
Sbjct: 1656 FADIVSNDDILKHNP 1670
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 21.6 bits (44), Expect = 3.0
Identities = 14/47 (29%), Positives = 24/47 (50%)
Query: 9 LKDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINK 55
+K I++ Q P ++ N E NS +E+ +Q+ + K EI K
Sbjct: 116 VKKVIEEVRDQKPYLASLINKPNEFNSEIESIMQQNLIKNAKLEIEK 162
>ref|NP_223577.1| RECOMBINATION PROTEIN [Helicobacter pylori J99]
Length = 193
Score = 21.6 bits (44), Expect = 3.0
Identities = 12/29 (41%), Positives = 16/29 (54%), Gaps = 3/29 (10%)
Query: 50 KNEINKFLGKVSSIEKHYTYKSVALKNAF 78
KN +N FL V +EK +V K+AF
Sbjct: 5 KNSLNHFLNLVDCLEK---IPNVGKKSAF 30
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 21.6 bits (44), Expect = 3.0
Identities = 14/59 (23%), Positives = 24/59 (39%)
Query: 9 LKDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHY 67
LKD K + KE++ + ++ A R++ E+ E K L + K Y
Sbjct: 704 LKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKKSVKAY 762
Score = 20.4 bits (41), Expect = 6.7
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 9 LKDFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHY 67
+KD K + KE++ + ++ A R++ E+ E K L + K Y
Sbjct: 963 VKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAY 1021
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 21.6 bits (44), Expect = 3.0
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 28 NFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHY 67
NFE+ I+ + E +D ++ E + K + K+Y
Sbjct: 441 NFERRIHEMDEELDTKDFDQIWFEENQRMFEKSVKLTKNY 480
>ref|NP_223876.1| CARBAMOYL-PHOSPHATE SYNTHASE SMALL CHAIN [Helicobacter pylori J99]
Length = 375
Score = 21.2 bits (43), Expect = 3.9
Identities = 10/35 (28%), Positives = 18/35 (50%)
Query: 8 SLKDFIKKHNPQTPTKETIENFEKEINSLLENAPR 42
SL ++ H TIE+ ++ +L+NAP+
Sbjct: 113 SLIKTLRHHGCLMMIASTIEHDRNKLEEVLKNAPK 147
>ref|NP_222766.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 185
Score = 21.2 bits (43), Expect = 3.9
Identities = 10/44 (22%), Positives = 19/44 (42%)
Query: 11 DFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEIN 54
+ + KH +E++ + +LEN D+ F K +N
Sbjct: 56 NILSKHQIWQSNQESVTKVKGTFVFILENDLHLDENSFYKKLLN 99
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 21.2 bits (43), Expect = 3.9
Identities = 14/52 (26%), Positives = 23/52 (43%), Gaps = 7/52 (13%)
Query: 39 NAPRQDDEEFQKNEINKFLGKVSSIEKH-------YTYKSVALKNAFINNDK 83
N ++ +EF E+ K + ++ S +KH S L N + N DK
Sbjct: 147 NERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRAEVSEILNNTYSNLDK 198
>ref|NP_223974.1| putative [Helicobacter pylori J99]
Length = 174
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 7 ISLKDFIKKHNPQTPTKETIENFEK 31
+ L DF K PT E++ +F+K
Sbjct: 78 VLLSDFEIKQERAVPTIESVLHFQK 102
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 20.8 bits (42), Expect = 5.2
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 23 KETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIEKHYTY-----KSVALKNA 77
K + N +N+ + Q D F K + G +SS+ TY KSV K+
Sbjct: 768 KASFTNDTFNVNNQFKINGAQTDFTFSKGVVFNMQGLLSSLSVGTTYQLLNAKSVGYKD- 826
Query: 78 FINNDKL 84
NN+ L
Sbjct: 827 --NNNAL 831
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/43 (25%), Positives = 22/43 (50%)
Query: 22 TKETIENFEKEINSLLENAPRQDDEEFQKNEINKFLGKVSSIE 64
TK+ N + L E+ +D++ K E +KF ++ S++
Sbjct: 621 TKDYFYNPSLGLRYLNESPKEPEDKQNDKIEASKFYQQLESLK 663
>ref|NP_223204.1| cag island protein [Helicobacter pylori J99]
Length = 306
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/32 (34%), Positives = 18/32 (55%)
Query: 23 KETIENFEKEINSLLENAPRQDDEEFQKNEIN 54
++ IE FEK+ NS ++ + + NEIN
Sbjct: 84 QKNIEAFEKKNNSSVQKKAAKHRGLQELNEIN 115
>ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Helicobacter pylori J99]
Length = 323
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 74 LKNAFINNDKLLK 86
L+NA ++NDK LK
Sbjct: 131 LENASVSNDKTLK 143
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 28 NFEKEINSLLENAPRQDDE 46
+FE E +LEN Q DE
Sbjct: 623 SFEAESGQVLENLALQSDE 641
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori
J99]
Length = 457
Score = 20.4 bits (41), Expect = 6.7
Identities = 9/26 (34%), Positives = 16/26 (60%)
Query: 24 ETIENFEKEINSLLENAPRQDDEEFQ 49
+T N EKEI +L++ P+ E++
Sbjct: 2 DTNNNIEKEILALVKQNPKVSLIEYE 27
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 20.4 bits (41), Expect = 6.7
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 11 DFIKKHNPQTPTKETIENFEKEINSLLENAPRQDDEEFQKNEIN 54
DFIK+ + + + E +E ++ N +E+ Q + E N
Sbjct: 185 DFIKRVDTLSLSDEDLERIREKKNQEIEDCLMQLNNNIYDKEKN 228
>ref|NP_223981.1| MAGNESIUM AND COBALT TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 318
Score = 20.4 bits (41), Expect = 6.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 59 KVSSIEKHYTYKSVALKNAFINN 81
+VSS+ K++ S NAF N
Sbjct: 61 RVSSVTKYWEDSSSVTINAFFTN 83
>ref|NP_223334.1| putative [Helicobacter pylori J99]
Length = 263
Score = 20.4 bits (41), Expect = 6.7
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 42 RQDDEEFQKNEINKFLGKVSSIEKHYTYKSVALKNAFINNDKLLK 86
+QD + EI K K KSV L N+ LLK
Sbjct: 120 KQDAQNTNTKEIKFLSAKSHDFGKEMDSKSVELSNSNTFIQSLLK 164
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 20.4 bits (41), Expect = 6.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 56 FLGKVSSIEKHYTYKSVALKNA 77
F SS K+YTY +++A
Sbjct: 136 FFDFASSYYKYYTYNDYGMRDA 157
>ref|NP_222769.1| sodium/proline symporter [Helicobacter pylori J99]
Length = 496
Score = 20.4 bits (41), Expect = 6.7
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 5 AHISLKDFIKKHNPQTPTKETIENFEKEINSL 36
A +++ F + ++ TKE E KEI SL
Sbjct: 463 ASVAIVAFSLFSSVRSGTKEAFETMLKEIESL 494
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,416
Number of Sequences: 1491
Number of extensions: 5712
Number of successful extensions: 67
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of query: 95
length of database: 494,079
effective HSP length: 71
effective length of query: 24
effective length of database: 388,218
effective search space: 9317232
effective search space used: 9317232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)