BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646128|ref|NP_208310.1| hypothetical protein
[Helicobacter pylori 26695]
(250 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 31 0.027
ref|NP_224180.1| putative [Helicobacter pylori J99] 30 0.047
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 27 0.52
ref|NP_223788.1| putative [Helicobacter pylori J99] 26 0.88
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 26 0.88
ref|NP_222978.1| putative [Helicobacter pylori J99] 26 0.88
ref|NP_222774.1| putative [Helicobacter pylori J99] 26 1.1
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 25 1.5
ref|NP_223731.1| putative [Helicobacter pylori J99] 25 1.5
ref|NP_223644.1| putative [Helicobacter pylori J99] 25 1.5
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 25 1.5
ref|NP_223787.1| putative [Helicobacter pylori J99] 25 2.0
ref|NP_222858.1| putative [Helicobacter pylori J99] 25 2.0
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 25 2.6
ref|NP_223994.1| putative [Helicobacter pylori J99] 25 2.6
ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter... 25 2.6
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 24 3.3
ref|NP_223368.1| putative [Helicobacter pylori J99] 24 3.3
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 24 3.3
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 24 3.3
ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobac... 24 3.3
ref|NP_223180.1| putative [Helicobacter pylori J99] 24 4.4
ref|NP_223617.1| putative [Helicobacter pylori J99] 23 5.7
ref|NP_223436.1| putative [Helicobacter pylori J99] 23 5.7
ref|NP_223149.1| putative [Helicobacter pylori J99] 23 5.7
ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99] 23 5.7
ref|NP_223780.1| putative ATP synthase F1, subunit delta [H... 23 7.5
ref|NP_223773.1| putative [Helicobacter pylori J99] 23 7.5
ref|NP_223762.1| putative [Helicobacter pylori J99] 23 7.5
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 7.5
ref|NP_223588.1| putative outer membrane protein [Helicobac... 23 7.5
ref|NP_223387.1| putative [Helicobacter pylori J99] 23 7.5
ref|NP_222773.1| putative [Helicobacter pylori J99] 23 7.5
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 9.7
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 23 9.7
ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pyl... 23 9.7
ref|NP_223623.1| putative [Helicobacter pylori J99] 23 9.7
ref|NP_222968.1| putative [Helicobacter pylori J99] 23 9.7
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 31.2 bits (69), Expect = 0.027
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 24/167 (14%)
Query: 90 NNYIKLTSCLHMKKDTKDIQIQDISKIFDSVFGAERKKKKIEEYNSKLYFETIYNIAEKI 149
NN+ KLT D K++ +I + D+ K+ I Y SKLY ++ K
Sbjct: 208 NNHKKLTDFKRYSTDMKELLGIEIDEELDT-------KRLIPTY-SKLYSLKKHSKKFKR 259
Query: 150 YNDKDRNRI--ELQNKIIFSIVIRLKSEEWMLNK-LNQEFESTNNQTRELYDATKKELSD 206
K R+ QNK +L + K LNQ F+ +++Q + Y ELS
Sbjct: 260 LQRKQSRRVLKSKQNKT------KLGGNFYKTQKKLNQVFDKSSHQKTDRYHKITSELSK 313
Query: 207 DEKRIIQKVLMITP-------ENIHINSFMFEPILDTSLDHLYTCLE 246
+ I+ + L + +N+ S + + IL+TS + + L+
Sbjct: 314 QFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLD 360
>ref|NP_224180.1| putative [Helicobacter pylori J99]
Length = 176
Score = 30.4 bits (67), Expect = 0.047
Identities = 29/104 (27%), Positives = 51/104 (48%), Gaps = 16/104 (15%)
Query: 61 DSEDDKDFFTLIPFVRNLIEYTSFQADKNNNYIKLTSCLHMKKDTKDI----QIQDISKI 116
+ E DK F T++ V+NL K++N I S + ++ + I + +DI +
Sbjct: 9 EGESDKIFLTILNEVKNL-------GLKDSNIINCGSKDKLSEEAESIKGNLKAKDIYIV 61
Query: 117 FDSVFGAERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIEL 160
FDS + K+ KI+E +L T E ND++ N+I++
Sbjct: 62 FDS--DNQTKETKIQEIKKQLQENT---KQEHRLNDEEFNQIKI 100
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 26.9 bits (58), Expect = 0.52
Identities = 23/78 (29%), Positives = 40/78 (50%), Gaps = 6/78 (7%)
Query: 127 KKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIF-SIVIRLKSEEWMLNKLNQE 185
+ K YN +L + I N+ EKI D + IE + ++F + + +++EE K Q+
Sbjct: 283 ENKARLYNEELKEKLIENLDEKILFDLPKTIIEQEMDLLFRNALYSMQAEE---VKSLQD 339
Query: 186 FESTNNQTRELY--DATK 201
+ + RE + DATK
Sbjct: 340 SQEKAKEKRESFRNDATK 357
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 26.2 bits (56), Expect = 0.88
Identities = 22/124 (17%), Positives = 54/124 (42%), Gaps = 7/124 (5%)
Query: 88 KNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSVFGAERKKKKIEEYNSKLYFETIYNIAE 147
+ N +++ L + + D + + + ++ ER K++ E S+L E + E
Sbjct: 103 RKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNE 162
Query: 148 KIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTNNQ---TRELYDATKKEL 204
K+ ++++ L K ++ K +E L L E ++ + + + + +EL
Sbjct: 163 KLELEREKIEKALHEK----NELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQEL 218
Query: 205 SDDE 208
+ +E
Sbjct: 219 AIEE 222
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 26.2 bits (56), Expect = 0.88
Identities = 20/70 (28%), Positives = 33/70 (46%), Gaps = 2/70 (2%)
Query: 117 FDSVFGAERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEE 176
FD F + K + + + L +T+Y+ + D + + IEL + SI + L E
Sbjct: 120 FDLEFLNSQIKPERDFQFNYLGIKTLYD--RYLLKDANNHPIELPQHMFMSIAMFLAQNE 177
Query: 177 WMLNKLNQEF 186
LNK+ EF
Sbjct: 178 QELNKIALEF 187
>ref|NP_222978.1| putative [Helicobacter pylori J99]
Length = 177
Score = 26.2 bits (56), Expect = 0.88
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 191 NQTRELYDATKKELS--DDEKRIIQKVLMITPENIHINS 227
++T +L KK L+ DD + ++Q +L I P+ I INS
Sbjct: 72 DETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDLITINS 110
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 25.8 bits (55), Expect = 1.1
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 125 RKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWML-NKLN 183
++ K + N KL + E+ +++R R++ + + L+ E L +KL
Sbjct: 160 KENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLK 219
Query: 184 Q------EFESTNNQTRELYDATKKELSDDEKRI 211
Q E+TNNQ R+ + + +L+ +++I
Sbjct: 220 QLESAQKSLENTNNQLRQALENSNVQLAQAKEKI 253
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 25.4 bits (54), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 140 ETIYNIAEKIYNDKDRNRIELQNKI 164
E + N+A+KI DK I +QN+I
Sbjct: 194 ELVLNVAQKIAKDKHAQLIVVQNEI 218
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 25.4 bits (54), Expect = 1.5
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 12/138 (8%)
Query: 94 KLTSCLHMKKDTKDIQIQDISKIFDSVFGAERKKKKIEEYNSKL------YFETIYNIAE 147
+L S M KD K++ ISK + E+ + E + S+L + + + N A
Sbjct: 63 RLKSLKGMDKDAKELV--GISKSY--AHNNEKDRSDFERFKSRLDKAIDSFNQNLDNGAA 118
Query: 148 --KIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTNNQTRELYDATKKELS 205
K+ +D D + + K S+ +S + L++ ++ TN+ +E K L+
Sbjct: 119 SLKLPSDIDIDDTKALEKFSKSLESEKESIQNSLHQWKKQLAETNHLNKEYNTLDKTRLN 178
Query: 206 DDEKRIIQKVLMITPENI 223
+ + + ITP +
Sbjct: 179 AQKFQDVHDTSKITPSRL 196
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 25.4 bits (54), Expect = 1.5
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 124 ERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEW--MLNK 181
E KK +E N + Y+ + IY + +R + ++ I+ + S E+ + NK
Sbjct: 188 ETHKKALENGNEIV---KEYDHLKDIYQEVERTK---DGGLVREIIPSISSAEYFKLYNK 241
Query: 182 LNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPE 221
L FES NN+ +L +E+ E + ++V ++ E
Sbjct: 242 L--PFESINNENTKLNTNDNEEVKKLEFELAKEVHILILE 279
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE
[Helicobacter pylori J99]
Length = 469
Score = 25.4 bits (54), Expect = 1.5
Identities = 14/38 (36%), Positives = 23/38 (59%), Gaps = 1/38 (2%)
Query: 2 QECRQFKLLVMTHNFDFYRTLESRLSIPRKQIKMIRKN 39
QE ++FK V NF Y LE+ L+IP+K + +++
Sbjct: 41 QEVKKFKE-VSLKNFKSYLELEAVLTIPKKHYQFSKQS 77
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 25.0 bits (53), Expect = 2.0
Identities = 20/84 (23%), Positives = 43/84 (50%), Gaps = 10/84 (11%)
Query: 8 KLLVMTHNFDFYRTLESRLSIPRKQIK----MIRK-NDAREIIFEKGGYLKSFIKWI--- 59
+++++THN FY+ + + R Q K +I+K N+ +I K +K+ + +
Sbjct: 595 QIIILTHNTYFYKEITLEYDLKRYQGKYSFWIIKKDNNVSKIKGYKENPIKNSYELLWQE 654
Query: 60 --RDSEDDKDFFTLIPFVRNLIEY 81
+ E++ + +L +R +IEY
Sbjct: 655 VKQAKENNASWVSLQNIMRRIIEY 678
>ref|NP_222858.1| putative [Helicobacter pylori J99]
Length = 197
Score = 25.0 bits (53), Expect = 2.0
Identities = 32/115 (27%), Positives = 50/115 (42%), Gaps = 13/115 (11%)
Query: 114 SKIFDSVFG--AERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIR 171
S +F++ G E+ IE + +LY +T A + D ++N I L NK R
Sbjct: 21 SYVFNNSKGRLTEKSVAFIEGVSKELYLKTGVRFAIDM-TDFEKNPIALANK-----KER 74
Query: 172 LKSEEWMLNKLNQEFEST----NNQTRELYDATKKELSDDEKRIIQKVLMITPEN 222
+E L +L F + Q EL A K+L D +K +K+ + P N
Sbjct: 75 QSYQEGFLKQLKPPFVVFFFYHDAQKIELV-ANPKDLLDTDKIFFEKIAPLLPTN 128
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 24.6 bits (52), Expect = 2.6
Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 87 DKNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSVFGAERKKKKIEEYNSKLYFETIYNIA 146
DK + ++ T+ + K D + +I + D GA++ + K K +E +
Sbjct: 797 DKISYQMRETTIKNRKNDAFYDEKGEIREFLDGSLGADKYEIKNSSAQEKCLYENFMQVD 856
Query: 147 EKIYNDKDRNRIELQNK---IIFSIVIRLKSEEWMLNKLNQEFEST--NNQTRELYDA-- 199
+I +++ IE N I+F + R+K + + +F NN + L
Sbjct: 857 SEI----EKDTIEESNDTKIIVFGKLPRVKIPIGLNQTYSPDFGYVVENNDKKVLLVVET 912
Query: 200 ----TKKELSDDEKRII 212
K EL +EKR I
Sbjct: 913 KGVDKKSELRPEEKRKI 929
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 24.6 bits (52), Expect = 2.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 122 GAERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKII 165
G +K E+ + K +YN ++I D+ R L+ KII
Sbjct: 67 GLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKII 110
>ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter pylori J99]
Length = 608
Score = 24.6 bits (52), Expect = 2.6
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 37 RKNDAREIIFEKGGYLKSFIKWIRDSEDDKDFFTLIPF 74
RK AR I+F+ F++ ++ E ++DF ++PF
Sbjct: 441 RKVKARAIVFKTQS---EFLERFKNKELERDFVAVLPF 475
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 24.3 bits (51), Expect = 3.3
Identities = 24/105 (22%), Positives = 41/105 (38%), Gaps = 13/105 (12%)
Query: 133 YNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTNNQ 192
Y + ++F +I EK K + +K +FS I + E + +N ES NN
Sbjct: 26 YQNFIFFVNSASILEKT---KLNFTDSVSSKYLFSENININDENTEIKSINNLNESHNNA 82
Query: 193 TR----------ELYDATKKELSDDEKRIIQKVLMITPENIHINS 227
L+ K+ E QK++ + E H+N+
Sbjct: 83 INIYFSTIQGLFSLFTRAKENAITLEDLKDQKLVFLADEAHHLNT 127
>ref|NP_223368.1| putative [Helicobacter pylori J99]
Length = 406
Score = 24.3 bits (51), Expect = 3.3
Identities = 11/38 (28%), Positives = 20/38 (51%)
Query: 103 KDTKDIQIQDISKIFDSVFGAERKKKKIEEYNSKLYFE 140
KD D Q+ + +F+ +FG + KK+ +L F+
Sbjct: 172 KDKIDKQLHNNDHLFEGLFGEKEDLKKLVSMFGQLRFQ 209
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 24.3 bits (51), Expect = 3.3
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 124 ERKKKKIEEYNSKLYFETIYNIAEK-IYNDKDRNRI---------------ELQNKIIFS 167
E I + N++ FET+ I + N ++ N+ E ++ +
Sbjct: 158 EATSTSISDANTQRVFETLNKIKTNLVVNYRNENKFKDHENHWEAFTPQTAEEFTNLMLN 217
Query: 168 IVIRLKSEEWMLNKLNQEFESTNNQT 193
++ L S+ W LN FE TN+ T
Sbjct: 218 MIAVLDSQSWGDAILNAPFEFTNSPT 243
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 24.3 bits (51), Expect = 3.3
Identities = 33/124 (26%), Positives = 54/124 (42%), Gaps = 16/124 (12%)
Query: 127 KKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNKLN-QE 185
K KI +++ K+ +T + EKI EL+ +++ K+ L K N Q
Sbjct: 118 KSKIRDFD-KIPIQTFKPLQEKIKEAYPILYEELE-------ILQSKNVSASLFKANAQV 169
Query: 186 FESTNNQTRELYDATKKELSDDEKRIIQKVL--MITPENIHINSFMFEPILDTSLDHLYT 243
F + N + +K+L EK I K L ++ + N +++ ILD LDH
Sbjct: 170 FSALFNHL-----SYEKKLQIFEKHIPIKELNRLLDEDYPAFNRLIYQVILDPKLDHFKD 224
Query: 244 CLEK 247
L K
Sbjct: 225 ALAK 228
>ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobacter pylori J99]
Length = 144
Score = 24.3 bits (51), Expect = 3.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 167 SIVIRLKSEEWMLNKLNQEFESTNNQTRELYDATKKELSDDEKRIIQ 213
+IV+ +K + N +F + + T E+Y+ D +RI+Q
Sbjct: 14 AIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIVQ 60
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 23.9 bits (50), Expect = 4.4
Identities = 28/137 (20%), Positives = 62/137 (44%), Gaps = 23/137 (16%)
Query: 83 SFQADKNNNYIKLTSCLHMKKDTKDIQIQDISKIFDSVFGAERKKKKIEEYNSKLYFETI 142
SFQ ++ S L + K+ KD++ +I E++ + ++ K++ I
Sbjct: 495 SFQEKRDMEKGFKQSSLKLNKNLKDLEPFGEKEI-------EKRASDLVDWALKIWTYPI 547
Query: 143 YNIAEKI--YNDKDRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTNNQ----TREL 196
AE + Y K + + + K + EE+ L K + ++ ++ + +REL
Sbjct: 548 LE-AETLEEYKPKKEKKEKKEKK---------EKEEYKLKKEKKVYDLSSYKFSPHSREL 597
Query: 197 YDATKKELSDDEKRIIQ 213
+D +KE+ ++R+ +
Sbjct: 598 FDILRKEIKTLDERVTE 614
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 23.5 bits (49), Expect = 5.7
Identities = 16/68 (23%), Positives = 32/68 (46%), Gaps = 4/68 (5%)
Query: 143 YNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSE-EWMLNKLNQEFESTNNQTRELYDATK 201
Y +++ +N + L + + FS+ +++ W + NQ+ E +N R L D+
Sbjct: 363 YPNQREVFEKAKQNGVILTSGVCFSMHKDFENQASW---ERNQKTEEYHNALRNLRDSYP 419
Query: 202 KELSDDEK 209
S D+K
Sbjct: 420 DAFSSDDK 427
>ref|NP_223436.1| putative [Helicobacter pylori J99]
Length = 429
Score = 23.5 bits (49), Expect = 5.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 209 KRIIQKVLMITPENIHINSFMFEPI 233
KR++ L++ N+H S++F P+
Sbjct: 11 KRLLLFFLIVCMINLHAKSYLFSPL 35
>ref|NP_223149.1| putative [Helicobacter pylori J99]
Length = 282
Score = 23.5 bits (49), Expect = 5.7
Identities = 17/67 (25%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Query: 183 NQEFESTNNQTRELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFEPILDTSLDHLY 242
N+E ++ +EL+ + D+ + + P+ I IN F E + SL+HL
Sbjct: 115 NKEIKNVYQNRQELFSQIYGHVFDNPP---YPMSLKNPKKILINPFTRENDRNISLEHLK 171
Query: 243 TCLEKVK 249
L+ +K
Sbjct: 172 IVLKLLK 178
>ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99]
Length = 378
Score = 23.5 bits (49), Expect = 5.7
Identities = 32/134 (23%), Positives = 60/134 (43%), Gaps = 19/134 (14%)
Query: 63 EDDKDFFTLIPFVRNLIEYTSFQADKNNNYIKLTSCLHMKKDTKDIQIQDISKIF-DSVF 121
ED + F + P +R+ + + NN I + + LH K++ +++F +S F
Sbjct: 225 EDYEPRFKIAPPLRDKEGQNALKEALKNNEIAMLTSLHASKNSN-------AQLFEESAF 277
Query: 122 GAERKKKKIEEYNSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNK 181
G E IE+ S Y + + +K+ + + ++ N+ F ++L + E N+
Sbjct: 278 GCE----SIEDAFSVAY---TFLVQKKVISFQQLIKVMTINQAKF---LKLNAGEVKENQ 327
Query: 182 L-NQEFESTNNQTR 194
L N N QTR
Sbjct: 328 LANLMIVDLNAQTR 341
>ref|NP_223780.1| putative ATP synthase F1, subunit delta [Helicobacter pylori J99]
Length = 180
Score = 23.1 bits (48), Expect = 7.5
Identities = 11/30 (36%), Positives = 18/30 (59%), Gaps = 4/30 (13%)
Query: 15 NFDFYRTLESRLSIPRKQIKMIRKNDAREI 44
+FD RTLE+ L +P+K + N+ E+
Sbjct: 101 SFDSKRTLEATLLVPQK----LENNELEEV 126
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 23.1 bits (48), Expect = 7.5
Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 101 MKKDTKDIQIQDISKIFDSVFGAERKKKKIEEYNSKLYFETIYNIAEKI----YNDKDRN 156
+ + K+ +I+ +++ + + K+ E + + F ++ + EK D+ +N
Sbjct: 56 LPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKN 115
Query: 157 RIELQNKIIFSIVIR--------LKSEEWMLNKLNQEFESTNNQTREL 196
E Q ++ ++ LK + LN+ Q+ ES N+T +L
Sbjct: 116 EQEEQRRLREQQRLKQNQENQEMLKGLQQNLNQFTQKLESVKNKTLDL 163
>ref|NP_223762.1| putative [Helicobacter pylori J99]
Length = 256
Score = 23.1 bits (48), Expect = 7.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 111 QDISKIFDSVFGAERKKKKIEEYNSK 136
+ +S+ + G E+ KKK EEY K
Sbjct: 213 EGLSESYRYGLGVEKDKKKAEEYMQK 238
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.1 bits (48), Expect = 7.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 174 SEEWMLNKLNQEFESTNNQTRELYDATKKELSDD 207
SEE KL ++ + Q +E DA KK+ + +
Sbjct: 2124 SEELTHKKLKEQNKQIAEQNKEKLDAIKKQFASN 2157
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 23.1 bits (48), Expect = 7.5
Identities = 22/97 (22%), Positives = 38/97 (38%), Gaps = 27/97 (27%)
Query: 124 ERKKKKIEEYNSKLYFETIYNIAEKI---YNDKDRNRIEL--------------QN---- 162
E I + N++ FET+ NI + Y++++ N QN
Sbjct: 163 EATSTSISDTNTQRVFETLNNIKTNLIMKYSNENPNNFNTCPYNNNGNTKNDCWQNFTPQ 222
Query: 163 ------KIIFSIVIRLKSEEWMLNKLNQEFESTNNQT 193
++ +++ L S+ W LN FE TN+ T
Sbjct: 223 TAEEFTNLMLNMIAVLDSQSWGDAILNAPFEFTNSST 259
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 23.1 bits (48), Expect = 7.5
Identities = 13/74 (17%), Positives = 40/74 (53%), Gaps = 1/74 (1%)
Query: 138 YFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTNNQTRELY 197
+F++ Y +++ + D+N ++ KI+ + R++S + + +E + N+ + Y
Sbjct: 279 FFDSDYKKSQQ-RKEVDKNLHQICEKIVQDVKSRIESYKNGALGMIEELNAGFNKLVDHY 337
Query: 198 DATKKELSDDEKRI 211
+ K++L + +++
Sbjct: 338 ERMKRQLEEAHEKL 351
>ref|NP_222773.1| putative [Helicobacter pylori J99]
Length = 120
Score = 23.1 bits (48), Expect = 7.5
Identities = 24/102 (23%), Positives = 43/102 (41%), Gaps = 12/102 (11%)
Query: 134 NSKLYFETIYNIAEKIYNDKDRNRIELQNKIIFSIVIRLKSEEWMLNKLNQEFESTNNQT 193
+SK Y E+ YN A + DK ++ E ++ + +K + +FE +
Sbjct: 28 DSKYYLESFYNQASQELGDKRSDKGEKLAELFDLLFEYIK---------DSKFERLKEPS 78
Query: 194 RELYDATKKELSDDEKRIIQKVLMITPENIHINSFMFEPILD 235
YD + K+L E+ QK+ + N M+ I+D
Sbjct: 79 --AYDYSCKKLY-PEQNTSQKMRRVVLRGYKHNDKMYHTIVD 117
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 22.7 bits (47), Expect = 9.7
Identities = 9/40 (22%), Positives = 24/40 (59%)
Query: 178 MLNKLNQEFESTNNQTRELYDATKKELSDDEKRIIQKVLM 217
+L+K NQ++ ++ +EL + K +D+++ ++L+
Sbjct: 473 VLDKFNQKYNIECDKLKELKNYLKNSYKEDKRKEYLQLLL 512
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 22.7 bits (47), Expect = 9.7
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 99 LHMKKDT-KDIQIQDISKIFD-----SVFGAERKKKKIEEYNSKLYFETIYNIAEKIYND 152
L MK D + Q Q+IS+ ++ + G E K +EE + +++ + +D
Sbjct: 1541 LVMKYDILNEEQYQNISRRYEDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSD 1600
Query: 153 KDRNRIELQNKIIFSIVIRLKSEEWML 179
+ ++ + K++ S + EWM+
Sbjct: 1601 AKKKKLIKRLKVVESFLNSGNRPEWMM 1627
>ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 442
Score = 22.7 bits (47), Expect = 9.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 200 TKKELSDDEKRI----IQKVLMITPENIHINSFMFEPILDTSLDHLYTCL 245
T K LS + R+ IQK ++ ++ SF F PI L++ T L
Sbjct: 3 TPKVLSGFKDRLPKDAIQKAQLLAKVSVVFQSFGFVPIETPHLEYAQTLL 52
>ref|NP_223623.1| putative [Helicobacter pylori J99]
Length = 431
Score = 22.7 bits (47), Expect = 9.7
Identities = 22/77 (28%), Positives = 35/77 (44%), Gaps = 3/77 (3%)
Query: 172 LKSEEWMLNKLNQEFESTNNQ--TRELYDATKKELSDDEKRIIQKVLMITPENIHINSFM 229
L E M + S NQ T+E Y T+KE ++KR+++ + I E I F
Sbjct: 329 LAQNEVMKRNIRINANSYLNQLKTKEAYIETQKEAIANKKRLME-MGRIAYEAQKIGLFQ 387
Query: 230 FEPILDTSLDHLYTCLE 246
+ ++ +D L T E
Sbjct: 388 YLIYQNSYMDALITLAE 404
>ref|NP_222968.1| putative [Helicobacter pylori J99]
Length = 69
Score = 22.7 bits (47), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 214 KVLMITPENIHINSFMFEP-----ILDTSLDHLY 242
KV MITP+N SF +P +++ L+ LY
Sbjct: 10 KVFMITPDNDEEISFKDKPKKARIVMEHELEGLY 43
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.138 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 276,582
Number of Sequences: 1491
Number of extensions: 13491
Number of successful extensions: 78
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 40
length of query: 250
length of database: 494,079
effective HSP length: 75
effective length of query: 175
effective length of database: 382,254
effective search space: 66894450
effective search space used: 66894450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)