BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646129|ref|NP_208311.1| hypothetical protein
[Helicobacter pylori 26695]
(430 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223787.1| putative [Helicobacter pylori J99] 56 2e-09
ref|NP_222912.1| putative [Helicobacter pylori J99] 45 5e-06
ref|NP_222780.1| putative [Helicobacter pylori J99] 38 6e-04
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 35 0.003
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 35 0.005
ref|NP_223405.1| putative [Helicobacter pylori J99] 35 0.005
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 35 0.005
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 33 0.011
ref|NP_222950.1| putative histidine kinase sensor protein [... 33 0.011
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 33 0.014
ref|NP_223644.1| putative [Helicobacter pylori J99] 33 0.014
ref|NP_223642.1| putative [Helicobacter pylori J99] 33 0.014
ref|NP_223629.1| putative [Helicobacter pylori J99] 33 0.014
ref|NP_222774.1| putative [Helicobacter pylori J99] 32 0.024
ref|NP_224048.1| putative [Helicobacter pylori J99] 31 0.054
ref|NP_223618.1| putative [Helicobacter pylori J99] 31 0.070
ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 30 0.092
ref|NP_224003.1| putative [Helicobacter pylori J99] 30 0.092
ref|NP_223331.1| putative [Helicobacter pylori J99] 30 0.092
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 30 0.092
ref|NP_223886.1| putative [Helicobacter pylori J99] 30 0.12
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 30 0.16
ref|NP_223200.1| cag island protein [Helicobacter pylori J99] 30 0.16
ref|NP_223990.1| putative [Helicobacter pylori J99] 29 0.20
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 29 0.27
ref|NP_223761.1| putative [Helicobacter pylori J99] 28 0.35
ref|NP_223659.1| putative [Helicobacter pylori J99] 28 0.35
ref|NP_223870.1| putative DNA poymerase III subunit delta' ... 28 0.45
ref|NP_223645.1| putative [Helicobacter pylori J99] 28 0.45
ref|NP_223860.1| putative [Helicobacter pylori J99] 27 0.77
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 27 0.77
ref|NP_223384.1| putative [Helicobacter pylori J99] 27 0.77
ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99] 27 0.77
ref|NP_223788.1| putative [Helicobacter pylori J99] 27 1.0
ref|NP_223527.1| catalase [Helicobacter pylori J99] 27 1.0
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 27 1.0
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 27 1.0
ref|NP_224000.1| putative histidine kinase sensor protein [... 27 1.3
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 26 1.7
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 26 1.7
ref|NP_223534.1| putative [Helicobacter pylori J99] 26 1.7
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 26 1.7
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 26 2.3
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 26 2.3
ref|NP_223038.1| putative [Helicobacter pylori J99] 26 2.3
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 25 2.9
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 25 2.9
ref|NP_222738.1| putative [Helicobacter pylori J99] 25 2.9
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 25 3.8
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 25 3.8
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 25 3.8
ref|NP_223971.1| putative [Helicobacter pylori J99] 25 3.8
ref|NP_223810.1| glucose-6-phosphate isomerase [Helicobacte... 25 3.8
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 25 3.8
ref|NP_222877.1| putative [Helicobacter pylori J99] 25 3.8
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 25 5.0
ref|NP_222892.1| SERINE HYDROXYMETHYLTRANSFERASE [Helicobac... 25 5.0
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 24 6.6
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 24 6.6
ref|NP_223165.1| putative [Helicobacter pylori J99] 24 6.6
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 24 6.6
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 24 6.6
ref|NP_222831.1| putative [Helicobacter pylori J99] 24 6.6
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 24 6.6
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 24 8.6
ref|NP_223726.1| DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE [Heli... 24 8.6
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 56.2 bits (134), Expect = 2e-09
Identities = 107/510 (20%), Positives = 199/510 (38%), Gaps = 99/510 (19%)
Query: 3 LKIINIENCYGIGKIQKTSLDFSKSNSYLLYAQNGVFKTSFAKSLTDLINNEMPKDNFYP 62
LK IN YG KT+ N A+NG+ + FA S NNE K Y
Sbjct: 41 LKSINF--IYGANGSGKTTTSSFLKN----LAENGI-EDKFANSKIAWYNNESLKIEVYN 93
Query: 63 N-------RKSKIEIEF--------NGEKILKENVAVFHSYDEEFSSEDSVTTFMAKSDL 107
R S+++ F N EKI + ++ +++ +E S+ K +
Sbjct: 94 KQFKEEQLRNSQVKGIFTLGKKTNENLEKIESKKESINKENEKKIKNEASLQVLTQKKEK 153
Query: 108 KQQ------YDNILLELEKEKKALL-----------KSLRDIASGFDYEEEIKTIKN--- 147
+++ + N+ + E+E K +L K L++ + + EI ++
Sbjct: 154 EEKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKFKGKILKEFENDKHNQSEIVGLEKLKE 213
Query: 148 ------EKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKHHDLIEQYFN 201
KN++ +L+ LT+ +S E H ++ + + G + + + + E +
Sbjct: 214 KIEIVFSKNQTELALLECDLTDFDSIENHSIWEQKIVGSGDVAIANLIKTLSN--EDWVA 271
Query: 202 KYQELLSQSKIFKHMNSGDFGTNHADDLKKALE---NNRFFKANHSLKIAGEEITN---- 254
+ +E + + I ++ KK LE + + ++ ++K E+ TN
Sbjct: 272 QGREYVKDNSICPFCQKETI----TEEFKKQLESYFDTSYQESTDTIKKMKEDYTNKTDE 327
Query: 255 -YQKLSDIFENEKNRI---LNNEELKESFDKIEKVINANK-------------------- 290
++L +I + E+N L+ E LK + + I AN+
Sbjct: 328 ALERLDEIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKMIDKSKEMSRNFKLDSNK 387
Query: 291 -ELKAFKDAISKDNTLLTE----FLDYDSFRKKVLFSYLKQVIQNVKSLVNLYREKKPEI 345
E+ A KD I K N +T D + +K K +I KS + Y +K +
Sbjct: 388 NEIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGL 447
Query: 346 EEIIKQASKDQKE-WESVIEIFN-----QRFLVPFKVELQNQKDILLNKDAAQFRFIFSD 399
E+ I K+ E E V ++ N ++ +V K + +L F ++
Sbjct: 448 EKGINNLEKEISENQEKVKKLENEIKELEKNMVSIKPIVNEINTLLKGYGFTNFSLACTE 507
Query: 400 DNQDMNVQKEDLQ---KHLSGGEKESVIYL 426
D + +Q+ED Q + LS GE + +L
Sbjct: 508 DEKFYRIQREDGQLVGETLSEGEVTFITFL 537
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 44.7 bits (104), Expect = 5e-06
Identities = 76/364 (20%), Positives = 149/364 (40%), Gaps = 69/364 (18%)
Query: 75 EKILKENVAVFHSYDEEFSSEDSVTTFMAKSDLKQQYDNILLELEKE---KKALLKSLRD 131
E ILK+ D+ F + D T F K+++K +I+ E++++ + + +
Sbjct: 170 EDILKK----LEELDKIFKTTD-FTKFTPKTEIK----DIIKEIDEKYPINENFKRQFNE 220
Query: 132 IASGFDYEEEIKTIKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKV-KDFVN 190
S + +EIK +S ++NH +SE+ +K D+ +++ K+++
Sbjct: 221 FESNIEKHDEIKKDFERNKESLIREIENHCKNECNSEEEPEYKINDLLKNIQQICKNYIE 280
Query: 191 KH---------HDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALENNRFFKA 241
H ++ Q++ K +LL S+I ++ S F + ++++L
Sbjct: 281 SHAVNDVSKDIKSMMCQFYLKQIDLLVNSEIVRYRYSNLF-----EPIQRSLW------- 328
Query: 242 NHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAISK 301
S+K I +NE L + + E DK E ANKE +S+
Sbjct: 329 -ESIK--------------ILDNESGIYLFPKNIGEIKDKFE----ANKEKFKQSKNVSE 369
Query: 302 DNTLLTEFLDYDSFRKKV-LFSYLKQVIQNVKSLVNLYREKK---PEIEEIIKQ----AS 353
E Y +F + + + L + ++ Y+E K ++E I + AS
Sbjct: 370 FAEYCRECNPYTAFNFHLNINNGLSHQFEKFVPIMKEYKEPKITDNDLEAISTKETGLAS 429
Query: 354 KDQKEWESVIEIFNQRFLVPFKV----ELQNQKDILLNKDAAQFRFIFSDDNQDMNVQKE 409
+ W + +FN+ P K+ E + I +KD I+ D ++ N+ K+
Sbjct: 430 QLSGHWFFQLSLFNKTNFNPNKIWIPLEFNKRSKIKFDKDLE----IYFDSHESFNISKK 485
Query: 410 DLQK 413
LQ+
Sbjct: 486 YLQE 489
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 37.7 bits (86), Expect = 6e-04
Identities = 70/304 (23%), Positives = 119/304 (39%), Gaps = 29/304 (9%)
Query: 40 KTSFAKSLTDLINNEMPKDNFYPNRKSKIEIEFNGEKILKENVAVFHSYDEEFSSEDSVT 99
K+ F + L DL N + Y + K KI L+ +A F + E S ED +
Sbjct: 202 KSVFNERLKDLRENFSA--SLYADLKDKIHHNALSNDDLERMIA-FREQEFEKSLEDWMG 258
Query: 100 TFMAKSDLKQQYDNILLELEKEKKALLKSLRDIASGF-DYEEEIKTIKNEKNKSFYEILD 158
+ + + D + + E+E + L+ L G Y E + KN K+F E L+
Sbjct: 259 AYSYDENPNDELDRMAISKEQELEKSLEDLMPSVLGVPSYNESLTLAKNRCVKNFKEALE 318
Query: 159 NHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNS 218
+I+ S + +N+ D +E + E LSQ KI +
Sbjct: 319 GFTEKIKESPND---------------SNAINEAFDNLETELERATENLSQ-KIDPVLER 362
Query: 219 GDFGTNHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKES 278
+ T A + ++ LE+ + EE++ + F++ + I+ E+L
Sbjct: 363 NENYTQKALEYREFLESRKESFIVDEKNPYPEEVSFNEWRWAEFDSVFSAIVPLEDL--- 419
Query: 279 FDKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVL-FSYLKQVIQNVKSLVNL 337
K A+ LKA + A KDN L + + + K + YL NV + L
Sbjct: 420 ----NKTACAHHALKALQ-ATLKDNDLGFDATELEQIAKGFIPRGYLWHFDANVLGNLAL 474
Query: 338 YREK 341
RE+
Sbjct: 475 VREE 478
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 35.4 bits (80), Expect = 0.003
Identities = 38/196 (19%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 117 ELEKEKKALLKSLRDIAS-GFDYEEEIKTIKNEKNKSFYEILDNHLT--EIESSEKHYSF 173
E++K + +D+A+ + +E ++ ++ N +++ T I +S + S
Sbjct: 476 EIQKMLETSSNFAKDLANDSANLKECVQNLEKASNSQHKSLMETSKTIENITTSIQGVSS 535
Query: 174 KYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHA---DDLK 230
+ + + K +K V D+ +Q LL+ + + +G+ G A D+++
Sbjct: 536 QSEAMIEQGKDIKSIVEIIRDIADQ-----TNLLALNAAIEAARAGEHGRGFAVVADEVR 590
Query: 231 KALENNRF----FKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVI 286
K E + +AN ++ + Q +SD E+ KN++ EE+ S + + V
Sbjct: 591 KLAERTQKSLSEIEANINILV--------QSISDTSESIKNQVKEVEEINASIEALRSVT 642
Query: 287 NANKELKAFKDAISKD 302
N ++ + IS++
Sbjct: 643 EGNLKIASDSLEISQE 658
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 34.7 bits (78), Expect = 0.005
Identities = 49/206 (23%), Positives = 92/206 (43%), Gaps = 29/206 (14%)
Query: 31 LLYAQNGVFKTS-FAKSLTDLINNEMPKDNFYPNRKSKIEIEFNGEKILKENVAVFHSYD 89
L+ A G KTS + L+NN + + + + F K E +A Y
Sbjct: 23 LIIASAGTGKTSTIVGRILHLLNNGIKPEEI-------LLLTFTN-KASNEMIARVAKYS 74
Query: 90 EEFSSEDSVTTF--MAKSDLKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKN 147
+ SS+ TF +A LK+ Y N+ L+ KE + LL+S+ D + +E+ K +
Sbjct: 75 K-LSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNALT-DEDKKPYTS 132
Query: 148 EKNKSFYEILDNHLTEIESS---------EKHYSFKYRDI---FDGSKKVKDFVNKHHDL 195
+ + Y + N L + + S Y+ Y +I F+ +KK D+++ ++DL
Sbjct: 133 QHLYALYSLYTNALKQEDFSAWLSSKNPEHAPYAAFYENILEEFENTKKKHDYID-YNDL 191
Query: 196 IEQYFNKYQELLSQSKIFKHMNSGDF 221
+ + + +L +S +K + +F
Sbjct: 192 LLLF---KKAMLERSSPYKEVLCDEF 214
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 34.7 bits (78), Expect = 0.005
Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 15/247 (6%)
Query: 127 KSLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKVK 186
+ + DIA ++E + +E+ L + I S E R + K ++
Sbjct: 18 QKVSDIAKDIQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKVEIERQMVALKKSLE 77
Query: 187 DFVNKHHDLI-EQYFNKYQELLSQ-SKIFKHMNSGDFGTNHADDL-KKALENNRFFKANH 243
N++ L+ E+ Y++ L K + F T D L +AL+ +N
Sbjct: 78 K--NRNESLVQEKVLTNYRKSLDHLQKQRSFLQKRVFDTLLEDFLFSQALKGQNLASSND 135
Query: 244 S-LKIAGEEI--TNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKA-FKDAI 299
L++A E + + K+S + + EK + E+K S KI VI+ K ++ K
Sbjct: 136 VILQVAFENLHQSTLSKMSQLSQEEKKLNVQALEVKSSIQKISSVIDEQKTRESTLKSLQ 195
Query: 300 SKDNTLLTEF-LDYDSFRKKVLFSYLKQVIQNVKSL---VNLYREKKPEIEEIIKQASKD 355
++ N L+ DY + +++ S L++ QN+ +L +N+ ++ + E + + S
Sbjct: 196 TEQNKLILSMQKDYAIYNQRL--SLLEKERQNLNALLKRLNIIKQNRENEERVSLKKSSQ 253
Query: 356 QKEWESV 362
E + V
Sbjct: 254 ALEVKQV 260
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 34.7 bits (78), Expect = 0.005
Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 31/261 (11%)
Query: 59 NFYPNRKSKIEIEFNGEKILKENVAVFHSYDEEFSSEDSVTTFMAKSDLKQQYDNILLEL 118
N Y N + +I E+N ++LKE + D+ D D + N L
Sbjct: 268 NLYVNDEIQIRQEYN--RLLKERNEKGNMIDKNLFFND---------DPNRTLYNYLNIA 316
Query: 119 EKEKKALLKSLRD-IASGFDYEEEIKTIKNEK----NKSFYEILDNHLTEIESSEKHYSF 173
E E K L++ + I++G +YEE +K IK++K K E ++ + ++ E+
Sbjct: 317 EIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEER--I 374
Query: 174 KYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSK-IFKHMNSGDFGTNHADDLKKA 232
K D+ K +N+ + K + + K K +N + +L+
Sbjct: 375 KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ 434
Query: 233 LENNRF----------FKANHSLKIAGEEITNY--QKLSDIFENEKNRILNNEELKESFD 280
E + + N LK +E Q+ D +N K E LK
Sbjct: 435 KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQ 494
Query: 281 KIEKVINANKELKAFKDAISK 301
++K + A+ +KA+KD +S+
Sbjct: 495 DLQKELLADMSVKAYKDCVSR 515
Score = 27.3 bits (59), Expect = 0.77
Identities = 52/263 (19%), Positives = 113/263 (42%), Gaps = 28/263 (10%)
Query: 89 DEEFSSEDSVTTFMAKSDLKQQYDNIL--LELEKEKKALLKSL-RDIASGFDYEEEIKTI 145
++E + + T AK L+ Q + L + ++E+K LK+L +D+ S +E +K
Sbjct: 519 EKEKQECEKLLTPEAKKLLENQALDCLKNAKTDEERKECLKNLPKDLQSDILAKESLKAY 578
Query: 146 KNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQE 205
K+ +++ E E + EK + + + + + ++ K+ V + D + Q + ++
Sbjct: 579 KDCASQAKTE------AEKKECEKLLTPEAKKLLE--EEAKESVKAYLDCVSQAKTEAEK 630
Query: 206 -----LLSQSKIFKHMNSGDFGTNHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSD 260
LL+ K + + D + KA + L +++ Q L D
Sbjct: 631 KECEKLLTPEAKKKLEEAKKSVRAYLDCVSKAKNEAERKECEKLLTPEAKKLLENQAL-D 689
Query: 261 IFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRK--- 317
+N K E LK+ ++K + A + ++ + D +SK ++ RK
Sbjct: 690 CLKNAKTDEERKECLKDLPKDLQKKVLAKESVRVYLDCVSKAKN--------EAERKECE 741
Query: 318 KVLFSYLKQVIQNVKSLVNLYRE 340
K+L +++++ K V Y++
Sbjct: 742 KLLTPEARKLLEEAKKSVKAYKD 764
Score = 25.8 bits (55), Expect = 2.3
Identities = 48/225 (21%), Positives = 83/225 (36%), Gaps = 44/225 (19%)
Query: 102 MAKSDLKQQYDNILLEL------EKEKKALLKSLRDIASGFDYEEEIKTIKNEKNKSFYE 155
+ KS L QQ + L+ ++E+K LK + D + +E++ K + + + +
Sbjct: 385 LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQK--ELQEYKD 442
Query: 156 ILDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKH 215
+ N TE E +E G K + IE+ + + L +K +
Sbjct: 443 CIKNAKTEAEKNE---------CLKGLSK---------EAIERLKQQALDCLKNAKTDEE 484
Query: 216 MNSGDFGTNHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNN--- 272
+ N DL+K L + KA Q+ + E ++L N
Sbjct: 485 RK--ECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQAL 542
Query: 273 ---------EELKESFDKIEKVIN----ANKELKAFKDAISKDNT 304
EE KE + K + A + LKA+KD S+ T
Sbjct: 543 DCLKNAKTDEERKECLKNLPKDLQSDILAKESLKAYKDCASQAKT 587
Score = 24.3 bits (51), Expect = 6.6
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 332 KSLVNLYREKKPEIEEIIKQASKDQKEWESVIEIFNQRFLVPFKVELQNQKDILLNKDAA 391
KSL+N ++K + +K A D++ E + I + F+ EL+ QK++ KD
Sbjct: 387 KSLLN--QQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI 444
Query: 392 QFRFIFSDDNQDM-NVQKEDLQK 413
+ ++ N+ + + KE +++
Sbjct: 445 KNAKTEAEKNECLKGLSKEAIER 467
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 33.5 bits (75), Expect = 0.011
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 43 FAKSLTDLINNEMPKDNFYPNRKSKIEIEFNGEKILKENVAVFHSYDEEFSSEDSVTTFM 102
+A+ +T+ +N N P + + + +K+ KEN H +DE+F E + F+
Sbjct: 166 YAEIMTESLNIVRDLVNTPPMIGTPVYMAEVAQKVAKENHLEIHVHDEKFLEEKKMNAFL 225
Query: 103 A--KSDLKQQYDNILLELEKEKKALLKSLRDIASGFDYE 139
A K+ L ++ + K KKA K + + G Y+
Sbjct: 226 AVNKASLAVNPPRLIHLVYKPKKA-KKKIALVGKGLTYD 263
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 381
Score = 33.5 bits (75), Expect = 0.011
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 299 ISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYREKKPEIEEIIKQASKDQKE 358
+ K L +L + S K +++N ++++L K E E++++ S ++K+
Sbjct: 1 MKKSKRLKRPYLKNSHLKHSDKASSFKGLLENENNVISLENFKPKESEDLLENFS-NKKD 59
Query: 359 WESVIEIFNQRFLVPFKVE 377
+ ++E+ NQ L +KVE
Sbjct: 60 MQELLELLNQFILQSYKVE 78
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 33.1 bits (74), Expect = 0.014
Identities = 54/227 (23%), Positives = 90/227 (38%), Gaps = 29/227 (12%)
Query: 86 HSYDEEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKKALLKSLRD---------IASGF 136
H + S++ ++ L+ +N E++K ++ LK L + I
Sbjct: 740 HEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQEGLKRLEELFLEIIYQNIKDKI 799
Query: 137 DYEEEIKTIKNEKNKSFY-------EILDNHL----TEIESSEKHYSFKYRDIFDGSKKV 185
Y+ TIKN KN +FY E LD L EI++S Y + ++
Sbjct: 800 SYQMRETTIKNRKNDAFYDEKGEIREFLDGSLGADKYEIKNSSAQEKCLYENFMQVDSEI 859
Query: 186 -KDFVNKHHDLIEQYFNKYQELLSQSKIFKHMN---SGDFGTNHADDLKKALENNRFFKA 241
KD + + +D F K L + KI +N S DFG ++ KK L
Sbjct: 860 EKDTIEESNDTKIIVFGK----LPRVKIPIGLNQTYSPDFGYVVENNDKKVLLVVETKGV 915
Query: 242 NHSLKIAGEEITNYQKLSDIFENEKNRILNNE-ELKESFDKIEKVIN 287
+ ++ EE FE K + +N E + K + D++ +IN
Sbjct: 916 DKKSELRPEEKRKISTAKKFFEALKKQGVNIEYKTKLNNDQLSALIN 962
Score = 30.8 bits (68), Expect = 0.070
Identities = 64/314 (20%), Positives = 124/314 (39%), Gaps = 39/314 (12%)
Query: 63 NRKSKIEIEFNGEKILKENVAVFHSYDEEFSSEDSVTTFMAKSDLKQQYDNILLELEKEK 122
N+ ++ E EK+ E F ++F + + F ++ +++ + I + E K
Sbjct: 608 NQNEFLKKEPELEKLKDEKYLDFEKL-KDFLKDRLIGHFRVRNKNERKTEKIKINKENFK 666
Query: 123 K-----ALLKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTEIESSEKHYSFKYRD 177
K A L IA D E I I N SF N ++I S H K +
Sbjct: 667 KFETLWAGLNHQARIAYAIDSESLIDEIVKNINSSF-----NVSSKIVSVTTH---KKVE 718
Query: 178 IFDGSKKVKDFVNKH------HDLIEQYFNKYQ-ELLSQSKIFKHMNSGDFGT---NHAD 227
+ K + F K H+ I NK + S +K+ ++++ F N +
Sbjct: 719 TMGNNAKTEIFERKSACVWSLHEFISALSNKVKLSFKSVAKVLENIDENKFNEIKKNEQE 778
Query: 228 DLKKALE-------NNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFD 280
LK+ E N K ++ ++ E T + +D F +EK I + D
Sbjct: 779 GLKRLEELFLEIIYQNIKDKISYQMR----ETTIKNRKNDAFYDEKGEIREFLDGSLGAD 834
Query: 281 KIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYRE 340
K E ++ +E +++ + D+ + + ++ + K ++F L + VK + L +
Sbjct: 835 KYEIKNSSAQEKCLYENFMQVDSEIEKDTIEESNDTKIIVFGKLPR----VKIPIGLNQT 890
Query: 341 KKPEIEEIIKQASK 354
P+ +++ K
Sbjct: 891 YSPDFGYVVENNDK 904
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 33.1 bits (74), Expect = 0.014
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 18/168 (10%)
Query: 163 EIESSEKHYSFKYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFG 222
EI+ S + Y K D ++++ D ++F K E+L+ + K +
Sbjct: 121 EIKESSRVYEANKEGFERRITKRYDLIDRNIDRNREFFIKEIEILTHTNSLKELKEQGLE 180
Query: 223 ---TNHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESF 279
T+H + KKALEN E + Y L DI++ E R + ++E
Sbjct: 181 IQLTHHNETHKKALEN------------GNEIVKEYDHLKDIYQ-EVERTKDGGLVREII 227
Query: 280 DKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQV 327
I K ++I+ +NT L + + KK+ F K+V
Sbjct: 228 PSISSAEYFKLYNKLPFESINNENTKLN--TNDNEEVKKLEFELAKEV 273
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 33.1 bits (74), Expect = 0.014
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 9/152 (5%)
Query: 119 EKEKKALLKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDN----HLTEIESSEKHYSFK 174
+K K + ++D+A D E IK NE K F + L + E + + Y
Sbjct: 27 DKSKDMMKAFMKDLAFAKDKNEVIKAQDNELVKEFMQELSSLSFKEQLEFYQTNRDYDPS 86
Query: 175 YRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALE 234
+ + S+ + F + +L +Q N +E Q + N+ D N +L+KA +
Sbjct: 87 LDNDENSSELLDAFTSSLENLEKQKINPIRE---QKRESGWQNNEDNKEN--SELEKAFK 141
Query: 235 NNRFFKANHSLKIAGEEITNYQKLSDIFENEK 266
+ F ++ + + +E + +K ++ EK
Sbjct: 142 KDLSFSQSNPIPLDKKETSKEEKEEELESKEK 173
Score = 26.2 bits (56), Expect = 1.7
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 35 QNGVFKTSFAKSLTDLINNEMPKDNFYPNRKSKIEIEFNGEKILKENVAVFHSYDEEFSS 94
+N + +F K L+ +N +P D +++ K E + EK KE + HS+ S
Sbjct: 132 ENSELEKAFKKDLSFSQSNPIPLDKKETSKEEKEEELESKEKEPKETLGFAHSFSSSRFS 191
Query: 95 ED 96
D
Sbjct: 192 LD 193
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 33.1 bits (74), Expect = 0.014
Identities = 53/216 (24%), Positives = 89/216 (40%), Gaps = 36/216 (16%)
Query: 107 LKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNE----------KNKSFYEI 156
L+Q ++ +L+ + L+ + D+ + EE K +N K +S Y
Sbjct: 176 LEQSSLSLWAKLQDKLDILILNPNDVKISLNEEEMKKYYENHRKDFKKPTSFKTRSLYFD 235
Query: 157 LDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKH----HDLIEQYFNKYQELLSQSKI 212
T+++ E++Y D K++DF + HDL Q N ++ L
Sbjct: 236 ASLEKTDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLNMQKAN--EKALRSYIA 293
Query: 213 FKHMNSGDFGTNHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNN 272
K N+ ++ T D +K NN + A EIT QKL+ + E +L
Sbjct: 294 LKKGNAQNYTT---QDFEK---NNSPYTA---------EIT--QKLTALKPLE---VLKP 333
Query: 273 EELKESFDKIEKVINANKELKAFKDAISKDNTLLTE 308
E K+ F ++ V EL+ F +A S T LT+
Sbjct: 334 EPFKDGFIVVQLVSQIKDELQNFDEAKSALKTRLTQ 369
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 32.3 bits (72), Expect = 0.024
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 20/205 (9%)
Query: 230 KKALENNRFFKANHSL--KIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEK--- 284
K EN F N SL KI+G E +N Q +++N ELK D + K
Sbjct: 66 KLTKENTELFAENESLSVKISGLEHSNDQ----LWQNNNKLTKEKAELKTEKDILAKENT 121
Query: 285 --------VINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVN 336
+ +EL K+ + ++NT LT + + K L + ++ V +L N
Sbjct: 122 RLLAARDRLTEEKRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTN 181
Query: 337 LYREKKPEIEEIIKQASKDQKEWESVIEIFNQRFLVPFKVELQNQKDILLNKDAAQFRFI 396
R+ + ++ A ++ + +E NQR K +L++ + L N + Q R
Sbjct: 182 -ERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTDKLK-QLESAQKSLENTN-NQLRQA 238
Query: 397 FSDDNQDMNVQKEDLQKHLSGGEKE 421
+ N + KE + S E+E
Sbjct: 239 LENSNVQLAQAKEKIAIEKSELERE 263
Score = 28.9 bits (63), Expect = 0.27
Identities = 29/131 (22%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 228 DLKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKI----E 283
+LK A N++ + N L I +++T ++ +++F ++ + L+ S D++
Sbjct: 45 ELKDA--NDQLRQKNDKLFITKDKLT--KENTELFAENESLSVKISGLEHSNDQLWQNNN 100
Query: 284 KVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYREKKP 343
K+ ELK KD ++K+NT L D + K+ L + +++ + L + E
Sbjct: 101 KLTKEKAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHKITELTK 160
Query: 344 EIEEIIKQASK 354
E + + + K
Sbjct: 161 ENKALTTENDK 171
>ref|NP_224048.1| putative [Helicobacter pylori J99]
Length = 187
Score = 31.2 bits (69), Expect = 0.054
Identities = 29/128 (22%), Positives = 53/128 (40%), Gaps = 18/128 (14%)
Query: 174 KYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKAL 233
K R+I KD + KH+++ E +F+ ++ L ++F +HAD KAL
Sbjct: 41 KIRNILKKHGSRKDIILKHNEIKEAFFSPFKPQLKTVQVF-------LSHSHADK-NKAL 92
Query: 234 ENNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELK 293
+ ++ K+ + +F + K+ +LN + KIE K
Sbjct: 93 GVKDYLESKTKRKVF---------IDSLFWDYKDDVLNKLAKHDDISKIEDAFTLILR-K 142
Query: 294 AFKDAISK 301
+ +D I K
Sbjct: 143 SLQDMIEK 150
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 30.8 bits (68), Expect = 0.070
Identities = 33/157 (21%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 224 NHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIE 283
+H D + +N K N++L ++I + +KL ++ + LN++ L+ S +
Sbjct: 14 DHLDLTTHLIHSN---KDNNALLEVADKI-DAEKLFSALYLKRLKFLNSQ-LQNSLKSVI 68
Query: 284 KVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNV-KSLVNLYREKK 342
+ + +KE KA ++ + D + Y+ R + Y + +V K ++ R++K
Sbjct: 69 ESFDYSKE-KALEEIKALDLGVKDIEKTYEKLRANLEEEYSSVAVNSVVKKVIEEVRDQK 127
Query: 343 PEIEEIIKQASKDQKEWESVIEIFNQRFLVPFKVELQ 379
P + +I + ++ E ES+++ Q + K+E++
Sbjct: 128 PYLASLINKPNEFNSEIESIMQ---QNLIKNAKLEIE 161
>ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 30.4 bits (67), Expect = 0.092
Identities = 30/141 (21%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 31 LLYAQNGVFKTSFAKSLTDLINNEMPK-DNFYPNRKSKIEIEFNGEKILKENVAVFHSYD 89
+++A N + D+++ E+ K D+ Y S + ++ + + ++ + +Y+
Sbjct: 23 IIFASNLNKDVCVCEYCIDVMHGELHKYDSKYDRMDSLLALKRDRLRRMESS-----AYE 77
Query: 90 EEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNEK 149
EEF ++ A +LK DN ++ E+ KK ++ + ++E++K K +
Sbjct: 78 EEFL----LSRIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLK--KQDN 131
Query: 150 NKSFYEILDNHLTEIESSEKH 170
S E+ HL E+E S+ +
Sbjct: 132 QDSDLEL--EHLEEVELSKSN 150
Score = 28.9 bits (63), Expect = 0.27
Identities = 33/134 (24%), Positives = 59/134 (43%), Gaps = 12/134 (8%)
Query: 104 KSDLKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTE 163
K D K + LL L++++ ++S YEEE + K +LDN++
Sbjct: 49 KYDSKYDRMDSLLALKRDRLRRMESSA-------YEEEFLLSRIPAPKELKAVLDNYVIG 101
Query: 164 IESSEKHYS---FKYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGD 220
E ++K +S + + +K+K N+ DL ++ + + LS+S I +G
Sbjct: 102 QEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSDLELEHLEEVE--LSKSNILLIGPTGS 159
Query: 221 FGTNHADDLKKALE 234
T A L K L+
Sbjct: 160 GKTLMAQTLAKHLD 173
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 30.4 bits (67), Expect = 0.092
Identities = 55/258 (21%), Positives = 110/258 (42%), Gaps = 27/258 (10%)
Query: 183 KKVKDFVNKHHDLIEQY------FNKYQELLSQS--KIFKHMNSGDFGTNHADDLKKALE 234
KK F + + LI+Q+ +N+ ++ Q K K + + DF D L K +
Sbjct: 152 KKNIMFFSANEHLIKQFEKEIEKYNRNKDYSKQIDFKNLKSVKNKDFYRAPKDSLMKEIA 211
Query: 235 NNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEK-----VINAN 289
+ S + + E + NY+ D ++N +N ++ +E K + + ++ +++
Sbjct: 212 LFYYRADLMSDEESKENLLNYK---DCWDNGENYVILDEAHKGNKTESKRQAIFSLLSLK 268
Query: 290 KELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYREKKP------ 343
L F ++++ L+T + S + V Y K+ + K+ +N ++E K
Sbjct: 269 GFLFNFSATFTEESDLITAVYNL-SVGEWVKLGYGKESVLLKKNNLNAFKELKDLNDREK 327
Query: 344 EIEEIIKQASKDQKEWESVIEIFNQRFLVPF--KVELQNQKDILLNKDAAQFRFIFSDDN 401
EI + ++ V F+ ++ F V ++N + K A R I +DD
Sbjct: 328 EIALLKALLLLGMQKRYKVEGYFHDPLMLVFTHSVNMENSDAEIFFKTLA--RVIENDDE 385
Query: 402 QDMNVQKEDLQKHLSGGE 419
D + K+DL + L E
Sbjct: 386 SDFSKAKDDLLEELKNPE 403
Score = 26.9 bits (58), Expect = 1.0
Identities = 60/261 (22%), Positives = 108/261 (40%), Gaps = 46/261 (17%)
Query: 137 DYEEEI--KTIKNEKNKSFYEI-LDNHLTEI-----------ESSEKHYSFKYRDIFDGS 182
DY ++I K +K+ KNK FY D+ + EI + K Y+D +D
Sbjct: 180 DYSKQIDFKNLKSVKNKDFYRAPKDSLMKEIALFYYRADLMSDEESKENLLNYKDCWDN- 238
Query: 183 KKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALENNRFFKAN 242
+++ ++++ + + IF ++ F N + E + A
Sbjct: 239 -------GENYVILDEAHKGNKTESKRQAIFSLLSLKGFLFNFSATF---TEESDLITAV 288
Query: 243 HSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKEL------KAFK 296
++L + Y K S + +KN + +ELK+ D+ EK I K L K +K
Sbjct: 289 YNLSVGEWVKLGYGKESVLL--KKNNLNAFKELKDLNDR-EKEIALLKALLLLGMQKRYK 345
Query: 297 -DAISKDNTLL--TEFLDYDSFRKKVLFSYLKQVIQN------VKSLVNLYREKKPEIEE 347
+ D +L T ++ ++ ++ F L +VI+N K+ +L E K E
Sbjct: 346 VEGYFHDPLMLVFTHSVNMENSDAEIFFKTLARVIENDDESDFSKAKDDLLEELKN--PE 403
Query: 348 IIKQASKDQKEWESVIEIFNQ 368
+ KD KE + IE+F +
Sbjct: 404 FLFSDGKD-KEKDYKIEVFKE 423
Score = 24.3 bits (51), Expect = 6.6
Identities = 48/210 (22%), Positives = 79/210 (36%), Gaps = 43/210 (20%)
Query: 123 KALLKSLRDIASGFDYEEEIKTIKNEKNKS----FYEILDNHLTEIESSEKHYSFKYRDI 178
+A+LK ++ +G + + IK EK + F T + SFK +
Sbjct: 600 EAILKFQKESENGGENRGPWREIKLEKTRIEHALFVPCYRKEQTNALKISQSASFKMSE- 658
Query: 179 FDGSKKVKDFVNKHHDLIEQYFNKYQELLSQSK--IFKHM----NSGDFGTNHADDLKKA 232
K KD H + E++F E+ + K M + T H DL
Sbjct: 659 ----KNFKDLKEHFHLMSEKHFILKHEIYDPKDYALLKEMIQTAHFKKVSTWHYKDLDYM 714
Query: 233 LENNRFFKANHSLKIAGEEITNYQKLSDIF---ENEKNRILNNEELKESFDKIEKVINAN 289
+ +I G+ N + D F +NEK I++ + +K DK EK+I
Sbjct: 715 IS-----------EIKGKLYPNQKVPKDEFNALDNEK--IVHFKRVKVKADKKEKLIQTI 761
Query: 290 KELKAFKDAISKDNTLLTEFLDYDSFRKKV 319
+E+K LD ++ RKK+
Sbjct: 762 QEVKEHAP------------LDKETLRKKI 779
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 30.4 bits (67), Expect = 0.092
Identities = 30/144 (20%), Positives = 65/144 (44%), Gaps = 25/144 (17%)
Query: 137 DYEEEIKTIKNEKNKSFYEILDNHLTEIESSEKH--YSFKYRDIFDGSKKVKDFVNKHHD 194
D+E+ I +++K+K F I D + +++S Y+F + + + V++ ++ ++
Sbjct: 764 DFEKLIPLKRDKKSKIFNAIFDLNSNGVKTSRDPWVYNFSQKTLM---QSVQNCIDTYNA 820
Query: 195 LIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALENNRFFKANHSLKIAGEEITN 254
++++ +++E FK + D G + D K L + EIT
Sbjct: 821 DLKRFNERFRE------AFKQRTAKDKGIKKSADRYKHLND--------------REITT 860
Query: 255 YQKLSDIFENEKNRILNNEELKES 278
+ + KN+++ NE L ES
Sbjct: 861 DKTKIAWTDGLKNKLIKNENLPES 884
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 30.4 bits (67), Expect = 0.092
Identities = 47/202 (23%), Positives = 81/202 (39%), Gaps = 27/202 (13%)
Query: 143 KTIKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKHHDLIEQYFNK 202
K + KN Y+ + ++E S K +D+ + NK + Q ++
Sbjct: 597 KAVAEAKNTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKM-EAKSQANSQ 655
Query: 203 YQELLSQSKIFKHMNSGDFGTNHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSDIF 262
E+ + I K N +A +LK + + L+ +++ ++ K D F
Sbjct: 656 KDEIFAL--INKEANRDARAIAYAQNLKGIKR-----ELSDKLENINKDLKDFSKSFDEF 708
Query: 263 ENEKNRILNNEE-----LKESF-------DKIEKVINANKELKAFKDAISKDNTLLTEFL 310
+N KN+ + E LK S + I KV N N L FK+ +KD + +T+
Sbjct: 709 KNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQ-- 766
Query: 311 DYDSFRKKVLFSYLKQVIQNVK 332
K L + +K VI N K
Sbjct: 767 -----AKSDLENSIKDVIINQK 783
>ref|NP_223886.1| putative [Helicobacter pylori J99]
Length = 340
Score = 30.0 bits (66), Expect = 0.12
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 29/141 (20%)
Query: 237 RFF--KANHSLKIAGEEITNYQKLSDIFENEKNRI--LNNEELKESFDKIEK--VINANK 290
RFF KA SLK +E N+ L DI + N + +NNE+L SF+ ++K V+NA
Sbjct: 147 RFFTPKAWESLKFL-QERANFLHL-DISGHLLNALFEINNEDLSVSFNDLDKLAVLNAPI 204
Query: 291 ELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYREKKPEIEEIIK 350
L+ ++ S + +K +L +LK KS++++Y + ++K
Sbjct: 205 TLEDIQELSSNAGDM--------DLQKLILGLFLK------KSVLDIY-------DYLLK 243
Query: 351 QASKDQKEWESVIEIFNQRFL 371
+ KD + F Q FL
Sbjct: 244 EGKKDADILRGLERYFYQLFL 264
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 29.6 bits (65), Expect = 0.16
Identities = 65/339 (19%), Positives = 126/339 (36%), Gaps = 54/339 (15%)
Query: 40 KTSFAKSLTDLINN--EMPKDNFYPNRKSKIEIEFNGEKILKENVAVFHSYDEEFSSEDS 97
K K+ L+NN + +D + +K K +++ K+L + + E E
Sbjct: 40 KEDALKARKKLLNNTHDFLEDLVFRKQKIKELVDYRA-KVLLDLENKYKKEKEALEKETR 98
Query: 98 VTTFMAKSDLKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNEKNKSFY--E 155
AKS + Y + LE + L K L + +E T ++++ S+Y +
Sbjct: 99 GKILTAKS---KAYGD--LEQALKDNPLYKKLLPNPYAYVLNQETFTQEDKERLSYYYPQ 153
Query: 156 ILDNHL---TEIESSEKHYSFKYRDIF----DGSKKVKDFVNKHHDLIEQYFNKYQELLS 208
+ + + T + +K + +F + +KK + IE+Y N LLS
Sbjct: 154 VKTSSIFKKTTATTKDKAQALLQMGVFSLDEEQNKKASRLALSYKQAIEEYSNNISNLLS 213
Query: 209 QSKI-----FKHMNSGDFGTNHADDLKKALENNRFFKANHSLKIAGEEIT-----NYQKL 258
+ ++ + + F + D +KA F + +A ++I Y+
Sbjct: 214 RKELDNIDYYLQLERNKFDSKAKDIAQKATNTLIFNSERLAFSMAIDKINEKYLRGYEAF 273
Query: 259 SDIFENEKNRILNNEELKE----------------------SFDKIEK--VINANKELKA 294
S++ +N K+ + N K +FD K ++ E
Sbjct: 274 SNLLKNVKDDVELNTLTKNFTNQKLSFAQKQKLCLLVLDSFNFDTQSKKSILKKTNEYNI 333
Query: 295 FKDA---ISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQN 330
F D+ +S T+ E +F K V+ +Y V +N
Sbjct: 334 FVDSDPMMSDKTTMQKEHYKIFNFFKTVVSAYRNNVAKN 372
>ref|NP_223200.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 29.6 bits (65), Expect = 0.16
Identities = 38/185 (20%), Positives = 81/185 (43%), Gaps = 23/185 (12%)
Query: 241 ANHSLKIAGEEITNYQKLSDIFEN-EKNRILNNEELKESFDKIEKVINANKELKAFKDAI 299
+N+ K+ + K + E+ ++N +LN +E K+ D+I+ + + K++ K A+
Sbjct: 2 SNNMRKLFSMIANSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGAL 61
Query: 300 SKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYREKKPEIEEIIKQASKD---- 355
D L DY + K + K+V YR + E E++ +++
Sbjct: 62 --DKVLRNYMKDYRAVIKSIGVDKFKKV----------YRLLESETMELLHAIAENPNFL 109
Query: 356 -QKEWESVIEIFNQRFLVP--FKV---ELQNQKDILLNKDAAQFRFIFSDDNQDMNVQKE 409
K S++ IF F P FK+ E+ +Q ++ K F+ +D+ + +
Sbjct: 110 FSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTKLPPLKLFVMTDEEVNFYANLK 169
Query: 410 DLQKH 414
++++
Sbjct: 170 TIEQY 174
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 29.3 bits (64), Expect = 0.20
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 171 YSFKYRDIFDG-SKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDL 229
Y FK+ + + + + + F++KH Y + ++ L I+ + S + + D L
Sbjct: 851 YQFKHPNYTENFTPEFRSFIDKH------YSHHFEPLEVLGYIYALLYSPHYRKRYEDFL 904
Query: 230 K----KAL--ENNRFFKANHSL--KIAGEEITNYQKLSDIFENEKNRILNNEELKESFDK 281
K K L N F+A L ++ G + N + L+ FE K+ + KE+ D+
Sbjct: 905 KADYPKILFTNNKDLFRALSLLGIELIGLHVLNRESLNHSFEKLKDPTIGESYYKEAHDR 964
Query: 282 ---IEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLK 325
I+K + E + + + + + E DY VL YLK
Sbjct: 965 NPIIKKPSHKKLEQRLYINHSAYFRGVSEEIHDYMIGGYGVLDKYLK 1011
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 28.9 bits (63), Expect = 0.27
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 3/56 (5%)
Query: 226 ADDLKKALENNRFFKANHSLKIAGEEITN---YQKLSDIFENEKNRILNNEELKES 278
A L A +N F A + + A + + N +KLSD +EN N + N L ++
Sbjct: 11 ASSLLNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSNLLTNFNNLNQA 66
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 28.5 bits (62), Expect = 0.35
Identities = 53/227 (23%), Positives = 89/227 (38%), Gaps = 26/227 (11%)
Query: 182 SKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALENNRFFKA 241
S K F N +IE+ N ++ + K S + TN + +K+ L N + +
Sbjct: 40 SAKNSKFTNNTLKIIEELNNGVKQASEEIKEKAFDFSNEKLTN--EQIKELLNNAKIPTS 97
Query: 242 NHSLKIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAISK 301
G N + + + +N K I IEK +NKEL+ KDA K
Sbjct: 98 GRDAITFGTNNLNPEMVEFLHKNNKKMI------------IEKA--SNKELELLKDANFK 143
Query: 302 DNTLLTEFLDYDSFRKKVLFSYLKQV-IQNVKSLVNL-----YREKKPEIEEIIKQASKD 355
+ LD+D+ + + V ++N +S + YR + I++ +
Sbjct: 144 HPENIRASLDHDAIAHILKRHGVNSVNVKNGESPITYEDIANYRYIVNNADAILRTLDNE 203
Query: 356 QKEWESVIEIFNQRFLVPFKVELQ-NQKDILLNKDAAQFRFIFSDDN 401
KE VI F Q VE N+K+ L+ K + + D+N
Sbjct: 204 DKE---VISAFKQINGYAVVVEQAINKKNELVLKTMYKSNGDYKDNN 247
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 28.5 bits (62), Expect = 0.35
Identities = 57/241 (23%), Positives = 105/241 (42%), Gaps = 40/241 (16%)
Query: 145 IKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDG--------------SKKVKDFVN 190
+KN YE+L + E++ + H +FK I +G KK + +N
Sbjct: 334 LKNMSKHELYELLGFYQKELDKKQNHSAFKNFAILNGLDRDFERETKGYSVLKKKEMLLN 393
Query: 191 KHHDLIEQYFNKYQELL---SQSKIFKHMNSGDFGTNHADDLKKALENNRFFKAN-HSLK 246
K L ++ +K LL ++++ N+ + L KALE ++ + + K
Sbjct: 394 KLKHLDKRLLDKNSHLLLAQLRNEVKTKQNTQYNTLTNPILLAKALELSKDKRPTLKTFK 453
Query: 247 IAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDA---ISKDN 303
A YQ + + F+ ++ N+ K + + E V +K+L+ +++ ++K+
Sbjct: 454 NAYFSARKYQFMLESFKTKQ----NDPTYKLNDNTYELV---SKQLQDYQNTMLLLAKER 506
Query: 304 TLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYRE------KKPEIEEIIKQASKDQK 357
L FL+ D +K+ F K+ VKS + YRE +K + IKQ SK K
Sbjct: 507 LL---FLEQDLKQKEEEFERAKE--HYVKSSKH-YRETSLSPKEKQGFLKQIKQFSKISK 560
Query: 358 E 358
+
Sbjct: 561 D 561
>ref|NP_223870.1| putative DNA poymerase III subunit delta' [Helicobacter pylori J99]
Length = 218
Score = 28.1 bits (61), Expect = 0.45
Identities = 21/68 (30%), Positives = 33/68 (47%), Gaps = 6/68 (8%)
Query: 145 IKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKV-----KDFVNKH-HDLIEQ 198
+KN + + L+ L E S KH+ Y +I + KKV KDF +H ++I +
Sbjct: 1 MKNSNRLIYTDNLEESLEEAASLFKHHIKFYTEIIEKDKKVIKTFNKDFKIEHAKEVISK 60
Query: 199 YFNKYQEL 206
K+ EL
Sbjct: 61 AHLKHSEL 68
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 28.1 bits (61), Expect = 0.45
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 20/82 (24%)
Query: 262 FENEKNRILNNEEL-------------KESFDKIEKVINANK----ELK-AFKDAISKDN 303
FE+ N++LNN++L KE F E+ N + ELK AFKD I KD
Sbjct: 1244 FESLLNKVLNNKDLSVKYAQVDPNDPKKEIFITDEEQSNLARQKAEELKEAFKDWIYKDY 1303
Query: 304 TLLT--EFLDYDSFRKKVLFSY 323
+ T E + D+F VL +Y
Sbjct: 1304 SRRTHLEQIYNDTFNNSVLKTY 1325
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 27.3 bits (59), Expect = 0.77
Identities = 29/117 (24%), Positives = 55/117 (46%), Gaps = 19/117 (16%)
Query: 64 RKSKIEIEFNGEKILKENVAVFHSYDEEFSSEDSVTTFMAKSDLK---QQYDNILLELEK 120
++ K E++F K+LK+ + DE + D+ F A DL+ ++ + +L LE
Sbjct: 63 KRPKSEVDFL-MKMLKKYLK-----DERSTYLDNNIRFRAIGDLEGFSKELRDTILRLEN 116
Query: 121 EKKALLKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDN---HLTEIESSEKHYSFK 174
+ + + +A + KNE +++F +L+N H+ IES E S +
Sbjct: 117 DTRYFKDFTQVLALNYGS-------KNELSRAFKSLLENPPNHINNIESLENEISHR 166
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 27.3 bits (59), Expect = 0.77
Identities = 41/198 (20%), Positives = 77/198 (38%), Gaps = 25/198 (12%)
Query: 132 IASGFDYEEEIKTIKNEKNKSFYEI----------LDNH--LTEIESSEKHYSFKYRDIF 179
++ +YE++I IKN KN ++ ++NH LT+ K YS +++
Sbjct: 172 VSFSVEYEQDITPIKNPKNGVGLDLNILDIACSCGVNNHKKLTDF----KRYSTDMKELL 227
Query: 180 DGSKKVKDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALENNRFF 239
G + ++ K LI Y +K L SK FK + K F+
Sbjct: 228 -GIEIDEELDTKR--LIPTY-SKLYSLKKHSKKFKRLQRKQSRRVLKSKQNKTKLGGNFY 283
Query: 240 KANHSL-----KIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKA 294
K L K + ++ Y K++ + I+ + ++ K K+ N ++
Sbjct: 284 KTQKKLNQVFDKSSHQKTDRYHKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGL 343
Query: 295 FKDAISKDNTLLTEFLDY 312
+ ++ + FLDY
Sbjct: 344 NQSILNTSFYQIISFLDY 361
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 27.3 bits (59), Expect = 0.77
Identities = 70/344 (20%), Positives = 139/344 (40%), Gaps = 44/344 (12%)
Query: 104 KSDLKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNEKN----------KSF 153
+ D+ QQ+ ++L E + ++S + D EEI NEKN F
Sbjct: 13 QKDVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHDSLEEIYKATNEKNFLQLFLTDYANLF 72
Query: 154 YEILDNHLTEIESSEKHYSFKYRDIFDGSKKVKDF--VNKHHDLIEQYFNKYQ-ELLSQS 210
+ EI+ S +K +++ +V+DF ++ +L+ + F+ + + L+ S
Sbjct: 73 AAKVIKVSKEIDESLIPSYYKEKNL-----EVEDFFIISDLRELVREDFSLLRDQFLANS 127
Query: 211 KIFKHMNSGDFGTNHADDLKKALENNR-FFKANHSLKIAGEEITNYQKLSDIFENEKNRI 269
+ +G N+ L L+ R +F + ++ + Y + + F R
Sbjct: 128 IAPNNHTYAIYGNNYVYPLPVRLKEERSYFLGDEKHYLSVYKSNEYLTMQENF----MRF 183
Query: 270 LNNEELKESF--DKIEKVINANKELKAFKDAISKDNTLL----TEFLDYD--SFRKKVLF 321
+ + L D I +I+A EL ++ + D T + T+ L+Y+ +F K+VL
Sbjct: 184 VFGKRLFYLLYPDSINNIIHAELELLQSENDLLNDFTSIIVKYTKTLEYEIYTFAKQVLL 243
Query: 322 SY---------LKQVIQNVKSLVNLYREKKPEIEEIIKQASKDQKEWESVIEIFNQRFLV 372
L +Q + + KKP + IK K +K + + E +
Sbjct: 244 KACEKDPNLYDLAYKVQGKSFTLKDFFAKKPNLGS-IKLLLKHEKVQDHLEENLKRFINY 302
Query: 373 PFKVEL---QNQKDILLNKDAAQFRFIFSDDNQDMNVQKEDLQK 413
PF+ L QN ++ +++ A + N+ + ++ L K
Sbjct: 303 PFQKSLSLIQNIRNKAVHQKAPSLNEVEKLRNEILGIEGASLLK 346
>ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 218
Score = 27.3 bits (59), Expect = 0.77
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 25/157 (15%)
Query: 123 KALLKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGS 182
+A+LKSL ++ + F E + + N K ++ E + L E Y+ K + + D S
Sbjct: 46 EAVLKSLENLKNAFILENDDEI--NLKKIAYIEF--SKLAECVRPSGFYNQKAKRLIDLS 101
Query: 183 KKV-KDFVNKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDL------KKALEN 235
K + KDF Q F +++ +++ + ++ G AD + K+ +
Sbjct: 102 KNILKDF---------QSFENFKQEVTKEWL---LDQKGIGKESADAILCYVCAKEVMVV 149
Query: 236 NRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNN 272
+++ + LK G EI +Y +L FE LN+
Sbjct: 150 DKY--SYLFLKKLGIEIEDYDELQHFFEKGVQENLNS 184
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 26.9 bits (58), Expect = 1.0
Identities = 64/283 (22%), Positives = 111/283 (38%), Gaps = 77/283 (27%)
Query: 75 EKILKENVAVFHSYDEEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKKALLKSLRDIAS 134
++I EN + F + + F E ++ + QY + LE++++AL + ++ +
Sbjct: 26 KQIESENQSRFLAQQKAFEKE--------VNEKRAQYQSYFKNLEQKEEALKERAKEQQA 77
Query: 135 GFDYEEEIK-----TIKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFV 189
FD E +K +++E+ K E N E +K +++ + SK+V++
Sbjct: 78 QFD--EAVKQASALALQDERAKIIEEARKNAFLE---QQKGLELLQKELDEKSKQVQELH 132
Query: 190 NKHHDLIEQYFNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALENNRFFKANHSLKIAG 249
K ++ + LK+ ENN +A LK
Sbjct: 133 QKEAEI-------------------------------ERLKR--ENN---EAESRLKA-- 154
Query: 250 EEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAISKDNTLLTEF 309
ENEK NE+L+ +KIEK ++ ELK FK + L E
Sbjct: 155 -------------ENEKKL---NEKLELEREKIEKALHEKNELK-FKQQEEQLEMLRNEL 197
Query: 310 LDYDSFRKKVLFSYLKQVIQNVKSLVNLYREKKP--EIEEIIK 350
++ RK L S Q ++ R+K P +EEI K
Sbjct: 198 --KNAQRKAELSSQQFQGEVQELAIEEFLRQKFPLDSVEEIKK 238
Score = 25.4 bits (54), Expect = 2.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 322 SYLKQVIQNVKSLVNLYREKKPEIEEIIKQAS 353
SY K + Q ++L +E++ + +E +KQAS
Sbjct: 56 SYFKNLEQKEEALKERAKEQQAQFDEAVKQAS 87
>ref|NP_223527.1| catalase [Helicobacter pylori J99]
Length = 505
Score = 26.9 bits (58), Expect = 1.0
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 361 SVIEIFNQRFLVPFKVELQNQKDILLNKDAAQFRFIFSDDNQDMNVQKEDLQKHLSGGE 419
S+I +RF V F E L N++AA+ R D NQ DL ++GG+
Sbjct: 202 SLINAKGERFWVKFHFETMQGVKHLTNEEAAEVRKYDPDSNQ------RDLFDAIAGGD 254
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 26.9 bits (58), Expect = 1.0
Identities = 32/137 (23%), Positives = 62/137 (44%), Gaps = 23/137 (16%)
Query: 261 IFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAISKDNTLLTEFLD--YDSFRK- 317
IF N+ R N ++ +ESF I + ++L D +++ F D ++ F++
Sbjct: 244 IFSNDFMRAYNEKQKRESFYDISFYLTIEQDL---LDTLNEPVMNKKHFADNNFEEFQRI 300
Query: 318 -KVLFSYLKQVIQNVKSLVNLYREKKPEIEEIIKQASKDQKEWESVIEIFNQRFLV---- 372
+ K I+ ++ L++ Y + +K+ +KD + E +N FLV
Sbjct: 301 IRAKLENFKDRIELIEELLSKYHPTR------LKEYTKDGIIYSKQCEFYN--FLVGMNE 352
Query: 373 -PFKVELQNQKDILLNK 388
PF + N+KD+ L +
Sbjct: 353 APF---ICNRKDLYLKE 366
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 26.9 bits (58), Expect = 1.0
Identities = 30/131 (22%), Positives = 50/131 (37%), Gaps = 10/131 (7%)
Query: 157 LDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQ-ELLSQSKIFKH 215
L N++ EI + D + KKV DF+ + F KYQ + + IF
Sbjct: 238 LKNNVKEIAKLHEKIPISAEDANEFEKKVNDFIER--------FQKYQYPIYYGNAIFLA 289
Query: 216 MNSGDFGTNHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEEL 275
T +K A E A S+ IA +K+ IF+N+ ++ + L
Sbjct: 290 DLPAKIDTPLYSPIKIAFE-KALKNAKDSVFIASSYFIPGKKIMKIFKNQISKGIELNIL 348
Query: 276 KESFDKIEKVI 286
S + ++
Sbjct: 349 TNSLSSTDAIV 359
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 344
Score = 26.6 bits (57), Expect = 1.3
Identities = 30/116 (25%), Positives = 50/116 (42%), Gaps = 20/116 (17%)
Query: 236 NRFFKANHSLKIAGEEITNYQK-----LSDIFENEKNRILNNEELKESF----------D 280
N + +H LK E+ L + +N+++R + + SF
Sbjct: 133 NEIIRIDHFLKNTTHELNTPMSALVLSLKTLEDNQQHRRIKIAIQRMSFLYRSLSYLVMQ 192
Query: 281 KIEKVINANKELKAFKDAISKDNTLLTEFLDYD--SFRKKVLFSYLKQVIQNVKSL 334
IE+ A +LKA I+K+NTL +E +DY F+ ++ LK Q+ SL
Sbjct: 193 DIERESFALLDLKAL---ITKENTLFSEMIDYHKLEFKSDLVGVVLKAKEQDFISL 245
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 26.2 bits (56), Expect = 1.7
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 297 DAISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVKSLVNLYRE----KKPEIEEIIKQA 352
D + K+ L ++ D+ K L LK I S + L E +K E+ +K+
Sbjct: 208 DFVKKETLALIAEIEKDNEEAKRLGKPLKN-IPTFGSRIELSDEVLAHQKKAFEDELKEQ 266
Query: 353 SKDQKEWESVIEIFNQRFL 371
K +K W+ ++ +RF+
Sbjct: 267 GKPEKIWDKIVPGKMERFI 285
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 26.2 bits (56), Expect = 1.7
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 199 YFNKYQELLSQSKIFKHMNSGDFGTNHAD-----DLKKALENNRFFKANHSLKIAGE 250
++ K L + F++ S +FG A DLKK LENN+ K N K GE
Sbjct: 38 HYKKQLIELEGLQAFQNKVSKEFGIKMAQKMDTSDLKKELENNK-IKLNELSKSVGE 93
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 26.2 bits (56), Expect = 1.7
Identities = 40/195 (20%), Positives = 77/195 (38%), Gaps = 12/195 (6%)
Query: 6 INIENCYGIGKIQKTSLDFSKSNSYLLYAQNGVFKTSFAKSLTDLINNEMPKDNFYPNRK 65
I +E C I K K + +K + L+ + + KTS I N KD+F
Sbjct: 9 IKVERCKDIQKELKKAAAENKLQTEDLWFE--ILKTSI------FIKNSA-KDDFSEAFG 59
Query: 66 SKIEIEFNGEKILKENVAVFHSYDEEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKKAL 125
+++ E K+ + ++ ++D + S F K D I+L+ E +
Sbjct: 60 GELQQLEEEEYYEKKELTLYQTHDIKIKSNAYKRFFEVKVDEDLSKIEIILD---ECFIV 116
Query: 126 LKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKV 185
L + F Y +E + + F ++ +N TE+ +K K ++ +
Sbjct: 117 LDTEEYYQEMFAYIKERLAFEGVVFRHFSQMYENLKTELRKYQKEAQNKRFILYASPTFI 176
Query: 186 KDFVNKHHDLIEQYF 200
+ K H L+E+ +
Sbjct: 177 PNTEEKSHFLLEEEY 191
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 26.2 bits (56), Expect = 1.7
Identities = 19/47 (40%), Positives = 25/47 (52%), Gaps = 6/47 (12%)
Query: 236 NRFFKANHSLKIAGEEITNYQKLSDIFEN--EKNRILNNEELKESFD 280
+R F + K++G T Y+ L + FEN EK RIL KE FD
Sbjct: 79 SRLFLYDLYHKVSG--FTGYRHLKEYFENAEEKGRILKG--FKEKFD 121
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 25.8 bits (55), Expect = 2.3
Identities = 68/327 (20%), Positives = 133/327 (39%), Gaps = 50/327 (15%)
Query: 53 NEMPKDNFYPNRKSKIEIEFNGEKI-LKENVAVFHSYDEEFSSEDSVTTFMAKSDLKQQY 111
N + + +Y S EI N + + +A +++ + + +++ K+++K Y
Sbjct: 417 NALKEIPYYSKMVSLEEISLNDYNLNIPRYIAAKQELEKDLFALINSPSYLPKNEIKA-Y 475
Query: 112 DNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTEIESSEKHY 171
D ++ K L K D + + E + IK+ +S E H + + + E
Sbjct: 476 DPYFQVFKELKNTLFKK-SDKEGYYALKTECENIKDLITQSL-EYQTFHASVLSAFESLD 533
Query: 172 SFK-YRDIFDG-----------SKKVKDF----VNKHHDLIEQYFNKYQELLSQSKIFKH 215
F + D+ G SK +K+F + + + + + + Y E+L
Sbjct: 534 LFTTFNDLEPGFNPKTLIESVCSKVLKEFEKVGILDKYGVYQLFKDYYNEVLQDDWFLIS 593
Query: 216 MNSGDFGTNHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENE---KNRILNN 272
N G A +L+K LK ++ NY + D + K+ ++
Sbjct: 594 FN----GFRSAKELRKLTP----------LKDKNKK-ANYLEEPDFIVQKTYYKSDLIPK 638
Query: 273 EELKESFDKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVK 332
+K+ F + E KEL+ ++A+++ LL EF++ S ++ LF LK + ++V
Sbjct: 639 HLIKQRFFEKE-----TKELEELENALNEKEALLDEFIEEHS-NEEGLFDGLK-INESV- 690
Query: 333 SLVNLYREKKPEIEEIIKQASKDQKEW 359
L +E K + KQ K EW
Sbjct: 691 ----LKKELKNATDLEDKQILKTALEW 713
Score = 25.4 bits (54), Expect = 2.9
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 32/128 (25%)
Query: 16 KIQKTSLDFSKSNSYLLYAQNGVFKTSFAKSLTDLINNEMP-------KDNFYPNRKSKI 68
+I KT+L++ ++ + L +N ++ K+ N E+ KD + + K+ +
Sbjct: 705 QILKTALEWLEAKNKALKMKNKAYEELELKAFHQYKNLEINEIKDLIIKDKWLNSLKNAL 764
Query: 69 EIEFNGEKILKENVAVFHSYDEEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKK----A 124
E KI K A + +E SS Y N LLEL+KE K
Sbjct: 765 E-----NKIQKRTNAFASALNEIISS----------------YSNSLLELDKEVKESESK 803
Query: 125 LLKSLRDI 132
+L+ L+D+
Sbjct: 804 VLEHLKDL 811
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 25.8 bits (55), Expect = 2.3
Identities = 17/74 (22%), Positives = 36/74 (47%)
Query: 340 EKKPEIEEIIKQASKDQKEWESVIEIFNQRFLVPFKVELQNQKDILLNKDAAQFRFIFSD 399
EK+ E +E ++A KD++E N+ L + N +++ NK+ ++ +
Sbjct: 149 EKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRE 208
Query: 400 DNQDMNVQKEDLQK 413
+ D + ED+Q+
Sbjct: 209 NELDQMERLEDMQE 222
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 25.8 bits (55), Expect = 2.3
Identities = 14/39 (35%), Positives = 21/39 (52%)
Query: 254 NYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKEL 292
N ++L +FE E+ R+L KE +K EK KE+
Sbjct: 64 NEEELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEV 102
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 25.4 bits (54), Expect = 2.9
Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 22/147 (14%)
Query: 148 EKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELL 207
E+N + +D HL E+E + H F+Y D K + + L
Sbjct: 458 ERNLILGKKMDTHLAELEIFKSHAGFEYTS--DQEKAIAEISRD---------------L 500
Query: 208 SQSKIFKHMNSGDFGTNHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEKN 267
S ++ + SGD G + A+ F S + + +Q FE K
Sbjct: 501 SSHRVMDRLLSGDVGFGKTEVAMHAI-FCAFLNGFQSALVVPTTLLAHQH----FETLKA 555
Query: 268 RILNNEELKESFDKIEKVINANKELKA 294
R N D+ K +K LKA
Sbjct: 556 RFENFGVKVARLDRYIKTSEKSKLLKA 582
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 25.4 bits (54), Expect = 2.9
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 143 KTIKNEKNKSFYEILDNHLTEIESSEKHYS---FKYRDIFDGSKKVKDFVNKHHDLIEQY 199
K ++NEK+ +I L +++ + K YS F + D + KD+ +K + +++
Sbjct: 680 KLLENEKDPKSVKIYATSLLKLQDAYKDYSYTPFGEFALIDAYRTTKDY-SKALETLDKL 738
Query: 200 FNKYQELLSQSKIFKHMNSGDFGTNHADDLKKALE 234
N+ L K +S TN K +LE
Sbjct: 739 LNRRLSLEDHQKALYLQSSLLDLTNQKAKSKASLE 773
>ref|NP_222738.1| putative [Helicobacter pylori J99]
Length = 469
Score = 25.4 bits (54), Expect = 2.9
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 111 YDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNEKNKSFYEILDNHLTEIESSEKH 170
Y+ +L+ K +L L D A + + +YE + + EI+SS+KH
Sbjct: 117 YEGVLINYYKAIDYML--LNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKH 174
Query: 171 YSFKYRDIFDGSKKVKDFVNKHHDLIEQYFNKYQELLS 208
R +V + +N + +++Y YQ LL+
Sbjct: 175 NINMER----SRAEVSEILNNTYSNLDKY-EAYQGLLN 207
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 25.0 bits (53), Expect = 3.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 105 SDLKQQYDNILLELEKEKKALLKSLRDIASGFDYEEEIKTIKNEKN 150
S + + Y ++ LE+EK + SLR EEIK NE N
Sbjct: 411 SSISKMYSSVKKMLEEEKSPFILSLR---------EEIKNRLNELN 447
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 25.0 bits (53), Expect = 3.8
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 246 KIAGEEITNYQKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAISKDNTL 305
K+ +E+ D+ +EK + + E + + +NA K L + + + L
Sbjct: 440 KVGFDEVLKEYLKEDLIPHEKIKDFKTKSKAEKSELLSMELNALKRLCEYFEKGGLEEDL 499
Query: 306 LTEFLDYDSFRKKVLFS-----------YLKQVIQNVKSLVNL 337
LT D ++ KVL Y K++ Q K+ +N+
Sbjct: 500 LTLARDIETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNV 542
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 25.0 bits (53), Expect = 3.8
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 217 NSGDFGTNHADDLKKALENNRFFKANHSLKIAGEEITNYQKLSDIFENEKNRILNNEELK 276
N F + LK N+ F N L I K + + E +K + + ELK
Sbjct: 550 NKVGFIEQYISPLKTNFHKNQKFDDNKILLQLAVYIIENLKDTLLKEQDKPSV-STLELK 608
Query: 277 ESFDKIEKVINANK--------ELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQ 326
E F+ K ++A++ E FKD D+ L EFL + + K++L K+
Sbjct: 609 E-FETHNKSLSASEWEKDIPPYEWLLFKDMRKLDSDLEREFLGFINDHKELLDKKFKE 665
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 25.0 bits (53), Expect = 3.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 105 SDLKQQYDNILLELEKE-KKALLKSLRDIASGFDYEEEIKTIKNE 148
+ L+Q+Y N L+E +KE K A + +YE +KT+ E
Sbjct: 265 NQLQQRYQNALIERDKELKNAKNNKEKHALILANYEHTLKTLNIE 309
>ref|NP_223810.1| glucose-6-phosphate isomerase [Helicobacter pylori J99]
Length = 545
Score = 25.0 bits (53), Expect = 3.8
Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 15/67 (22%)
Query: 65 KSKIEIEFNGEKI-LKENVAVFHSYDEEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKK 123
K KIE F GEKI E AV H T + +D + DN +E+ K +
Sbjct: 71 KEKIEAMFKGEKINTTEKRAVLH------------TALRSLNDAEILLDN--MEVLKSVR 116
Query: 124 ALLKSLR 130
++LK +R
Sbjct: 117 SVLKRMR 123
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 25.0 bits (53), Expect = 3.8
Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 2/42 (4%)
Query: 329 QNVKSLVNLYREKKPEIEEIIKQASKDQKEWESVIEIFNQRF 370
++V L R + EI+ Q SK+ KEW ++E N RF
Sbjct: 802 RSVTVLAEPNRNAGVSLGEILTQVSKNTKEW--LVEGANYRF 841
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 25.0 bits (53), Expect = 3.8
Identities = 19/110 (17%), Positives = 43/110 (38%), Gaps = 11/110 (10%)
Query: 256 QKLSDIFENEKNRILNNEELKESFDKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSF 315
QK +IF+N + E K + ++ ++++NA K ++ S + + + +
Sbjct: 121 QKHQEIFDNLHAHFPHVESFKTALNEQQEILNALKSIEEEAANCSDSSMQAMDIMQFQDI 180
Query: 316 RKKVLFSYLKQVIQNVKSLVNLYREKKPEIEEIIKQASKDQKEWESVIEI 365
+ Q ++ +VN+ R + + + D K S I
Sbjct: 181 HR-----------QKIERVVNVMRALSQYMNSLFEGKIDDSKRVSSATYI 219
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 24.6 bits (52), Expect = 5.0
Identities = 23/101 (22%), Positives = 42/101 (40%), Gaps = 6/101 (5%)
Query: 27 SNSYLLYAQNGVFKTSFAKSLTDLINNEMPKDNFYPNRKSKIEIEFNGEKILKENVAVFH 86
+N L NGV + + D I P + Y + I N + A++
Sbjct: 563 NNGAFLSLPNGVKIPLYDPTTAD-IQASKPNEVTYRQLMDAMSIALNYSNT---DPAIYQ 618
Query: 87 SYDEEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKKALLK 127
+ +S++S F+ LKQ DN+ + L +E K +++
Sbjct: 619 QISDNPTSKESKERFIEL--LKQAKDNLSINLNEEGKVIIQ 657
>ref|NP_222892.1| SERINE HYDROXYMETHYLTRANSFERASE [Helicobacter pylori J99]
Length = 416
Score = 24.6 bits (52), Expect = 5.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 143 KTIKNEKNKSFYEILDNHLTEIESSEKHYSFKYRDIFDGSKKVKDFVNKH 192
KT+K + +K NHL ++ +K YS K DI G+ + VNK+
Sbjct: 295 KTLKEKNHKLVSGGTSNHLLLMDFLDKPYSGKDADIALGNAGIT--VNKN 342
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 24.3 bits (51), Expect = 6.6
Identities = 17/74 (22%), Positives = 31/74 (40%), Gaps = 3/74 (4%)
Query: 267 NRILNNEELK---ESFDKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSY 323
N LN E ++ + +KI K+ E+ + + N L K+ Y
Sbjct: 43 NPFLNQERIQTISNAQNKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTPTEKQAETYY 102
Query: 324 LKQVIQNVKSLVNL 337
L+ +QN++ +V L
Sbjct: 103 LQSTLQNIEKIVML 116
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 24.3 bits (51), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 276 KESFDKIEKVINANKELKAFKDAISK 301
+E+ D I + INA + L AFK+A K
Sbjct: 356 EENTDAIIQAINAKEGLNAFKNAEGK 381
>ref|NP_223165.1| putative [Helicobacter pylori J99]
Length = 86
Score = 24.3 bits (51), Expect = 6.6
Identities = 11/36 (30%), Positives = 22/36 (60%), Gaps = 2/36 (5%)
Query: 228 DLKKALENNRFFKANHSLKIAGEEITN--YQKLSDI 261
+LK +N +F+ N S++++ E N +QK+S +
Sbjct: 44 ELKNTSKNAKFYSFNVSMEVSNEAERNEIFQKISQL 79
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 24.3 bits (51), Expect = 6.6
Identities = 17/74 (22%), Positives = 31/74 (40%), Gaps = 3/74 (4%)
Query: 267 NRILNNEELK---ESFDKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSY 323
N LN E ++ + +KI K+ E+ + + N L K+ Y
Sbjct: 48 NPFLNQERIQTISNAQNKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTPTEKQAETYY 107
Query: 324 LKQVIQNVKSLVNL 337
L+ +QN++ +V L
Sbjct: 108 LQSTLQNIEKIVML 121
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 24.3 bits (51), Expect = 6.6
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 269 ILNNEELKESFDKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQVI 328
++++E+L + + +++ NK L + A K E L D+ + +V+
Sbjct: 329 VIDSEDLPLNVSR--EILQQNKILANIRSASVKKILSEIERLSKDNKNYHKFYEPFGKVL 386
Query: 329 QNVKSLVNLYR--EKKPEIEEIIKQASKDQKEWESVIE 364
+ LY E K ++ E+++ SKD+ EW S+ E
Sbjct: 387 KE-----GLYGDFENKEKLLELLRFYSKDKGEWISLKE 419
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 24.3 bits (51), Expect = 6.6
Identities = 21/91 (23%), Positives = 41/91 (44%), Gaps = 7/91 (7%)
Query: 65 KSKIEIEFNGEKILKENVAVFHSYDEEFSSEDSVTTFMAKSDLKQQYDNILLELEKEKKA 124
KS+IE+E +K K + + +S + KQ+ + +ELE++K+
Sbjct: 159 KSEIELEQERQKTNKSGIELANSQIKAEQERQKT------EQEKQKANKSEIELEQQKQK 212
Query: 125 LLKSLRD-IASGFDYEEEIKTIKNEKNKSFY 154
+ + RD I D+ +E + EK+ +
Sbjct: 213 TINTQRDLIKEQKDFIKETEQNCQEKHGQLF 243
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 24.3 bits (51), Expect = 6.6
Identities = 19/85 (22%), Positives = 40/85 (46%), Gaps = 13/85 (15%)
Query: 273 EELKESFDKIEKVINANKELKAFKDAISKDNTLLTEFLDYDSFRKKVLFSYLKQVIQNVK 332
EE+ S DK++ VI KE + + + D+ +F D F K ++ ++
Sbjct: 552 EEVGLSLDKVKNVIKVTKEPISLETPVGNDDD--GKFGD---------FVEDKNIVSSID 600
Query: 333 SLVNLYREKKPEIEEIIKQASKDQK 357
++ + K +IE ++ Q ++ +K
Sbjct: 601 HIMR--EDLKAQIESVLDQLNEREK 623
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 23.9 bits (50), Expect = 8.6
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 388 KDAAQFRFIFSDDNQDMNVQKEDLQKHLSGGEKESVIYLTNL 429
KD + F DN + N QK L L G + L NL
Sbjct: 714 KDEEDYIAYFCGDNLEKNAQKRRLFYQLVGAFLRMFVELNNL 755
>ref|NP_223726.1| DEOXYCYTIDINE TRIPHOSPHATE DEAMINASE [Helicobacter pylori J99]
Length = 188
Score = 23.9 bits (50), Expect = 8.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 47 LTDLINNEMPKDNFYPNRKSKIEIEFNGEKILKENV-AVFHSYDEEFSSEDSVTTFMAKS 105
L D N + NF PN +KI+ G IL N A+ H+ + +D++ + KS
Sbjct: 51 LFDNKNALIDPKNFDPNNATKIDASKEGFFILPANAFALAHTIEYFKMPKDTLAICLGKS 110
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.133 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,095
Number of Sequences: 1491
Number of extensions: 28882
Number of successful extensions: 174
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 82
length of query: 430
length of database: 494,079
effective HSP length: 80
effective length of query: 350
effective length of database: 374,799
effective search space: 131179650
effective search space used: 131179650
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)