BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646132|ref|NP_208314.1| hypothetical protein
[Helicobacter pylori 26695]
(115 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224131.1| putative [Helicobacter pylori J99] 214 6e-58
ref|NP_223176.1| putative [Helicobacter pylori J99] 36 3e-04
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 32 0.006
ref|NP_223417.1| putative [Helicobacter pylori J99] 31 0.010
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 30 0.023
ref|NP_223560.1| putative [Helicobacter pylori J99] 30 0.023
ref|NP_222796.1| putative [Helicobacter pylori J99] 30 0.023
ref|NP_223084.1| putative [Helicobacter pylori J99] 29 0.038
ref|NP_222780.1| putative [Helicobacter pylori J99] 29 0.038
ref|NP_224090.1| putative [Helicobacter pylori J99] 28 0.050
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 28 0.066
ref|NP_223830.1| putative [Helicobacter pylori J99] 27 0.19
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 27 0.19
ref|NP_224145.1| arginase [Helicobacter pylori J99] 26 0.25
ref|NP_223650.1| putative [Helicobacter pylori J99] 26 0.33
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 25 0.42
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 25 0.55
ref|NP_223713.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 25 0.55
ref|NP_223971.1| putative [Helicobacter pylori J99] 25 0.72
ref|NP_223788.1| putative [Helicobacter pylori J99] 25 0.72
ref|NP_223490.1| putative [Helicobacter pylori J99] 25 0.72
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 24 0.95
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 24 1.2
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 24 1.2
ref|NP_222874.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 23 1.6
ref|NP_223642.1| putative [Helicobacter pylori J99] 23 1.6
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 23 1.6
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 23 2.1
ref|NP_223025.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 23 2.8
ref|NP_224099.1| putative [Helicobacter pylori J99] 22 3.6
ref|NP_223279.1| ADENYLATE KINASE [Helicobacter pylori J99] 22 3.6
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 22 3.6
ref|NP_224041.1| putative [Helicobacter pylori J99] 22 4.7
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 22 4.7
ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pyl... 22 6.1
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 21 8.0
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 21 8.0
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 21 8.0
ref|NP_223614.1| putative [Helicobacter pylori J99] 21 8.0
ref|NP_223371.1| putative abc transporter, ATP-binding prot... 21 8.0
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 21 8.0
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 214 bits (544), Expect = 6e-58
Identities = 104/115 (90%), Positives = 108/115 (93%)
Query: 1 MKSKITHFIAISFVLSLFSACKDEPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEED 60
MKSKITHFI ISFVLS+ SACKDEPKKSSQSHQNNTK T+NN INQ N DI+KIEHEEED
Sbjct: 1 MKSKITHFIVISFVLSVLSACKDEPKKSSQSHQNNTKTTQNNQINQPNKDIKKIEHEEED 60
Query: 61 EKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNLNSPLNRKY 115
EK TKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNL+SPLNRKY
Sbjct: 61 EKVTKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNLSSPLNRKY 115
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 35.8 bits (81), Expect = 3e-04
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 24 EPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKE---------VNDLINNE 74
E ++ S+ + TK TK + R+ EH+E DEK T+E N+ +N +
Sbjct: 300 EERRRSRDERKKTKATKK----AMEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAK 355
Query: 75 NKIDEINNEENADPSQKRTNNVLQRATNHQDNLNSPLNRK 114
EIN E +PS + NN + T + L +K
Sbjct: 356 ENEREINQESANEPSSE--NNATLKDTENTSVLKESAAKK 393
Score = 22.7 bits (47), Expect = 2.8
Identities = 19/112 (16%), Positives = 41/112 (35%), Gaps = 20/112 (17%)
Query: 23 DEPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNEN------- 75
+ +K ++ + ++ K N A + R+I E +E +++ L + EN
Sbjct: 330 ERDEKETEERRKALEMDKGNEKVNAKENEREINQESANEPSSENNATLKDTENTSVLKES 389
Query: 76 -------------KIDEINNEENADPSQKRTNNVLQRATNHQDNLNSPLNRK 114
+ + E+ +++R QRA HQ+ L +
Sbjct: 390 AAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEER 441
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 31.6 bits (70), Expect = 0.006
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 27 KSSQSHQNNTKITKNNPINQANNDIRKIE-----HEEEDEKATKEVNDLINNE-NKIDE- 79
K +++ K+ N ANN ++K+E E+E +KA +++ + + KIDE
Sbjct: 115 KDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDES 174
Query: 80 INNEENA 86
+ N+E+A
Sbjct: 175 VKNKEDA 181
>ref|NP_223417.1| putative [Helicobacter pylori J99]
Length = 185
Score = 30.8 bits (68), Expect = 0.010
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 1 MKSKITHFIAISFVLSL-FSACKDEPKKSSQSHQNNT 36
+K+ FIA+ F++ L FSACK+ K SQ QNNT
Sbjct: 3 IKAYFLRFIALVFIVLLGFSACKNSQK--SQDSQNNT 37
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 29.6 bits (65), Expect = 0.023
Identities = 19/49 (38%), Positives = 30/49 (60%), Gaps = 6/49 (12%)
Query: 26 KKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEK-ATKEVNDLINN 73
KK S+ QN+ +ITKNN + Q +K+ EE +EK + E +D++ N
Sbjct: 1029 KKYSKEVQNHYEITKNNFLEQ-----KKVLGEEHEEKLSILEKDDILPN 1072
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 29.6 bits (65), Expect = 0.023
Identities = 28/97 (28%), Positives = 38/97 (38%), Gaps = 14/97 (14%)
Query: 28 SSQSHQNNTKITKNNPI--NQANNDIRK---IEHEEEDEKATKEVNDLIN----NENKID 78
+S +HQ N + NPI N ANN I+ H +D K K++ L N + I
Sbjct: 145 ASNAHQTN--LPNKNPITPNHANNAIKNPTTPTHNVKDPKTLKDIQTLSQKHDLNASNIQ 202
Query: 79 EINNEENADP---SQKRTNNVLQRATNHQDNLNSPLN 112
EN +P S Q + NH N N
Sbjct: 203 AATTPENKNPLNASDHLALKTTQASINHTLTKNDAKN 239
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 29.6 bits (65), Expect = 0.023
Identities = 16/67 (23%), Positives = 33/67 (48%), Gaps = 2/67 (2%)
Query: 41 NNPINQA--NNDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQ 98
NNP+ Q I +++ ++ + N LIN N ++ +N+++ D + T+N
Sbjct: 424 NNPMQQPAQQTPINNMDNTHANDSKDQGGNALINPNNATNDDHNDDHMDTNTTDTSNAND 483
Query: 99 RATNHQD 105
T+ +D
Sbjct: 484 TPTDDKD 490
Score = 21.6 bits (44), Expect = 6.1
Identities = 11/53 (20%), Positives = 23/53 (42%)
Query: 35 NTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEENAD 87
NT + ++ NN + +D + ++ D +NN N +++ N D
Sbjct: 511 NTDTGNTDDMSNMNNGNDDTGNTNDDMGNSNDMGDDMNNANDMNDDMGNSNDD 563
>ref|NP_223084.1| putative [Helicobacter pylori J99]
Length = 160
Score = 28.9 bits (63), Expect = 0.038
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 47 ANNDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEE--NADPSQKRTNNVLQRATNH 103
A N+I+ I+ +D K + E N + N+ N +E++NEE N + S + +Q T++
Sbjct: 92 AENEIKSIQDLMQDYKRSLETNTIPNHLN--EEVSNEEALNKEVSSDESPKEVQLTTDN 148
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 28.9 bits (63), Expect = 0.038
Identities = 19/83 (22%), Positives = 33/83 (38%), Gaps = 4/83 (4%)
Query: 31 SHQNNTKITKNNPINQANNDIR----KIEHEEEDEKATKEVNDLINNENKIDEINNEENA 86
S+ + + KN + + KI+ D A E D + E + N +
Sbjct: 297 SYNESLTLAKNRCVKNFKEALEGFTEKIKESPNDSNAINEAFDNLETELERATENLSQKI 356
Query: 87 DPSQKRTNNVLQRATNHQDNLNS 109
DP +R N Q+A +++ L S
Sbjct: 357 DPVLERNENYTQKALEYREFLES 379
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 28.5 bits (62), Expect = 0.050
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 9 IAISFVLSLFSACKDEPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVN 68
IA+ LSL K E K++S Q NT T N N NN E E + ++
Sbjct: 73 IALIVALSLLLGHKKENKQTSL--QTNTATTNNETPNDTNN------AEAEGQIENLDLP 124
Query: 69 DLINNENKIDEINNEENADPSQKRTN 94
DLI ++ + N+E D ++ +
Sbjct: 125 DLIGKDSL--KRNDESQVDAMMQKAS 148
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 28.1 bits (61), Expect = 0.066
Identities = 16/66 (24%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
Query: 33 QNNTKITKNNPINQANNDIRKIEHE-EEDEKATKEVNDLI-NNENKIDEINNEENADPSQ 90
+N T + +N P +++ I K + + +E +K+ + +N L +N N + N+ N ++
Sbjct: 133 ENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVSNAK 192
Query: 91 KRTNNV 96
K + V
Sbjct: 193 KEISEV 198
Score = 22.3 bits (46), Expect = 3.6
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 54 IEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKR 92
+ EEE+++A + +ND + + K +N S+K+
Sbjct: 318 LNKEEEEKEARQNINDRVRVQRKNPWMNEAGIKRQSKKK 356
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 26.6 bits (57), Expect = 0.19
Identities = 17/63 (26%), Positives = 27/63 (41%), Gaps = 4/63 (6%)
Query: 22 KDEPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINN-ENKIDEI 80
+ E +K+ Q Q + I NN I + E+E +K DL+N E E
Sbjct: 153 EQEKQKTEQEKQKTSNIETNNQIKVEQEQQKT---EQEKQKTNNTQKDLVNKAEQNCQEN 209
Query: 81 NNE 83
+N+
Sbjct: 210 HNQ 212
Score = 26.2 bits (56), Expect = 0.25
Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 22 KDEPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNENKIDEIN 81
+ E +K+ Q Q + + + + K + E+E +K + N NN+ K+++
Sbjct: 125 EQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTS---NIETNNQIKVEQ-- 179
Query: 82 NEENADPSQKRTNNVLQRATN 102
++ + +++TNN + N
Sbjct: 180 EQQKTEQEKQKTNNTQKDLVN 200
Score = 23.9 bits (50), Expect = 1.2
Identities = 18/95 (18%), Positives = 39/95 (40%), Gaps = 4/95 (4%)
Query: 10 AISFVLSLFSACKDEPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVND 69
AI+ +L D+ KK Q + N ++AN ++E EE+ + K+ +
Sbjct: 84 AITAMLMNVCFADDQSKKEVAQAQKEAE----NARDRANKSGIELEQEEQKTEQEKQKTE 139
Query: 70 LINNENKIDEINNEENADPSQKRTNNVLQRATNHQ 104
+ + ++ E+ +++ TN+Q
Sbjct: 140 QEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQ 174
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 26.6 bits (57), Expect = 0.19
Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 23 DEPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNENKIDEINN 82
+E + S N T + N + A+ +K +D++ + L K++E ++
Sbjct: 64 EETQTQMDSGGNETSESSNGSL--ADKLFKKARKLVDDKRPFTQQKSLDEETQKLNEEDD 121
Query: 83 EENADPSQKRTNNVLQRATNHQDNLNSP 110
+EN + ++ +++ T+ + +SP
Sbjct: 122 QENNEHQEETQTDLIDDETSEKTQQDSP 149
Score = 24.6 bits (52), Expect = 0.72
Identities = 19/80 (23%), Positives = 37/80 (45%), Gaps = 6/80 (7%)
Query: 41 NNPINQANNDIRK-----IEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNN 95
N +Q NN+ ++ + +E EK ++ ++NE + + E+ S + ++N
Sbjct: 117 NEEDDQENNEHQEETQTDLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSDN 176
Query: 96 VLQRATNHQDN-LNSPLNRK 114
L T DN L++P K
Sbjct: 177 HLDNPTESSDNHLDNPTETK 196
Score = 22.3 bits (46), Expect = 3.6
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 57 EEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNLNSPLNRK 114
+++ EK K + NKID+ E + S+ N +++ + D +P++ K
Sbjct: 1501 DDDKEKGKKPTAETKAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDK 1558
>ref|NP_224145.1| arginase [Helicobacter pylori J99]
Length = 322
Score = 26.2 bits (56), Expect = 0.25
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 7/43 (16%)
Query: 37 KITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNENKIDE 79
++T+ NP A +H +E+EK E+ DLI N KI +
Sbjct: 278 EVTEYNPTVSA-------KHTDEEEKQVLEILDLIINRCKIKD 313
>ref|NP_223650.1| putative [Helicobacter pylori J99]
Length = 267
Score = 25.8 bits (55), Expect = 0.33
Identities = 12/41 (29%), Positives = 21/41 (50%), Gaps = 1/41 (2%)
Query: 52 RKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKR 92
+K+E + A +E NN+N +D +NE P ++R
Sbjct: 228 KKLEKQSHSLNALQEQQGYSNNDNSLDN-SNENTYTPKRRR 267
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 25.4 bits (54), Expect = 0.42
Identities = 30/137 (21%), Positives = 54/137 (38%), Gaps = 36/137 (26%)
Query: 5 ITHFIAISFVLSLFSACKDEPKKSSQSHQNNTKITKNN-------PIN------------ 45
+ F +S V S++++ K S ++ Q N KI NN P N
Sbjct: 476 VNSFNLVSQVWSVYNSLKT----SEENLQKNAKILCNNGSQSGTSPCNSSSGGLSISGNA 531
Query: 46 QANNDIRKIEHEEEDEKATKEVNDL-----INNENKIDEINNEENADPSQKRTNN----- 95
Q N + + +A + L +NNE + N +++ P+ + +N+
Sbjct: 532 QLQNILSPTNGTTTNTQAKSNASKLKAMVMVNNEEEAKTTNFNQSSGPTTQSSNSTVMGA 591
Query: 96 ---VLQRATNHQDNLNS 109
VLQ +N Q ++ S
Sbjct: 592 LNTVLQNVSNFQQSIQS 608
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 25.0 bits (53), Expect = 0.55
Identities = 17/54 (31%), Positives = 24/54 (43%), Gaps = 13/54 (24%)
Query: 30 QSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNENKIDEINNE 83
Q+ QNN T NNP N AT ++ L+NN NK+ ++ E
Sbjct: 110 QNGQNNNGDTGNNPPRGNVN-------------ATFDMQSLVNNLNKLTQLIGE 150
>ref|NP_223713.1| putative [Helicobacter pylori J99]
Length = 75
Score = 25.0 bits (53), Expect = 0.55
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 51 IRKIEHEEEDEKATKEVNDLINNENKIDEI 80
I KI+ +EE+ A ++ N +N +N+ +I
Sbjct: 18 IEKIQKQEEELSALRQANTTLNAQNEEKDI 47
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 25.0 bits (53), Expect = 0.55
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 43 PINQANNDIRKIE--HEEEDEKATKEVNDLINNENKIDEINNEE 84
PI++ ++K+ H+E + K T ++++ NN I N E+
Sbjct: 173 PISKIIRKVKKLAKAHQESNAKITARLSEVFNNVEAIKISNGEK 216
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 24.6 bits (52), Expect = 0.72
Identities = 18/66 (27%), Positives = 33/66 (49%), Gaps = 7/66 (10%)
Query: 33 QNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKR 92
Q N K++++N Q ++ + K+ +E N L NN++++ EI + SQ+R
Sbjct: 25 QTNAKLSRSN--EQLSDMLYKL-----NESLRIYQNVLSNNQDQLKEIKKANSTLTSQRR 77
Query: 93 TNNVLQ 98
N Q
Sbjct: 78 FFNASQ 83
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 24.6 bits (52), Expect = 0.72
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 57 EEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNN 95
+E DEK+ K+V +L E +I+ + E N S+ + N
Sbjct: 119 KELDEKS-KQVQELHQKEAEIERLKRENNEAESRLKAEN 156
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 24.6 bits (52), Expect = 0.72
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 40 KNNPINQANNDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQK 91
++N N N+ I E + EK +L++ N D NNE+NA+ SQK
Sbjct: 80 EDNSFNPENSVILLNEPSDNSEK------NLLSYPN--DPNNNEDNANNSQK 123
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 24.3 bits (51), Expect = 0.95
Identities = 12/31 (38%), Positives = 16/31 (50%)
Query: 44 INQANNDIRKIEHEEEDEKATKEVNDLINNE 74
I A ND KI +E +EK E+ +N E
Sbjct: 93 IENAKNDGYKIGFKEGEEKMRNELTHSVNEE 123
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 23.9 bits (50), Expect = 1.2
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 30 QSHQNNTK--ITKNNPINQANNDIRKIEH--EEEDEKATKEVNDLINNENKIDEINNEEN 85
Q+ NN++ +T N N +N+ ++ + + ++T+ +N+ N K+ +NNE
Sbjct: 283 QNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELK 342
Query: 86 ADP 88
A+P
Sbjct: 343 ANP 345
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter
pylori J99]
Length = 2902
Score = 23.9 bits (50), Expect = 1.2
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 22 KDEPKKSSQSHQNNTKITK 40
K +PKK +SHQN I K
Sbjct: 5 KKKPKKIKRSHQNQKTILK 23
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 19 SACKDEPKKSSQSHQNNTKITKNNPINQANND 50
+A P ++Q++ +++ + N PI NND
Sbjct: 2206 TASATNPCTTAQNNASSSNASNNAPIALNNND 2237
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 23.9 bits (50), Expect = 1.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 31 SHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNE 74
SH NT +KN + KIE +E+ + +E ++I E
Sbjct: 43 SHLQNTPNSKNANTPLEPKNAAKIETQEKITEEKEEAKEIITEE 86
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 23.5 bits (49), Expect = 1.6
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 33 QNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNENKIDEI 80
Q K+ PI++ + +K EEE E K +ND I + ID +
Sbjct: 396 QELKKLDDKTPISKEADKDKK--SEEEKEVTPKMINDDIQLKTAIDSL 441
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 23.5 bits (49), Expect = 1.6
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 24 EPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLI 71
E + ++ + + +++NPI + K E EEE E KE + +
Sbjct: 132 ENSELEKAFKKDLSFSQSNPIPLDKKETSKEEKEEELESKEKEPKETL 179
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 23.5 bits (49), Expect = 1.6
Identities = 12/37 (32%), Positives = 19/37 (50%)
Query: 51 IRKIEHEEEDEKATKEVNDLINNENKIDEINNEENAD 87
+ K + ++EK TKE N N N + N+ +N D
Sbjct: 167 VPKAKEAPKNEKKTKENNPPFNRINLMKGENHAKNED 203
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 23.1 bits (48), Expect = 2.1
Identities = 17/55 (30%), Positives = 23/55 (40%), Gaps = 2/55 (3%)
Query: 51 IRKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQD 105
+ KI E V L+N KI ++ E A QKR N+ T+ QD
Sbjct: 427 MEKISEEIAKNHQVIVVYPLVNKSEKIPYLSLSEGASFWQKRFKNIY--TTSGQD 479
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 22.7 bits (47), Expect = 2.8
Identities = 10/57 (17%), Positives = 28/57 (48%)
Query: 40 KNNPINQANNDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNV 96
+N+ +DI+ + +EE +K + + +N ++ + +N E + +T ++
Sbjct: 434 ENDTETPKESDIKAPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENKTLSI 490
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 22.7 bits (47), Expect = 2.8
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 19 SACKDEPKKSSQSHQNNTKITKNNPINQANNDIRKIEHEEEDEKATKEVNDLINNEN 75
S+ KD P S + + I KNN NN+ +I + + ++ + +I N
Sbjct: 191 SSGKDIPALSDTNTELKFTINKNNGNTNTNNNGEEIVTKNNAQVLLEQASTIITTLN 247
>ref|NP_224099.1| putative [Helicobacter pylori J99]
Length = 329
Score = 22.3 bits (46), Expect = 3.6
Identities = 12/55 (21%), Positives = 24/55 (42%)
Query: 53 KIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNL 107
K+ E KA K V+D + ++ + IN+ + + K N+ + +L
Sbjct: 85 KLAQAEAGHKAAKAVSDEVKRGSRDETINSARDVWQAAKSQANLAKETYKRVQDL 139
>ref|NP_223279.1| ADENYLATE KINASE [Helicobacter pylori J99]
Length = 191
Score = 22.3 bits (46), Expect = 3.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 65 KEVNDLINNENKIDEINNE 83
K ++ +IN E I+EI NE
Sbjct: 163 KHLHKIINGERSIEEIVNE 181
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 22.3 bits (46), Expect = 3.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 52 RKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQK 91
+K E+ ++A +E ENK E N E + +++
Sbjct: 3 KKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNKAKE 42
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 21.9 bits (45), Expect = 4.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 72 NNENKIDEINNEENADPSQKRTNNVLQRATNHQ 104
NN+N + N+ EN+ + +R TN +
Sbjct: 4 NNQNNENHENSSENSKDHHEARAGAFERFTNRK 36
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 21.9 bits (45), Expect = 4.7
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 28 SSQSHQNNTKITKNNPINQANN 49
SS S NNT I ++ + ANN
Sbjct: 960 SSASFSNNTTINLDDSVLNANN 981
>ref|NP_223181.1| 50S RIBOSOMAL PROTEIN L9 [Helicobacter pylori J99]
Length = 149
Score = 21.6 bits (44), Expect = 6.1
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 37 KITKNNPINQANNDIRKIEHEEEDEKATK 65
K+ N IN+ +++K +E EKA K
Sbjct: 37 KLATNEVINKYKAEVKKKAEKEALEKAQK 65
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 74 ENKIDEINNEENADPSQKRTNNVLQRATNHQDN 106
+NKID++ E + +Q+ V + H+ N
Sbjct: 400 DNKIDKLKKEGKVEEAQELHLKVNEERRIHKQN 432
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 21.2 bits (43), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (56%)
Query: 69 DLINNENKIDEINNEENADPSQKRTNNV 96
DL+ +ENKI+ I E +A + N V
Sbjct: 78 DLLGDENKIEFIPVEASARVEFLKANKV 105
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 21.2 bits (43), Expect = 8.0
Identities = 12/68 (17%), Positives = 27/68 (39%)
Query: 48 NNDIRKIEHEEEDEKATKEVNDLINNENKIDEINNEENADPSQKRTNNVLQRATNHQDNL 107
NN R + ++ + ++ L + KI++I E + +K + ++A +
Sbjct: 483 NNYERFFKAKKLQDMVLQDTEPLFSKIEKIEKIEKIEKIEKIEKGEEALAEKAEKKEKEK 542
Query: 108 NSPLNRKY 115
P Y
Sbjct: 543 APPTQENY 550
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 21.2 bits (43), Expect = 8.0
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 15 LSLFSACKDEPKKSSQSHQNNTKI 38
LS+ K+ +K+ Q H NN K+
Sbjct: 194 LSILKRFKEINEKNYQDHLNNEKL 217
>ref|NP_223371.1| putative abc transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 240
Score = 21.2 bits (43), Expect = 8.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 50 DIRKIEHEEEDEKATKEVNDL 70
DI K EH + K TK V+D+
Sbjct: 2 DILKAEHLNKQIKKTKIVSDV 22
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 21.2 bits (43), Expect = 8.0
Identities = 8/30 (26%), Positives = 19/30 (62%)
Query: 51 IRKIEHEEEDEKATKEVNDLINNENKIDEI 80
I +I H+EE ++ +V + + + +ID++
Sbjct: 126 IEEIFHDEELLHSSYKVGESVGSAKRIDDV 155
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.304 0.122 0.325
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,212
Number of Sequences: 1491
Number of extensions: 6611
Number of successful extensions: 54
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of query: 115
length of database: 494,079
effective HSP length: 67
effective length of query: 48
effective length of database: 394,182
effective search space: 18920736
effective search space used: 18920736
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 43 (21.2 bits)