BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646138|ref|NP_208320.1| purine nucleoside
phosphorylase (punB) [Helicobacter pylori 26695]
(180 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224136.1| putative [Helicobacter pylori J99] 336 2e-94
ref|NP_223578.1| putative [Helicobacter pylori J99] 32 0.013
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 27 0.42
ref|NP_223821.1| PURINE NUCLEOSIDE PHOSPHORYLASE [Helicobac... 25 1.6
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 24 2.1
ref|NP_224021.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223742.1| 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE... 23 3.6
ref|NP_223664.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_223600.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [... 23 6.1
ref|NP_222989.1| 3-DEHYDROQUINATE SYNTHASE [Helicobacter py... 23 6.1
ref|NP_223626.1| 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPH... 22 7.9
>ref|NP_224136.1| putative [Helicobacter pylori J99]
Length = 180
Score = 336 bits (861), Expect = 2e-94
Identities = 170/180 (94%), Positives = 177/180 (97%)
Query: 1 MLLCAGRNETLKKAVPIGVGLIESAINLTRMCLKNPDTESLIFIGSAGSYSPEMELLSVF 60
MLLCAGRNETLKKAVPIGVGLIESAINLTRMCLKNPDTESLIFIGSAGSYSPE E+LSVF
Sbjct: 1 MLLCAGRNETLKKAVPIGVGLIESAINLTRMCLKNPDTESLIFIGSAGSYSPETEILSVF 60
Query: 61 ESVCGYQIEESFSHLNSYTPLDNFIHIETEEQALFERVRVNSSNYIHTSEMFAKKMVQKG 120
ES+ GYQIEESFSHLNSYTPLDNFIHIET+EQALFERVRVNSSNYIHTSEMFAKKMVQKG
Sbjct: 61 ESIEGYQIEESFSHLNSYTPLDNFIHIETKEQALFERVRVNSSNYIHTSEMFAKKMVQKG 120
Query: 121 VLLENMEFFSVLSVAKAFSLKAKGIFCVSNYVGLNAYQEFKENHAKVKQILENIIDSLII 180
VLLENMEFFSVLSVAK FSLKAKGIFCVSN+VGLNA++EFKENHAKVKQILENIIDSLI+
Sbjct: 121 VLLENMEFFSVLSVAKIFSLKAKGIFCVSNHVGLNAHKEFKENHAKVKQILENIIDSLIV 180
>ref|NP_223578.1| putative [Helicobacter pylori J99]
Length = 381
Score = 31.6 bits (70), Expect = 0.013
Identities = 31/137 (22%), Positives = 57/137 (40%), Gaps = 24/137 (17%)
Query: 54 MELLSVFESVCGYQIEE-SFSHLNSYTPLDN-FIHIETEEQALFER---------VRVNS 102
+E+L +F + G +I E ++ L L FI + + L E+ +++ S
Sbjct: 57 LEMLQIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQERNLKILS 116
Query: 103 SNYIHTSEMFAKKMVQKGVLLENMEFFSVLSVAKAFSLKAKGI------FCVSNYVGLNA 156
NY H ++ G L N F + + K + + F + NY G
Sbjct: 117 LNYHHNK-------IKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIAQFGMPNYFGSQR 169
Query: 157 YQEFKENHAKVKQILEN 173
+ +F +NH + +IL+N
Sbjct: 170 FGKFNDNHKEGLKILQN 186
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 26.6 bits (57), Expect = 0.42
Identities = 27/110 (24%), Positives = 52/110 (46%), Gaps = 10/110 (9%)
Query: 67 QIEESFSHLNSYTPL-DNFIHIETEEQALFERVRVNSSNYIHTSEMFAKKMVQKGVLLEN 125
++EE + LN L D FI + E+ LF+ +++N S + A + K +L
Sbjct: 652 ELEELENALNEKEALLDEFIEEHSNEEGLFDGLKINES-VLKKELKNATDLEDKQILKTA 710
Query: 126 MEFFSVLSVAKAFSLKAKGIFCVSNYVGLNAYQEFKENHAKVKQILENII 175
+E+ + KA +K K + L A+ ++K + ++ +I + II
Sbjct: 711 LEWLEAKN--KALKMKNKAY----EELELKAFHQYK--NLEINEIKDLII 752
>ref|NP_223821.1| PURINE NUCLEOSIDE PHOSPHORYLASE [Helicobacter pylori J99]
Length = 233
Score = 24.6 bits (52), Expect = 1.6
Identities = 12/42 (28%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Query: 18 GVGLIESAINLTRMCLKNPDTESLIFIGSAGSYSPEMELLSV 59
G+G+ I +T + +K + L+ IG+ G+ SP++ L +
Sbjct: 63 GMGIASCTIYVTEL-IKTYQVKELLRIGTCGAISPKVGLKDI 103
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 24.3 bits (51), Expect = 2.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 119 KGVLL-----ENMEFFSVLSVAKAFSLKAKG--IFCVSNYVGLNAYQE-----FKENHAK 166
KGVL+ N+ L+V+KA + IF +S+ V + A + FKENH
Sbjct: 426 KGVLVLDEMDSNLSGEESLAVSKALETLSSHSQIFAISHQVHIPAVAKNHILVFKENHKS 485
Query: 167 VKQILEN 173
+ + L N
Sbjct: 486 LAKTLNN 492
>ref|NP_224021.1| putative [Helicobacter pylori J99]
Length = 410
Score = 23.5 bits (49), Expect = 3.6
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 18 GVGLIESAIN--LTRMCLKNPDTESLI 42
G G + A+N L+++C+ NP T L+
Sbjct: 68 GYGFTDLALNDLLSQLCIFNPKTNQLV 94
>ref|NP_223742.1| 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE [Helicobacter pylori
J99]
Length = 208
Score = 23.5 bits (49), Expect = 3.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 9 ETLKKAVPIGVGLIESAINLTRMCLKN 35
E +K AVP+ LIE I + + L++
Sbjct: 21 ENIKDAVPLAQSLIEGGIPIIEVTLRS 47
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 23.5 bits (49), Expect = 3.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 92 QALFERVRVNSSNYIHTSEMFAKKMVQK 119
QA ER++ N+ NY +++ AK++ +K
Sbjct: 117 QANTERIKENAQNYDIRNQIAAKRISEK 144
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.1 bits (48), Expect = 4.7
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 97 RVRVNSSNYIHTSEMFAKKMVQKGVLLENMEFFSVLSVAKAFSLKAKGIFCVSNYVGLNA 156
+++++ + E KK ++ E + F+VL ++A L A +SN VGLN
Sbjct: 293 QLKISPKKVLEILENRLKKSIE--TTNETLNAFNVLD-SQAIDLNA-----ISNSVGLNP 344
Query: 157 YQEFK 161
QE K
Sbjct: 345 TQESK 349
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 23.1 bits (48), Expect = 4.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 145 IFCVSNYVGLNAYQEFKENHAKVKQI 170
+ Y+ LNAY + K+ H K ++
Sbjct: 308 VLSFEEYMLLNAYMDLKQEHKKAYKL 333
>ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [Helicobacter pylori J99]
Length = 329
Score = 22.7 bits (47), Expect = 6.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 149 SNYVGLNAYQEFKENHAKVKQIL 171
+ +VG N F+ENH K K ++
Sbjct: 19 AGFVGSNLAFYFQENHPKAKVVV 41
>ref|NP_222989.1| 3-DEHYDROQUINATE SYNTHASE [Helicobacter pylori J99]
Length = 343
Score = 22.7 bits (47), Expect = 6.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 8 NETLKKAVPIGVGLIESAINLTR 30
N+TLK +P GVG E A ++ +
Sbjct: 310 NQTLKFILPKGVGAFEIASHIPK 332
>ref|NP_223626.1| 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
[Helicobacter pylori J99]
Length = 491
Score = 22.3 bits (46), Expect = 7.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 53 EMELLSVFESVCGYQIEESFSHLN 76
E + + F++ CG Q +ESF +N
Sbjct: 222 EFIIPACFKNYCGMQDDESFIFIN 245
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.135 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,647
Number of Sequences: 1491
Number of extensions: 7978
Number of successful extensions: 24
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 13
length of query: 180
length of database: 494,079
effective HSP length: 72
effective length of query: 108
effective length of database: 386,727
effective search space: 41766516
effective search space used: 41766516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)