BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646139|ref|NP_208321.1| hypothetical protein
[Helicobacter pylori 26695]
(79 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224137.1| putative [Helicobacter pylori J99] 152 1e-39
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 25 0.38
ref|NP_223705.1| putative chemotaxis protein [Helicobacter ... 24 0.65
ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [He... 24 0.65
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 24 0.65
ref|NP_224200.1| RIBOFLAVIN SYNTHASE ALPHA CHAIN [Helicobac... 23 1.1
ref|NP_224012.1| PREPHENATE DEHYDROGENASE [Helicobacter pyl... 23 1.1
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 23 1.1
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 23 1.4
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223364.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223128.1| putative Short chain dehydrogenase [Helico... 22 1.9
ref|NP_223557.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_222962.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 22 3.2
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 21 4.2
ref|NP_224204.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223787.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 21 5.5
ref|NP_223971.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_223963.1| FUMARASE [Helicobacter pylori J99] 20 7.1
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 20 7.1
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 20 9.3
ref|NP_223617.1| putative [Helicobacter pylori J99] 20 9.3
ref|NP_223376.1| putative [Helicobacter pylori J99] 20 9.3
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 20 9.3
ref|NP_222967.1| putative [Helicobacter pylori J99] 20 9.3
ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99] 20 9.3
>ref|NP_224137.1| putative [Helicobacter pylori J99]
Length = 79
Score = 152 bits (384), Expect = 1e-39
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVE 60
MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVE
Sbjct: 1 MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVE 60
Query: 61 RLKELINALNKIKKGLLVF 79
RLKELINALNKIKKGLLVF
Sbjct: 61 RLKELINALNKIKKGLLVF 79
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 24.6 bits (52), Expect = 0.38
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 2 FEKIRKILAD------IEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPK-GVNEAFFTQ 54
+EK KIL IE + EIE++ +L L + + + ++ P + E F
Sbjct: 193 YEKALKILKSFKNPPAIEFLEKEIEVIPELFILEVDNEMIVRLNDESYPTISLEENRFKD 252
Query: 55 ---LSEEVERLKELINALN 70
L E+++ K+LI+ALN
Sbjct: 253 SDYLKEKLKEAKDLIDALN 271
>ref|NP_223705.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 312
Score = 23.9 bits (50), Expect = 0.65
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 11 DIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEE 58
D ED N++EML K L ++ ++MPK F +L ++
Sbjct: 213 DGEDGLNKLEMLFKKYGDDLRKHLKFIISDVEMPKMDGYHFLFKLQKD 260
>ref|NP_223067.1| HIGH-AFFINITY NICKEL-TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 331
Score = 23.9 bits (50), Expect = 0.65
Identities = 13/32 (40%), Positives = 17/32 (52%)
Query: 48 NEAFFTQLSEEVERLKELINALNKIKKGLLVF 79
NE+ Q +EE+ERL LN+ K L F
Sbjct: 144 NESLSRQQNEEIERLLTSRGLLNRFFKPLFNF 175
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 23.9 bits (50), Expect = 0.65
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 3 EKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFF 52
+++ +I A IE ++ E LK+A+ SL EI + S D+ + VN+ F
Sbjct: 626 KEVEEINASIEALRSVTEGNLKIASDSLEISQEIDKVSNDILEDVNKKQF 675
>ref|NP_224200.1| RIBOFLAVIN SYNTHASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 206
Score = 23.1 bits (48), Expect = 1.1
Identities = 16/67 (23%), Positives = 27/67 (39%)
Query: 1 MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVE 60
MF + +A ++ N I + N LGD I I + + F +LS++ +
Sbjct: 1 MFSGLINQIAKVKSFHNNILSIESNLNPKLGDSIAINGACLTAIESSKTHFSVELSQKTQ 60
Query: 61 RLKELIN 67
L N
Sbjct: 61 NSVALEN 67
>ref|NP_224012.1| PREPHENATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 275
Score = 23.1 bits (48), Expect = 1.1
Identities = 16/58 (27%), Positives = 28/58 (47%)
Query: 9 LADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELI 66
LA+ QN+ EM+L LA D + + S M K + + + E +E+ ++ I
Sbjct: 189 LANSVLKQNDPEMILSLAGGGFRDMSRLSKSSPLMWKDIFKQNRDNVLEAIEKCEKEI 246
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 23.1 bits (48), Expect = 1.1
Identities = 13/47 (27%), Positives = 24/47 (50%)
Query: 31 GDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNKIKKGLL 77
GDF+E K + + E Q+ +++L E A+ +++ GLL
Sbjct: 587 GDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLL 633
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 22.7 bits (47), Expect = 1.4
Identities = 14/55 (25%), Positives = 26/55 (46%)
Query: 17 NEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNK 71
NE+ ++ N++L E + ++ N+A L E V+ ELI L++
Sbjct: 450 NEVNDVISGVNITLEQTTEPNKPAIISVSRDNQAIIDSLKEFVKAYNELIPKLDE 504
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 22.3 bits (46), Expect = 1.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 44 PKGVNEAFFTQLSEEVERLKELINALN 70
PK V E +L + +E E +NA N
Sbjct: 298 PKKVLEILENRLKKSIETTNETLNAFN 324
>ref|NP_223364.1| putative [Helicobacter pylori J99]
Length = 308
Score = 22.3 bits (46), Expect = 1.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 47 VNEAFFTQLSEEVERLKELINALNKIKKGLL 77
V +A +++ E+E LKE + +K+ +L
Sbjct: 203 VFQAVRIEVNSELEELKEFLQCARNLKEAIL 233
>ref|NP_223128.1| putative Short chain dehydrogenase [Helicobacter pylori J99]
Length = 262
Score = 22.3 bits (46), Expect = 1.9
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 14 DSQNEIEMLLKLANLSLGDF 33
+S+N +E ++K A + LG+F
Sbjct: 168 NSKNAVETMVKYAAVDLGEF 187
>ref|NP_223557.1| putative [Helicobacter pylori J99]
Length = 99
Score = 21.9 bits (45), Expect = 2.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 35 EIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNKIKK 74
E+ ++MPKG + Q+S ++ L+ + L+ KK
Sbjct: 60 EVGDEKIEMPKGALISLEAQVSHRLDALENSVIRLSLSKK 99
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 21.9 bits (45), Expect = 2.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 49 EAFFTQLSEEVERLKELI 66
EAF T +EE +RLK LI
Sbjct: 88 EAFKTLQTEEKKRLKNLI 105
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 21.6 bits (44), Expect = 3.2
Identities = 9/19 (47%), Positives = 12/19 (62%)
Query: 54 QLSEEVERLKELINALNKI 72
QLSE E+L L+N N +
Sbjct: 45 QLSENYEKLNNLLNNYNTL 63
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 21.2 bits (43), Expect = 4.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 4 KIRKILADIEDSQNEIEMLLK 24
K+ + D +D+QN ++ LLK
Sbjct: 183 KVFGVSGDFDDAQNALKNLLK 203
>ref|NP_224204.1| putative [Helicobacter pylori J99]
Length = 140
Score = 20.8 bits (42), Expect = 5.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 21 MLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNK 71
ML KL +SL F+ R +G + +LS+ + KE++ A+NK
Sbjct: 1 MLKKLLLISL--FLGFLRA-----EGEHYEIIAELSKAFLKAKEVLTAINK 44
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 20.8 bits (42), Expect = 5.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 40 SMDMPKGVNEAFFTQLSEEVERLKELI 66
S D K + E + + E +ERL E+I
Sbjct: 310 STDTIKKMKEDYTNKTDEALERLDEII 336
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 20.8 bits (42), Expect = 5.5
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 20 EMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNKIKKGLLVF 79
EML LAN++ + IE S D + + F + ++R + A +KK + +F
Sbjct: 366 EMLDLLANINEKNAIEYLHDSFDHTESLFTLFDLGYIDLIDRSNTEVLAHLIVKKAVQLF 425
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 20.4 bits (41), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 59 VERLKELINALNKIKKGLLV 78
+ER KEL NA N +K L+
Sbjct: 276 IERDKELKNAKNNKEKHALI 295
>ref|NP_223963.1| FUMARASE [Helicobacter pylori J99]
Length = 463
Score = 20.4 bits (41), Expect = 7.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 63 KELINALNKIKKGLLV 78
KELI A K+K+ L V
Sbjct: 41 KELIGAFAKLKRSLAV 56
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 20.4 bits (41), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 49 EAFFTQLSEEVERLKELINA 68
EAF QL E + LKE + A
Sbjct: 106 EAFAKQLQNEKQILKEQLQA 125
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 20.0 bits (40), Expect = 9.3
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 17 NEIEMLLKLANLSLGDFI 34
NE+ M+L L L+ G+F+
Sbjct: 806 NEMSMILGLFMLTAGNFL 823
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 20.0 bits (40), Expect = 9.3
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 55 LSEEVERLKELINALNKIKKGL 76
+ EEV++ KE + N+ K+G+
Sbjct: 132 VEEEVKKQKEKQSLSNRAKEGI 153
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 20.0 bits (40), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 35 EIKRGSMDMPKGVNEAFFTQLSE 57
E+K+ MP+ +AF QL E
Sbjct: 49 ELKKRMEKMPEDKRKAFHKQLHE 71
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 20.0 bits (40), Expect = 9.3
Identities = 7/29 (24%), Positives = 18/29 (61%)
Query: 44 PKGVNEAFFTQLSEEVERLKELINALNKI 72
PK V+ + + ++++ +++ ALNK+
Sbjct: 143 PKAVSHSQIEKAKQKLQEIQKSREALNKL 171
>ref|NP_222967.1| putative [Helicobacter pylori J99]
Length = 172
Score = 20.0 bits (40), Expect = 9.3
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 56 SEEVERLKELINALNKIKKGLLV 78
+++ R K + L+K+K+ LLV
Sbjct: 94 NDKTLRAKRINGELDKVKRALLV 116
>ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99]
Length = 422
Score = 20.0 bits (40), Expect = 9.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 19 IEMLLKLANLSLGDFIEIKRGSMDM 43
++ ++ LSL D +EIK+ D+
Sbjct: 136 VKRIVCARELSLNDAVEIKKALPDL 160
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.140 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,876
Number of Sequences: 1491
Number of extensions: 3115
Number of successful extensions: 28
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of query: 79
length of database: 494,079
effective HSP length: 55
effective length of query: 24
effective length of database: 412,074
effective search space: 9889776
effective search space used: 9889776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)