BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644784|ref|NP_206954.1| hypothetical protein
[Helicobacter pylori 26695]
(91 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222864.1| putative [Helicobacter pylori J99] 176 7e-47
ref|NP_223353.1| short-chain fatty acids transporter [Helic... 28 0.033
ref|NP_224090.1| putative [Helicobacter pylori J99] 24 0.47
ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 23 0.81
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 23 0.81
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 23 0.81
ref|NP_223994.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_222772.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223654.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223055.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 22 1.8
ref|NP_223874.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223965.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223963.1| FUMARASE [Helicobacter pylori J99] 22 2.3
ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter... 22 2.3
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 22 3.1
ref|NP_222774.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223037.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 21 5.2
ref|NP_223186.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99] 21 5.2
ref|NP_223792.1| TRNA (GUANINE-N1)-METHYLTRANSFERASE [Helic... 20 6.8
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 20 6.8
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 20 8.9
ref|NP_223980.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_223610.1| putative [Helicobacter pylori J99] 20 8.9
ref|NP_223546.1| putative [Helicobacter pylori J99] 20 8.9
>ref|NP_222864.1| putative [Helicobacter pylori J99]
Length = 91
Score = 176 bits (446), Expect = 7e-47
Identities = 88/91 (96%), Positives = 90/91 (98%)
Query: 1 MASGLFENDGIKDNKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKH 60
MASGLFEND IK+NKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKH
Sbjct: 1 MASGLFENDEIKNNKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKH 60
Query: 61 ERLQQEITELQSKNVRLQKRLFELKELRPRD 91
ERLQQEITELQSKNVRLQKRLFEL+ELRPRD
Sbjct: 61 ERLQQEITELQSKNVRLQKRLFELRELRPRD 91
>ref|NP_223353.1| short-chain fatty acids transporter [Helicobacter pylori J99]
Length = 454
Score = 28.1 bits (61), Expect = 0.033
Identities = 17/43 (39%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Query: 12 KDNKARDFFYSHSSLIVFFLLLLGFGYYLGKLLF--GGSSLEV 52
+ +K F +S+L+ + L+ LGFG YLG F GG SL +
Sbjct: 240 QQDKTIAHFLENSALLSYLLVFLGFG-YLGIYFFKGGGISLNI 281
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 24.3 bits (51), Expect = 0.47
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 2/18 (11%)
Query: 2 ASGLFEN--DGIKDNKAR 17
AS L++N DG+KDN+AR
Sbjct: 732 ASALYQNLIDGLKDNEAR 749
>ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 526
Score = 23.5 bits (49), Expect = 0.81
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 26 LIVF-FLLLLGFGYYLGKLL-FGGSSLEVYLDLR 57
LIVF F LLLG G+ + LL G + + LDLR
Sbjct: 8 LIVFIFALLLGVGFSVPSLLETKGPKITLGLDLR 41
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 23.5 bits (49), Expect = 0.81
Identities = 11/19 (57%), Positives = 13/19 (67%)
Query: 22 SHSSLIVFFLLLLGFGYYL 40
S S LI F L +GFGY+L
Sbjct: 16 SVSFLISFALYAIGFGYFL 34
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 23.5 bits (49), Expect = 0.81
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 20 FYSHSSLIVFFLLLLGFGYYLGK-LLFGGSSLEVYLDLRDKHERLQ 64
F+ H S ++ L +GFG+++ + GS+L++ L + H LQ
Sbjct: 251 FFPHKSELIHKLNDVGFGFFVPLFFIHVGSTLDLKLVFLNPHLILQ 296
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 23.1 bits (48), Expect = 1.1
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 5/55 (9%)
Query: 36 FGYYLGKLLFGGSSLEVYLDLRDKH-----ERLQQEITELQSKNVRLQKRLFELK 85
F LG +L L YL L++K RL++ + E +N KRL EL+
Sbjct: 8 FMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYLYSKRLRELE 62
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 23.1 bits (48), Expect = 1.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 55 DLRDKHERLQQEITELQSK 73
DL +K++RL E TEL +K
Sbjct: 174 DLTEKNQRLTTEKTELNNK 192
Score = 22.7 bits (47), Expect = 1.4
Identities = 11/30 (36%), Positives = 18/30 (59%)
Query: 55 DLRDKHERLQQEITELQSKNVRLQKRLFEL 84
DL +++ +L+ + T+L KN RL EL
Sbjct: 160 DLTNENTKLKTDKTDLTEKNQRLTTEKTEL 189
Score = 20.0 bits (40), Expect = 8.9
Identities = 11/30 (36%), Positives = 15/30 (49%)
Query: 56 LRDKHERLQQEITELQSKNVRLQKRLFELK 85
L + ERL E L + QK++ ELK
Sbjct: 119 LTTEKERLATEKENLTKEKTESQKQVNELK 148
>ref|NP_223654.1| putative [Helicobacter pylori J99]
Length = 421
Score = 22.7 bits (47), Expect = 1.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 26 LIVFFLLLLGFGYYLGKLL 44
+I+FFL++LG +LG LL
Sbjct: 163 IIMFFLVILGELLFLGLLL 181
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 22.7 bits (47), Expect = 1.4
Identities = 22/83 (26%), Positives = 32/83 (38%)
Query: 6 FENDGIKDNKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKHERLQQ 65
++ + IK +DF +S SSL F F Y+ K E + L +
Sbjct: 515 YQEEEIKAAIPKDFSFSASSLNAFLTCKRRFYYHYIKRFKETPKDESNSAVGSLIHELLK 574
Query: 66 EITELQSKNVRLQKRLFELKELR 88
E E L++RL L E R
Sbjct: 575 EAYEKDKNPHALEERLIWLSETR 597
>ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 22.3 bits (46), Expect = 1.8
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 27 IVFFLLLLGFGYYLGKLLFGGSSL 50
I+ FLL++ F Y+ ++F +
Sbjct: 302 ILMFLLIIFFAYFYSSIVFNSKDI 325
>ref|NP_223874.1| putative [Helicobacter pylori J99]
Length = 415
Score = 22.3 bits (46), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 1 MASGLF--ENDGIKDNKARDFFYS 22
+A GL E I N+A+DFFYS
Sbjct: 41 LALGLLMSEEISISYNEAKDFFYS 64
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 21.9 bits (45), Expect = 2.3
Identities = 17/55 (30%), Positives = 26/55 (46%)
Query: 25 SLIVFFLLLLGFGYYLGKLLFGGSSLEVYLDLRDKHERLQQEITELQSKNVRLQK 79
S+ + LLL F L K L + + YL K + LQ++I L S+ + K
Sbjct: 14 SIRLLTALLLLFSLGLAKDLEIQTFVAKYLSKNQKIQALQEQIDALDSQEKVVSK 68
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 54 LDLRDKHERLQQEITELQSKNVRLQKRLFELKELR 88
L L K + +++T+ + N+ QK++ ELK+ +
Sbjct: 99 LGLSQKVDLNGKKLTQSKMINLEKQKKILELKKTK 133
>ref|NP_223963.1| FUMARASE [Helicobacter pylori J99]
Length = 463
Score = 21.9 bits (45), Expect = 2.3
Identities = 11/29 (37%), Positives = 16/29 (54%)
Query: 10 GIKDNKARDFFYSHSSLIVFFLLLLGFGY 38
GI+ NK + +Y H SL++ L GY
Sbjct: 389 GIEPNKEKIDYYLHHSLMLVTALNPHVGY 417
>ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter pylori J99]
Length = 437
Score = 21.9 bits (45), Expect = 2.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 34 LGFGYYLGKLLFGGSSLEVYLDLR 57
+G Y + LFGGS+ + L+ +
Sbjct: 381 VGLAYAIANALFGGSASYIALEFK 404
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 21.6 bits (44), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 49 SLEVYLDLRDKHERLQQEITELQSKNV 75
SL+ +LRDK + L+ + EL NV
Sbjct: 195 SLKHANELRDKRDELEFHLRELLGGNV 221
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 21.6 bits (44), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 55 DLRDKHERLQQEITELQSKNVRLQK 79
+L + ERL++E TEL K L K
Sbjct: 136 ELTTEKERLKRENTELTHKITELTK 160
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 56 LRDKHERLQQEITELQSKNVRLQKRLFELKELRPR 90
L ++ + L+QE LQ + L+KR L++ R
Sbjct: 179 LTNERDSLEQERARLQDAHGFLEKRCTNLEKENQR 213
>ref|NP_223037.1| putative [Helicobacter pylori J99]
Length = 251
Score = 21.2 bits (43), Expect = 4.0
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 10 GIKDNKARDF 19
G+K NKA+DF
Sbjct: 2 GVKSNKAKDF 11
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 20.8 bits (42), Expect = 5.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 9 DGIKDNK--ARDFFYSHSSLIVFFLLLLGFGYYLGK 42
+ +KD+ A F + S +F L LG+ Y+LGK
Sbjct: 78 NAVKDSNKIANRFAGNGGSGGIFNELSLGYKYFLGK 113
>ref|NP_223186.1| putative [Helicobacter pylori J99]
Length = 283
Score = 20.8 bits (42), Expect = 5.2
Identities = 12/51 (23%), Positives = 25/51 (48%)
Query: 1 MASGLFENDGIKDNKARDFFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSLE 51
+A E G+K + + FY+ +++ + LLG LG++ G ++
Sbjct: 95 LAKMYLEGKGVKVDYKKAQFYAQNAIKGYGSGLLGGALILGRMQAEGLGMK 145
>ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99]
Length = 301
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 5 LFENDGIKDNKARDFF 20
LFE D + D K RD +
Sbjct: 177 LFEKDLMSDEKMRDIY 192
>ref|NP_223792.1| TRNA (GUANINE-N1)-METHYLTRANSFERASE [Helicobacter pylori J99]
Length = 229
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 77 LQKRLFELKELRPRD 91
L+K LFEL+ L RD
Sbjct: 26 LEKNLFELEVLNLRD 40
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 59 KHERLQQEITELQSKNVR 76
K E+L++ TEL KN++
Sbjct: 498 KEEKLKELKTELDKKNLK 515
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 20.0 bits (40), Expect = 8.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 44 LFGGSSLEVYLDLRDKHERLQQEITELQSK 73
L GS++E + +++ E ITE Q K
Sbjct: 142 LLNGSTIEGFRGIKEVLESTMNLITENQRK 171
>ref|NP_223980.1| putative [Helicobacter pylori J99]
Length = 242
Score = 20.0 bits (40), Expect = 8.9
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 19 FFYSHSSLIVFFLLLLGFGYYLGKLLFGGSSL 50
FF SH +F + + F + LL GG+ L
Sbjct: 73 FFISHLQKPLFAIAGMSFSWRDVVLLLGGAFL 104
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 20.0 bits (40), Expect = 8.9
Identities = 10/38 (26%), Positives = 21/38 (54%)
Query: 51 EVYLDLRDKHERLQQEITELQSKNVRLQKRLFELKELR 88
E L L+ + + +Q + + +K +QK++ E+K R
Sbjct: 51 EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSER 88
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 20.0 bits (40), Expect = 8.9
Identities = 6/25 (24%), Positives = 19/25 (76%)
Query: 62 RLQQEITELQSKNVRLQKRLFELKE 86
+L++++ + QSK + ++ ++ E+K+
Sbjct: 17 KLEKQLAKYQSKVLEIKTQMKEIKK 41
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.146 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,487
Number of Sequences: 1491
Number of extensions: 4253
Number of successful extensions: 31
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of query: 91
length of database: 494,079
effective HSP length: 67
effective length of query: 24
effective length of database: 394,182
effective search space: 9460368
effective search space used: 9460368
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 40 (20.0 bits)