BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646142|ref|NP_208324.1| IS605 transposase (tnpB)
[Helicobacter pylori 26695]
(427 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 129 2e-31
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 27 1.3
ref|NP_223830.1| putative [Helicobacter pylori J99] 26 1.7
ref|NP_224044.1| putative [Helicobacter pylori J99] 26 2.2
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 25 2.9
ref|NP_223545.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 25 2.9
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 25 5.0
ref|NP_224041.1| putative [Helicobacter pylori J99] 24 6.5
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 24 6.5
ref|NP_222988.1| putative [Helicobacter pylori J99] 24 6.5
ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobac... 24 6.5
ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobact... 24 8.5
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 129 bits (323), Expect = 2e-31
Identities = 118/450 (26%), Positives = 193/450 (42%), Gaps = 78/450 (17%)
Query: 6 KFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGI----KETYFTMQKVLTQIKR 61
KFR+YP +Q++ + F YN L+ Q+QY K KE +K +++ +
Sbjct: 8 KFRLYPTKEQQDKLQHCFFVYNQAYNIGLNLLQEQYEKNKDLPPKER---TRKKSSELDK 64
Query: 62 QEKYHYLNECNSQSLQMALRQLVSAY----DNFFSKRARYPKFKSKKNAKQSFAIPQN-- 115
K+H S S +A + ++ D F K +PKFK+ K+AKQSF+
Sbjct: 65 AIKHHLNARGLSFSSVIAQQSRMNVERALKDAFKVKNRGFPKFKNSKSAKQSFSWNNQGF 124
Query: 116 -IETKTETQTIALPKFKEGIKAKLHRDLPKDSVIKQAFISCIADQYFCSLSYETKEPIPK 174
I+ E + K + +HRD P S +KQ ISC +YF S S E ++ I
Sbjct: 125 FIKESDEERFKIFTLMKMPLMMCMHRDFPPHSKVKQIVISCSHRKYFVSFSVEYEQDITP 184
Query: 175 PTIIKKAVGLDMGLRTLIVT-------------------SDKIG---------------Y 200
K VGLD+ + + + + +G Y
Sbjct: 185 IKNPKNGVGLDLNILDIACSCGVNNHKKLTDFKRYSTDMKELLGIEIDEELDTKRLIPTY 244
Query: 201 PHIRFYQKLEKKLTKAQRRLSKKVKDSNNRK--------KQAKKVSRLHLACSNTRDDYL 252
+ +K KK + QR+ S++V S K K KK++++ S+ + D
Sbjct: 245 SKLYSLKKHSKKFKRLQRKQSRRVLKSKQNKTKLGGNFYKTQKKLNQVFDKSSHQKTDRY 304
Query: 253 HKISNEITNQYDLIGVETLNVKALMRTYHSK----------SLANASWGKFLTMLEYKAQ 302
HKI++E++ Q++LI VE L VK + + K S+ N S+ + ++ L+YK Q
Sbjct: 305 HKITSELSKQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQ 364
Query: 303 RKGKTLLSIDRFFPSSQLCSYCGVNTGKKHESITKFTCPHCKTTHHRDYNASVNIRNYAL 362
GK L+ + + +S+ C CG K + ++ C C HRD NA+ NI + L
Sbjct: 365 HNGKLLVKVPPQY-TSKTCHCCGNINHKLKLNHRQYWCLECGYREHRDINAANNILSKGL 423
Query: 363 GMLDDRHKVKTDKARVGIIRSDYTHHTNEC 392
+ VG I +D+ + C
Sbjct: 424 SLFG-----------VGNIHADFKEQSLSC 442
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 26.6 bits (57), Expect = 1.3
Identities = 21/79 (26%), Positives = 38/79 (47%), Gaps = 7/79 (8%)
Query: 218 RRLSKKVKDSNNRKKQAKKVSRLHLACSNTRD---DYLHKISNE---ITNQYDLIGVETL 271
+ LSK KDS ++ A+K L +TR+ HK S E + + + +G +
Sbjct: 122 KELSKNAKDSAQKQALAQKTEALTHNIKDTRERLTTLQHKASEELKSVIKEVNSLGSQIA 181
Query: 272 NV-KALMRTYHSKSLANAS 289
+ K + ++KSL +A+
Sbjct: 182 EINKRIKEVENNKSLKHAN 200
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 26.2 bits (56), Expect = 1.7
Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 210 EKKLTKAQRRLSKKVKDSNNRK--KQAKKVSRLHLACSNTRDDYLHKISNEITNQYDLIG 267
EK+ T+ +++ + ++ +N K ++ +K + +NT+ D ++K ++
Sbjct: 155 EKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFF 214
Query: 268 VETLNVKA 275
++ L +KA
Sbjct: 215 IKKLGIKA 222
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 25.8 bits (55), Expect = 2.2
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 225 KDSNNRKKQAKKVSRLHLACSNTRDDYLHKISNEITNQYDLIGVETLNVKALMRTYHSKS 284
K + K V+R +L C +D+ LHK +NE+ Q+ + + LN +M ++ +
Sbjct: 395 KTPSGTGKNKDLVARGNLICKKYKDE-LHKANNELFAQFFMRIYKELN-GCIMASFSTLK 452
Query: 285 LANAS 289
N+S
Sbjct: 453 YLNSS 457
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 25.4 bits (54), Expect = 2.9
Identities = 15/64 (23%), Positives = 21/64 (32%)
Query: 285 LANASWGKFLTMLEYKAQRKGKTLLSIDRFFPSSQLCSYCGVNTGKKHESITKFTCPHCK 344
LA + F+ Y R G ++ + RF + CSY G CP
Sbjct: 676 LAATTGNVFILTASYTIPRTGLSITWLSRFVTNLSYCSYSPYRNGPTDIDRRPSNCPKTP 735
Query: 345 TTHH 348
H
Sbjct: 736 GIFH 739
>ref|NP_223545.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 64
Score = 25.4 bits (54), Expect = 2.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 276 LMRTYHSKSLANASWGKFLTMLEYKAQRKGKTLLSIDRFFPSSQ 319
L R +H KS+ + WGK L Y A G T L + + + Q
Sbjct: 17 LTRQHHFKSVEASLWGKHLWSPSYFAGSCGGTPLEMIKQYIQEQ 60
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 24.6 bits (52), Expect = 5.0
Identities = 21/68 (30%), Positives = 34/68 (49%), Gaps = 8/68 (11%)
Query: 200 YPHIRFYQKLEKKLT-----KAQRRLSKKVKDSNNRKKQAKKVSRLHLACSNTRDDYLHK 254
YP ++ + KK T KAQ L V + ++Q KK SRL L+ ++Y +
Sbjct: 151 YPQVKT-SSIFKKTTATTKDKAQALLQMGVFSLD--EEQNKKASRLALSYKQAIEEYSNN 207
Query: 255 ISNEITNQ 262
ISN ++ +
Sbjct: 208 ISNLLSRK 215
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 24.3 bits (51), Expect = 6.5
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 327 NTGKKHESITKFTCPHCK---------TTHHRDYNASVNIRNYALGMLDD 367
N K ES T H K HH+ +AS RNYA LD+
Sbjct: 42 NAQKNAESSNHETLSHHKKEHRPNKKPNNHHKPKHASQKTRNYAKEELDN 91
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 24.3 bits (51), Expect = 6.5
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 31 NYFLDYRQKQYAKGIKETYFTMQKVLTQIKRQEKYHYLNECNSQSLQMAL 80
N ++ + Y +G+ Y ++QK+L+ ++ + KY + Q LQ AL
Sbjct: 433 NLYVKIKNDPYKEGMLCGYESVQKLLSPLRDKLKY------DKQKLQKAL 476
>ref|NP_222988.1| putative [Helicobacter pylori J99]
Length = 478
Score = 24.3 bits (51), Expect = 6.5
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 35 DYRQKQYAKGIKETYFTMQKVLTQIKR-QEKYHYLNECNSQSLQMALRQLVSAYDNFFSK 93
D+++++ I +T+F +V+ +KR EK NE N + + + + F S+
Sbjct: 78 DFKEQRIIHKIIQTHFKRMRVVLSVKRDSEKTLENNEENKDEKLILIDEFEVLANKFISR 137
Query: 94 RARYP 98
P
Sbjct: 138 LPNIP 142
>ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 24.3 bits (51), Expect = 6.5
Identities = 26/120 (21%), Positives = 51/120 (41%), Gaps = 21/120 (17%)
Query: 252 LHKISNEITNQYDLIGVETLNVKALMRTYHSKSLANASWGKFLTMLE-YKAQRKGKTLLS 310
L ++ EI ++ +L + T+N +++T H ++ + + E ++ + LLS
Sbjct: 369 LLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPSQLVLKLLS 428
Query: 311 IDRFFPSSQLCSYCGVN-------------TGKKHESITKFTCPHC-KTTHHRDYNASVN 356
+ F +S++ G+N T K T+ H K +HHRD + N
Sbjct: 429 LQ--FETSKI----GLNQQEIDAIQNPKEKTPKPPNKKTQHEPAHSFKKSHHRDRHPKTN 482
>ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 393
Score = 23.9 bits (50), Expect = 8.5
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 355 VNIRNYALGMLDDRHKVKTDKARVGIIRSDYTH 387
+ + LG+ ++H +K RVGI+ + T+
Sbjct: 251 IGVEPAGLGLETNKHGATLNKGRVGILHGNKTY 283
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,523
Number of Sequences: 1491
Number of extensions: 18921
Number of successful extensions: 75
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 13
length of query: 427
length of database: 494,079
effective HSP length: 80
effective length of query: 347
effective length of database: 374,799
effective search space: 130055253
effective search space used: 130055253
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)