BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646145|ref|NP_208328.1| hypothetical protein
[Helicobacter pylori 26695]
(228 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 29 0.12
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 28 0.16
ref|NP_223038.1| putative [Helicobacter pylori J99] 28 0.26
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 27 0.45
ref|NP_223645.1| putative [Helicobacter pylori J99] 27 0.45
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 27 0.45
ref|NP_223331.1| putative [Helicobacter pylori J99] 27 0.59
ref|NP_224004.1| putative [Helicobacter pylori J99] 26 0.77
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 26 0.77
ref|NP_223773.1| putative [Helicobacter pylori J99] 26 0.77
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 26 0.77
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 25 1.3
ref|NP_223856.1| putative role in outermembrane permeabilit... 25 1.3
ref|NP_223205.1| cag island protein [Helicobacter pylori J99] 25 1.3
ref|NP_222733.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_224093.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_223731.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_223546.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [H... 25 2.2
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 25 2.2
ref|NP_223506.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_222886.1| putative [Helicobacter pylori J99] 24 3.8
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 23 5.0
ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter... 23 6.5
ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pyl... 23 6.5
ref|NP_223387.1| putative [Helicobacter pylori J99] 23 6.5
ref|NP_222912.1| putative [Helicobacter pylori J99] 23 6.5
ref|NP_223985.1| 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFE... 23 8.5
ref|NP_223465.1| putative [Helicobacter pylori J99] 23 8.5
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 28.9 bits (63), Expect = 0.12
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 114 IEIKFSKNDKGEKNLQTSRPMWNSNLPKPNAIYVYGVANANITFFKGSDILSYETREVLL 173
I+ ++ + DK E +T +P P + + +++ FKG+DI ET E+LL
Sbjct: 251 IKKEWQEKDKQETK-KTKKPSKPKATPTAKNNKSHKIDFSDVRDFKGNDIYDDETDEILL 309
Query: 174 KYFDILDKDERSLKNALKD 192
FD+ ++D + + K+
Sbjct: 310 --FDLHEQDNLNKEEEEKE 326
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 28.5 bits (62), Expect = 0.16
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 20 STGEQFENQFRNELKKHFSEINGDLT------EELSHIEEKPNKEIKTTFNQLKKQVLEK 73
S GEQ + +KHF++ + E+L I EK N+EI+ QL + +K
Sbjct: 166 SKGEQAYSDLSFLSRKHFNDFIKRVDTLSLSDEDLERIREKKNQEIEDCLMQLNNNIYDK 225
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 27.7 bits (60), Expect = 0.26
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 44 LTEELSHIEEKPNKEIKTTFNQLKKQVLEKNHPHTLKNPFSNLTSHF 90
L +E + + +E+K F +K++LE+ H LK T HF
Sbjct: 53 LIKENMQLSDFNEEELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHF 99
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 26.9 bits (58), Expect = 0.45
Identities = 18/65 (27%), Positives = 30/65 (45%), Gaps = 2/65 (3%)
Query: 19 SSTGEQFENQFRNELKK--HFSEINGDLTEELSHIEEKPNKEIKTTFNQLKKQVLEKNHP 76
S T EN+ +KK + N + +E S +E P KE+K + K+ ++ N
Sbjct: 109 SDTNNGKENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKT 168
Query: 77 HTLKN 81
T +N
Sbjct: 169 PTTEN 173
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 26.9 bits (58), Expect = 0.45
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 41 NGDLTEELSHIEEKPNKEIKTTFNQLKKQVLEKNHPHTLKNPF-SNLTSHFL--YQPFGS 97
N ++EEL+H K++K Q+ +Q EK +K F SNL + F+ + +
Sbjct: 2120 NASMSEELTH------KKLKEQNKQIAEQNKEK--LDAIKKQFASNLNTLFVNEEEDYKL 2171
Query: 98 QNYPDFLVFIFDYVVGIEIKFSKNDKGEKNLQTSRPMW 135
Y F+V Y +++FS + K N+ S +W
Sbjct: 2172 LEYKGFVVNA--YKTKYQVEFSLSPKDIPNIAYSLAIW 2207
Score = 22.7 bits (47), Expect = 8.5
Identities = 22/80 (27%), Positives = 40/80 (49%), Gaps = 12/80 (15%)
Query: 24 QFENQFRNELK-KHFSEINGD-LTE-ELSHIEEKPN-------KEIKTTFNQLKKQ--VL 71
Q+ +F EL H+ + GD +T+ +LS+++E E+ N+L + +
Sbjct: 1173 QYLEEFLMELSANHYEKQYGDKMTDYQLSNLKEDIKIEHLSGAYEVFVRNNELNELYGIR 1232
Query: 72 EKNHPHTLKNPFSNLTSHFL 91
K+ PH+ K PF +L + L
Sbjct: 1233 HKDKPHSYKVPFESLLNKVL 1252
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 26.9 bits (58), Expect = 0.45
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 25 FENQFRNELK--KHFSEINGDLTEELSHIEEKPNKEIKTTFNQLKKQVLEKNHPHTLKNP 82
F ++ N +K + + G +E+ ++EK ++ K +LE+ H T
Sbjct: 354 FRVEYHNTIKAKEGIKDKEGIKDKEVRAVDEKNALLDSRRIKEIAKCILERFHQATKNKK 413
Query: 83 FSNLTS-------HFLYQPFGSQNYPDFLVFIFDYVVGIEIKFSKNDKGE 125
F+++ + YQ F + + + IF Y EI+ +++ E
Sbjct: 414 FNSILACSGIEALKKYYQAFKEEKHDLKIATIFSYSANEEIEALEDENNE 463
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 26.6 bits (57), Expect = 0.59
Identities = 21/68 (30%), Positives = 31/68 (44%), Gaps = 19/68 (27%)
Query: 28 QFRNELKKHFSEINGDLTEELSHIEEK-----------------PNKEIKTTFNQLKKQV 70
Q R+ K+F I LT+ L ++EEK NKEIKTT + +V
Sbjct: 517 QNRDSSLKNFKNIA--LTDSLDYLEEKNDKGVIPGFEYLFEDLKENKEIKTTMEKQNIRV 574
Query: 71 LEKNHPHT 78
+ N P++
Sbjct: 575 IIGNPPYS 582
>ref|NP_224004.1| putative [Helicobacter pylori J99]
Length = 248
Score = 26.2 bits (56), Expect = 0.77
Identities = 11/45 (24%), Positives = 23/45 (50%)
Query: 152 NANITFFKGSDILSYETREVLLKYFDILDKDERSLKNALKDLENP 196
N FF+ +I ++ ++L+ + + D + N++ LENP
Sbjct: 47 NVQAYFFQAQNIKEFQKERLILEALKLENADLKERLNSIYPLENP 91
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 26.2 bits (56), Expect = 0.77
Identities = 37/164 (22%), Positives = 63/164 (37%), Gaps = 19/164 (11%)
Query: 64 NQLKKQVLEKNHPHTLKNPFSNLTSHFLYQPFGSQNYPDFLVFIFDYVVGIEIKFSKNDK 123
N K V+ N T KNP T+ + Y P G+ NY + + I++K S +
Sbjct: 208 NSSKNMVVNINQTFT-KNP----TTEYTY-PDGNGNY-----YSGGSSIPIQLKISSVND 256
Query: 124 GEKNLQTSRPMWN---SNLPKPNA---IYVYGVANANITFFKGSDILSYETREVLLKYFD 177
E LQ + + N + P N + +G N+ G + E++
Sbjct: 257 AENLLQQAATIINVLTTQNPHVNGGGGAWGFGGKTGNVMDIFGDSFNAIN--EMIKNAQA 314
Query: 178 ILDKDERSLKNALKDLENPFGFAPYIRKAYEHKRNFLTTTRLKA 221
+L+K ++ N + P F PY K + + L +A
Sbjct: 315 VLEKTQQLNANENTQITQPDNFNPYTSKDTQFAQEMLNRANAQA 358
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 26.2 bits (56), Expect = 0.77
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 3 EKVFQEITNKRKFFASSSTGEQFENQFRNELKKHFSEINGDLTEELSHIEEKPNKEIKTT 62
EK+ ++ NK+ A E ++ +NE + +E GD E +E+P + ++
Sbjct: 35 EKILLDL-NKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDI 93
Query: 63 FNQL 66
F+ L
Sbjct: 94 FSSL 97
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 26.2 bits (56), Expect = 0.77
Identities = 37/164 (22%), Positives = 63/164 (37%), Gaps = 19/164 (11%)
Query: 64 NQLKKQVLEKNHPHTLKNPFSNLTSHFLYQPFGSQNYPDFLVFIFDYVVGIEIKFSKNDK 123
N K V+ N T KNP T+ + Y P G+ NY + + I++K S +
Sbjct: 208 NSSKNMVVNINQTFT-KNP----TTEYTY-PDGNGNY-----YSGGSSIPIQLKISSVND 256
Query: 124 GEKNLQTSRPMWN---SNLPKPNA---IYVYGVANANITFFKGSDILSYETREVLLKYFD 177
E LQ + + N + P N + +G N+ G + E++
Sbjct: 257 AENLLQQAATIINVLTTQNPHVNGGGGAWGFGGKTGNVMDIFGDSFNAIN--EMIKNAQA 314
Query: 178 ILDKDERSLKNALKDLENPFGFAPYIRKAYEHKRNFLTTTRLKA 221
+L+K ++ N + P F PY K + + L +A
Sbjct: 315 VLEKTQQLNANENTQITQPDNFNPYTSKDTQFAQEMLNRANAQA 358
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 25.4 bits (54), Expect = 1.3
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 66 LKKQVLEKNHPHTLKNPFSNLTSHFLYQPFGSQNYPDFLVFIFDYVV---GIEIKFSKND 122
+K+ VLE H + FSN S+F Y L DY+V G+ +F +
Sbjct: 93 VKESVLENAHQQLQSHAFSNACSYFEYATL----LAVMLAKDCDYLVLEAGLGGEFDSTN 148
Query: 123 KGEKNLQTSRPM 134
EK L P+
Sbjct: 149 ALEKTLSVFTPI 160
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 25.4 bits (54), Expect = 1.3
Identities = 28/119 (23%), Positives = 50/119 (41%), Gaps = 20/119 (16%)
Query: 76 PHTLKNPFSNLTSHFLYQPFGSQNYPDFLVF---------IFDYVVGIEIKFSKN----- 121
P+ + + T+ FLY FG+ N F+ +D +I++ +
Sbjct: 199 PYIFMSTSNKRTTGFLYPEFGTSNLDGFIYLQPFYLAPKNSWDMTFTPQIRYKRGFGLNF 258
Query: 122 DKGEKNLQTSRPMWNSNLPKPNAIYV--YGVANANITFFKGSDILSYETREVLLKYFDI 178
+ N + R ++N+ + YV Y + N NI G + LS +R+ L KYF +
Sbjct: 259 EARYINSKDDRFLFNARYFRNYTQYVKRYDLRNQNI---YGFEFLS-SSRDTLQKYFHL 313
>ref|NP_223205.1| cag island protein [Helicobacter pylori J99]
Length = 237
Score = 25.4 bits (54), Expect = 1.3
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 126 KNLQTSRPMWNSNLPKPNAIY------VYGVANANITFFKGSDILSYETREVLLKYFDIL 179
+ L+TS + SN+ ++ V + N N F KG L +V L Y + L
Sbjct: 154 ERLETSLKAYQSNIGGTASLITASQTLVESLKNKN--FIKGIKKLMLAHNKVFLNYLEEL 211
Query: 180 DKDERSLKNA 189
D ERSL+ +
Sbjct: 212 DALERSLEQS 221
>ref|NP_222733.1| putative [Helicobacter pylori J99]
Length = 350
Score = 25.0 bits (53), Expect = 1.7
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 27 NQFRNELKKHFSEINGDLTEELSHIEEKPNKEIKTTFNQLKKQVLE 72
N FRN K E++ D + ++P + K NQ++K V E
Sbjct: 94 NMFRNAFYKML-ELDADFVLSGEVLGQRPKSQRKEALNQVRKLVRE 138
>ref|NP_224093.1| putative [Helicobacter pylori J99]
Length = 86
Score = 24.6 bits (52), Expect = 2.2
Identities = 21/80 (26%), Positives = 32/80 (39%), Gaps = 2/80 (2%)
Query: 44 LTEELSHIEEKPNKEIKTTFNQLKKQVLEKNHPHTLKNPFSNLTSHFLYQPFGSQNYPDF 103
+ +EL E+ P K K N KK E H H+L+ L L G Y
Sbjct: 1 MQDELFETEKAPQKNAKNAKNAPKKSFEE--HVHSLERVIDRLNDPNLSLKDGMDLYKTA 58
Query: 104 LVFIFDYVVGIEIKFSKNDK 123
+ +F +E +S+ +K
Sbjct: 59 MQELFLAQKLLENAYSEYEK 78
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 24.6 bits (52), Expect = 2.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 46 EELSHIEEKPNKEIKTTFNQLKKQVLEKNH 75
E+ S E + I+ + +Q KKQ+ E NH
Sbjct: 135 EKFSKSLESEKESIQNSLHQWKKQLAETNH 164
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 24.6 bits (52), Expect = 2.2
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 1/52 (1%)
Query: 32 ELKKHFSEINGDLTEELSHIEEKPNKEIKTTFNQLKKQVLEKNHPHTLKNPF 83
E+ +F G L ++L+ + K EIKT ++KKQ + L N +
Sbjct: 6 EMGANFYRELGKLEKQLAKYQSKV-LEIKTQMKEIKKQYSQAKKDENLANKY 56
>ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [Helicobacter pylori J99]
Length = 312
Score = 24.6 bits (52), Expect = 2.2
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 25 FEN---QFRNELKKHFSEINGDLTEELSHIEEKP-NKEIKTTFNQL---KKQVLEKNHPH 77
FEN + +NE++ + I GD E+ I EK +KE+K+ ++ L +K L ++
Sbjct: 7 FENHIKEIQNEIE--LALIRGD--EDAKEILEKRLDKEVKSIYSNLTDFQKLQLARHPDR 62
Query: 78 TLKNPFSNLTSHFLYQPFGSQNYPD 102
+ +L Y+ FG ++Y D
Sbjct: 63 PYAMDYIDLILKDKYEVFGDRHYND 87
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 24.6 bits (52), Expect = 2.2
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 68 KQVLEKNHPHTLKNPFSNLTSHFLYQPFGSQN 99
K LE+N +K N T +Y P GS++
Sbjct: 241 KPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEH 272
>ref|NP_223506.1| putative [Helicobacter pylori J99]
Length = 313
Score = 24.3 bits (51), Expect = 2.9
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 6/52 (11%)
Query: 35 KHFSEINGDLTEELSHIEEKPNKEIKTTFNQLKKQVLEKNHPHTLKNPFSNL 86
KH +I+ + ELS EK + +K+ + + NHPH K+ F +
Sbjct: 260 KHKEKIDYTVALELSAKNEKFSGFLKSVVDY------DPNHPHRYKDEFDEI 305
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 23.9 bits (50), Expect = 3.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 138 NLPKPNAIYVYGVANA-NITFFKGSDILSYETREVLLKYFDILDKDE 183
NLP +Y + N N TF IL + +LL+ +ILDK +
Sbjct: 180 NLPTDKNYCIYLLENKLNNTFNDDKKILFQSMKNILLQDDNILDKTD 226
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 23.5 bits (49), Expect = 5.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 139 LPKPNAIYVYGVANANI 155
+ KP A Y+YG N N+
Sbjct: 43 IAKPQAAYMYGTKNVNM 59
>ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter pylori J99]
Length = 344
Score = 23.1 bits (48), Expect = 6.5
Identities = 13/45 (28%), Positives = 25/45 (54%), Gaps = 1/45 (2%)
Query: 152 NANITFFKGSDILSYE-TREVLLKYFDILDKDERSLKNALKDLEN 195
N ++ +KG + E TRE++ + + LD +KN + ++EN
Sbjct: 148 NFSLIIYKGMGYVPSENTRELMPEGYMPLDGSFTPIKNVVYEIEN 192
>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 421
Score = 23.1 bits (48), Expect = 6.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 182 DERSLKNALKDLEN 195
+E+S+ NALK+LEN
Sbjct: 393 NEKSMLNALKELEN 406
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 23.1 bits (48), Expect = 6.5
Identities = 11/42 (26%), Positives = 21/42 (49%)
Query: 29 FRNELKKHFSEINGDLTEELSHIEEKPNKEIKTTFNQLKKQV 70
F NELK+ +++ D+ EE+ + QL+++V
Sbjct: 167 FGNELKQRKTKLIEDIERRFKECEEQFRGSVGKNIEQLEERV 208
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 23.1 bits (48), Expect = 6.5
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 56 NKEIKTTFNQLKKQVLE---KNHPHTLKNPFSNLTSHFLYQPFGSQNYPDFLVFIFDYV 111
+KE+ +L K ++ + H L SN F+ P + +Y + F+ D++
Sbjct: 7 SKEVSHNLKELSKTLISYPFEKHVEALGEQCSN----FVSIPINNDDYSNICTFVSDFI 61
>ref|NP_223985.1| 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE [Helicobacter pylori
J99]
Length = 237
Score = 22.7 bits (47), Expect = 8.5
Identities = 8/26 (30%), Positives = 16/26 (60%)
Query: 16 FASSSTGEQFENQFRNELKKHFSEIN 41
F+S + E+ + + + E KH+ E+N
Sbjct: 211 FSSPTWYEELQERMQKEYLKHYHELN 236
>ref|NP_223465.1| putative [Helicobacter pylori J99]
Length = 108
Score = 22.7 bits (47), Expect = 8.5
Identities = 20/64 (31%), Positives = 27/64 (41%), Gaps = 8/64 (12%)
Query: 10 TNKRKFFASSSTGEQFENQFRNELKKHFSEINGDLTEELSHIEEKPNKEIKTTFNQLKKQ 69
TNK F + F Q E K+F I EKP +EI+ + Q KQ
Sbjct: 42 TNKPLCFIEERLRKPFTKQSVKEDIKNFYRA--------LKISEKPCEEIQFSKEQKIKQ 93
Query: 70 VLEK 73
+LE+
Sbjct: 94 LLEE 97
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,823
Number of Sequences: 1491
Number of extensions: 14633
Number of successful extensions: 72
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 34
length of query: 228
length of database: 494,079
effective HSP length: 75
effective length of query: 153
effective length of database: 382,254
effective search space: 58484862
effective search space used: 58484862
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)