BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646147|ref|NP_208331.1| ubiquinol cytochrome c
oxidoreductase, Rieske 2Fe-2S subunit (fbcF) [Helicobacter pylori
26695]
(167 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224177.1| Ubiquinol cytochrome c oxidoreductase, 2Fe... 340 2e-95
ref|NP_223902.1| NADH oxidoreductase I [Helicobacter pylori... 28 0.099
ref|NP_224023.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223645.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 23 3.2
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 22 7.1
>ref|NP_224177.1| Ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit [Helicobacter
pylori J99]
Length = 167
Score = 340 bits (871), Expect = 2e-95
Identities = 163/167 (97%), Positives = 166/167 (98%)
Query: 1 MADIQRRDFLGMSLASVTAIGAIASLVAMKKTWDPLPSVVSAGFTTIDVANMQEGQFSTV 60
MADIQRRDFLGMSLASVTAIGAIASLVAMKKTWDPLPSVVSAGFTTIDVANMQEGQFSTV
Sbjct: 1 MADIQRRDFLGMSLASVTAIGAIASLVAMKKTWDPLPSVVSAGFTTIDVANMQEGQFSTV 60
Query: 61 EWRGKPVYILKRSKKEGFNEKRDFKVGESVFTTAIQICTHLGCIPTYQDEEKGFLCPCHG 120
EWRGKPVYILKRSKKEGFNEKRDFK+G+SVFTTAIQICTHLGCIPTYQDEEKGFLCPCHG
Sbjct: 61 EWRGKPVYILKRSKKEGFNEKRDFKIGDSVFTTAIQICTHLGCIPTYQDEEKGFLCPCHG 120
Query: 121 GRFTSDGVNIAGTPPPRPFDIPPFKIEGTKITFGEAGAEYKKMMAKA 167
GRFT+DGVNIAGTPPPRPFDIPPFKIEGT ITFGEAGAEYKKMMAKA
Sbjct: 121 GRFTADGVNIAGTPPPRPFDIPPFKIEGTNITFGEAGAEYKKMMAKA 167
>ref|NP_223902.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 409
Score = 28.5 bits (62), Expect = 0.099
Identities = 17/45 (37%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Query: 120 GGRFTSDGVNIAGTPPPRPFDIPPFKIEGTKITFGEAGAEYKKMM 164
G R T + + I G P D+PP +EG K GE E KK++
Sbjct: 163 GARLTHNAIRIGGVP----LDLPPNWLEGLKKFLGEM-RECKKLI 202
>ref|NP_224023.1| putative [Helicobacter pylori J99]
Length = 243
Score = 25.0 bits (53), Expect = 1.1
Identities = 20/75 (26%), Positives = 33/75 (43%), Gaps = 17/75 (22%)
Query: 43 GFTTI-DVANMQEGQFSTVEWRGKPVYILKRSKKEGFNE-----------KRDFKVGESV 90
GF I DVA++++ + +EWR K K++ K+ + + KRD V +
Sbjct: 26 GFPRIFDVADIEQEEREVIEWREK-----KKASKQSYKQNLQINKIANDLKRDKIVDKRT 80
Query: 91 FTTAIQICTHLGCIP 105
+ I G IP
Sbjct: 81 ILSVIDADIERGFIP 95
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 24.3 bits (51), Expect = 1.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 60 VEWRGKPVYILKRSKKEGFNEKRDFKVGES 89
+E + K + + + K G NE DF +G S
Sbjct: 1986 IETKSKGIEQFRNAHKLGLNELEDFNMGSS 2015
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 23.5 bits (49), Expect = 3.2
Identities = 24/84 (28%), Positives = 37/84 (43%), Gaps = 13/84 (15%)
Query: 43 GFTTIDVANMQEGQFSTVEW-RGKPVYILK------RSKKEGFNEKRDFKV------GES 89
GF DV GQF +E G+ + ++ R GF E KV GE+
Sbjct: 558 GFEARDVHPTYYGQFGPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKVVDGKVAGET 617
Query: 90 VFTTAIQICTHLGCIPTYQDEEKG 113
++ TAIQ +H+ + +E+G
Sbjct: 618 IYLTAIQEDSHIIAPASTPIDEEG 641
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 22.3 bits (46), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 139 FDIPPFKIEGTKITFGE 155
+ +PPF IE K +GE
Sbjct: 495 YGVPPFLIEKAKAFYGE 511
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,056
Number of Sequences: 1491
Number of extensions: 6191
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 167
length of database: 494,079
effective HSP length: 71
effective length of query: 96
effective length of database: 388,218
effective search space: 37268928
effective search space used: 37268928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)