BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646149|ref|NP_208333.1| hypothetical protein
[Helicobacter pylori 26695]
(136 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224175.1| putative [Helicobacter pylori J99] 258 3e-71
ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter ... 27 0.26
ref|NP_223805.1| Flavodoxin [Helicobacter pylori J99] 25 1.0
ref|NP_223156.1| Outer membrane protein [Helicobacter pylor... 24 1.7
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 23 2.2
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 23 2.2
ref|NP_223355.1| 3-OXOACID COA-TRANSFERASE, SUBUNIT A [Heli... 23 2.9
ref|NP_223524.1| putative ALKYLPHOSPHONATE UPTAKE PROTEIN [... 22 8.5
ref|NP_223217.1| putative [Helicobacter pylori J99] 22 8.5
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 22 8.5
>ref|NP_224175.1| putative [Helicobacter pylori J99]
Length = 136
Score = 258 bits (660), Expect = 3e-71
Identities = 131/136 (96%), Positives = 134/136 (98%)
Query: 1 MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGS 60
MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSK+TVVIGQTGS
Sbjct: 1 MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDGELEGVVHSKNTVVIGQTGS 60
Query: 61 VVGEIFTNKLVVSGKFTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQ 120
VVGEIF NKLVV+GKFTGTVEAEVVEIMPLG LDGKIS+QELVVERKGILIGETRPKNIQ
Sbjct: 61 VVGEIFANKLVVNGKFTGTVEAEVVEIMPLGRLDGKISTQELVVERKGILIGETRPKNIQ 120
Query: 121 GGALLINEQEKKIENK 136
GGALLINEQEKKIENK
Sbjct: 121 GGALLINEQEKKIENK 136
>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
Length = 336
Score = 26.6 bits (57), Expect = 0.26
Identities = 25/107 (23%), Positives = 45/107 (41%), Gaps = 12/107 (11%)
Query: 20 IIAQGTKIKGE----LHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVVSGK 75
II G+ I G+ H HV E G+V + V IG ++ +F L+ G
Sbjct: 164 IIHAGSVIGGDGFGYAHTALGEHVKIEHVGIVRIQKNVEIGANTAIDRAVFGETLIKEG- 222
Query: 76 FTGTVEAEVVEIMPLGHLDGKISSQELVVERKGILIGETRPKNIQGG 122
++ ++ +GH + + +VV + G+ T +N+ G
Sbjct: 223 ------VKIDNLVQIGH-NCVLGEHSIVVSQVGLSGSTTTGRNVVFG 262
>ref|NP_223805.1| Flavodoxin [Helicobacter pylori J99]
Length = 164
Score = 24.6 bits (52), Expect = 1.0
Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
Query: 44 EGVVH----SKSTVVIGQTGSVVGEIFTNKLVVSGKFTGTV 80
EG+ H +K+ V+GQT + +K V GKF G V
Sbjct: 98 EGIFHIYEKAKAGKVVGQTPTDGYHFEASKAVEGGKFVGLV 138
>ref|NP_223156.1| Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 23.9 bits (50), Expect = 1.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 27 IKGELHLDYHLHVDGELEGVVHSKSTVVIGQTGSVVGEIFTN 68
+KG + +++ G+LEG VH + G + G+++ N
Sbjct: 54 VKGIYPTETFVNLTGKLEGSVHLGRGWTVNVGGVLGGQVYDN 95
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 23.5 bits (49), Expect = 2.2
Identities = 23/96 (23%), Positives = 40/96 (40%), Gaps = 6/96 (6%)
Query: 43 LEGVVHSKSTVVIGQTGSVVGEI-FTNKLVVSGKF---TGTVEAEVVEIMPLGHLDGKIS 98
L + +K V I + + +I F N + K TGT + E E + + +L+
Sbjct: 342 LHQALEAKEGVSIKEESQTLADITFQNYFRMFSKLSGMTGTAQTEATEFLEIYNLEVVSI 401
Query: 99 SQELVVERKGI--LIGETRPKNIQGGALLINEQEKK 132
L ++RK + LI ++ + L I E K
Sbjct: 402 PTNLAIKRKDLNDLIYKSEKEKFDAVILKIKELHDK 437
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 23.5 bits (49), Expect = 2.2
Identities = 13/41 (31%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 1 MAIFDNNNKSANAKTGPATIIAQGTKIKGELHLDYHLHVDG 41
+ + N N + AK II GT +KG +H+ H + +G
Sbjct: 134 VGVTTNINNTYRAKK---VIITTGTFLKGVVHIGEHQNQNG 171
>ref|NP_223355.1| 3-OXOACID COA-TRANSFERASE, SUBUNIT A [Helicobacter pylori J99]
Length = 232
Score = 23.1 bits (48), Expect = 2.9
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 15 TGPATIIAQGTKIKGELHLDYHLH--VDGELEGVVHSKSTVVIGQTGSVVGEIFTNKLVV 72
TG T+IAQG + + +Y L + G+ + KS + F +
Sbjct: 121 TGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAM 180
Query: 73 SGKFTGTVEAEVVEIMPLGHLD 94
+ K AEV EI+P G LD
Sbjct: 181 AAKIC---VAEVEEIVPAGELD 199
>ref|NP_223524.1| putative ALKYLPHOSPHONATE UPTAKE PROTEIN [Helicobacter pylori
J99]
Length = 109
Score = 21.6 bits (44), Expect = 8.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 16 GPATIIAQGTKIKGELHLDYHLHVDGELEG 45
G + ++ +GTKIK ++ +VD ++EG
Sbjct: 67 GSSLVLKKGTKIKNIKLVNSDHNVDCKVEG 96
>ref|NP_223217.1| putative [Helicobacter pylori J99]
Length = 289
Score = 21.6 bits (44), Expect = 8.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 110 LIGETRPKNIQGGALLINEQEKKIE 134
++ + + NIQG +L+ EKKIE
Sbjct: 219 IMTQLQKSNIQGEWVLVLLNEKKIE 243
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 21.6 bits (44), Expect = 8.5
Identities = 8/22 (36%), Positives = 11/22 (49%)
Query: 8 NKSANAKTGPATIIAQGTKIKG 29
NK N P ++A G I+G
Sbjct: 352 NKELNKSVNPDEVVAVGASIQG 373
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.134 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,247
Number of Sequences: 1491
Number of extensions: 5298
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 136
length of database: 494,079
effective HSP length: 69
effective length of query: 67
effective length of database: 391,200
effective search space: 26210400
effective search space used: 26210400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 44 (21.6 bits)