BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644785|ref|NP_206955.1| hypothetical protein
[Helicobacter pylori 26695]
(200 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222865.1| putative [Helicobacter pylori J99] 379 e-107
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 28 0.13
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 25 1.1
ref|NP_222977.1| putative [Helicobacter pylori J99] 25 1.9
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 24 3.2
ref|NP_224053.1| putative carbon storage regulator [Helicob... 24 3.2
ref|NP_223597.1| putative [Helicobacter pylori J99] 24 3.2
ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 24 3.2
ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 3.2
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 23 4.2
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kina... 23 5.4
ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicoba... 23 7.1
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 23 7.1
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 23 7.1
ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99] 23 7.1
ref|NP_223008.1| putative [Helicobacter pylori J99] 22 9.3
>ref|NP_222865.1| putative [Helicobacter pylori J99]
Length = 198
Score = 379 bits (974), Expect = e-107
Identities = 187/198 (94%), Positives = 192/198 (96%)
Query: 3 VLKKMIGLVVVLSVLLARDNPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQI 62
+LKKMIGLV VLSVLLARDNPFEPEINSKNLQGGF+GIYD Y KEIHVDLPTSARILK+I
Sbjct: 1 MLKKMIGLVAVLSVLLARDNPFEPEINSKNLQGGFSGIYDDYLKEIHVDLPTSARILKKI 60
Query: 63 TLTYQDIDGSIHSKVVGIDKGIDWHYPLKLSQHTLDPAAFEKRYQIQDFDFLMASNTMIL 122
TLTYQDIDGSIHSKVVGIDK IDWHYPLKLSQHTL+ AFEKRYQIQDFDFLMA+NTMIL
Sbjct: 61 TLTYQDIDGSIHSKVVGIDKSIDWHYPLKLSQHTLNQDAFEKRYQIQDFDFLMANNTMIL 120
Query: 123 RSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLILDG 182
RSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLILDG
Sbjct: 121 RSPYKILRSFVLVNPYRIVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLILDG 180
Query: 183 KYRYLLEEKNGAYELKLK 200
KYRYLLEEKNGAYELKLK
Sbjct: 181 KYRYLLEEKNGAYELKLK 198
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 28.5 bits (62), Expect = 0.13
Identities = 24/107 (22%), Positives = 44/107 (40%), Gaps = 8/107 (7%)
Query: 22 NPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGID 81
N +P + N G G+ + F+E + + ++ + LTY D+ ++ ++ V ID
Sbjct: 156 NTIKPMLQKIN---GVGGVQLNGFRERQIRIYADPTLMNKYNLTYADLFSTLKAENVEID 212
Query: 82 KGIDWHYPLKLSQHTLDPAAFEKRYQIQDFDFLMASNTMILRSPYKI 128
G + SQ L Y + D + + N + L KI
Sbjct: 213 GG-----RIVNSQRELSILINANSYSVADVEKIQVGNHVRLGDIAKI 254
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 25.4 bits (54), Expect = 1.1
Identities = 18/91 (19%), Positives = 41/91 (44%), Gaps = 3/91 (3%)
Query: 80 IDKGIDWHYPLKLSQHTLDPAAFEKRYQIQDFDFLMASNTMILRSPYKILRSFVLVNPYR 139
I++ + ++P +L ++T D + K+ + +F M I L+ +
Sbjct: 315 IEELLSKYHPTRLKEYTKDGIIYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKE 374
Query: 140 IVLDTQKGPLDIYQNMDLNQKFFSHIKVGTH 170
+ + G + N DL++K+FS I++ +
Sbjct: 375 VYFANKHGKI---LNDDLSEKYFSAIEISEY 402
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 24.6 bits (52), Expect = 1.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 104 KRYQIQDFDFLMASNTMILRSPYKILRSFVLVN 136
KR++IQD DFL SP+ ++ FV N
Sbjct: 128 KRFKIQDVDFLF--------SPFSLIYDFVRDN 152
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 23.9 bits (50), Expect = 3.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 111 FDFLMASNTMILRSPYKILRSFVLVNPYRIVLD 143
+D L + +SP ++ S+V+ N YR V D
Sbjct: 192 YDDLHYDLKIAFKSPNNLIPSYVITNGYRPVAD 224
>ref|NP_224053.1| putative carbon storage regulator [Helicobacter pylori J99]
Length = 76
Score = 23.9 bits (50), Expect = 3.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 69 IDGSIHSKVVGIDKG 83
ID +IH KV+ ID+G
Sbjct: 14 IDDNIHIKVISIDRG 28
>ref|NP_223597.1| putative [Helicobacter pylori J99]
Length = 125
Score = 23.9 bits (50), Expect = 3.2
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 38 NGIYDSYFKEIHVDLPTSARILKQITLTYQD 68
NGIY SYFKE P AR Q+ +D
Sbjct: 89 NGIYGSYFKE-----PYPARATFQVAKLPKD 114
>ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 792
Score = 23.9 bits (50), Expect = 3.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 167 VGTHKDYYRITLILDGKYRY 186
VGT DY++I +++G RY
Sbjct: 560 VGTSTDYFQIFNVMEGGSRY 579
>ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 309
Score = 23.9 bits (50), Expect = 3.2
Identities = 15/49 (30%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Query: 133 VLVNPYRIVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLILD 181
+LVN Y+ +L ++ D +++ NQ+ +S IK K +Y+ +LD
Sbjct: 89 ILVNFYQALLKDKQALYDNLFSLEPNQETYSIIKQEL-KAHYKKECVLD 136
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 23.5 bits (49), Expect = 4.2
Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 3/63 (4%)
Query: 91 KLSQHTLDPAAFEKRYQIQDFD-FLMASNTMILRSPYKILR--SFVLVNPYRIVLDTQKG 147
+L +++ D +R Q+QDFD + +T+ + +KILR F +N +++L
Sbjct: 400 RLREYSKDHLKAFQRLQVQDFDGRIKPLDTISIEYIHKILRKDDFQGLNAMQVLLGIMFF 459
Query: 148 PLD 150
P D
Sbjct: 460 PND 462
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.5 bits (49), Expect = 4.2
Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 29/178 (16%)
Query: 22 NPFEPEINSKNLQGGFNGIYDSYFKEIHVDLPTSARILKQITLTYQDIDGSIHSKVVGID 81
NP ++ +N + N +YD + K+ R K I QD+ G +KV+G++
Sbjct: 964 NPLSSDLELENKRAKLNLVYDEFVKKFGYLNENKNR--KDIR---QDLYG---AKVLGLE 1015
Query: 82 KGIDWHY-PLKLSQHTLDP-AAFEKRYQIQDFDFLMASNTMILRSPYKILRSFVLVNPYR 139
K + P ++P A K+ QI L +I+ + + L
Sbjct: 1016 KDFEKEITPRSAKMQNIEPRQAQAKKAQIFFERTLNPKKELIITNAKEAL---------- 1065
Query: 140 IVLDTQKGPLDIYQNMDLNQKFFSHIKVGTHKDYYRITLILDGKYRYLLEEKNGAYEL 197
I QKG LD++ F T I +L+ K Y + NG Y L
Sbjct: 1066 IASINQKGGLDLH---------FIRDHFTTQSLETTIKELLEQKLIYKDHKDNGGYIL 1114
>ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kinase [Helicobacter pylori
J99]
Length = 312
Score = 23.1 bits (48), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 163 SHIKVGTHKDYYRITLILDGKYRYLL 188
+H+ + KDY RIT I + R LL
Sbjct: 191 AHLVITEDKDYQRITSITNPTKRMLL 216
>ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori J99]
Length = 293
Score = 22.7 bits (47), Expect = 7.1
Identities = 12/42 (28%), Positives = 17/42 (39%)
Query: 98 DPAAFEKRYQIQDFDFLMASNTMILRSPYKILRSFVLVNPYR 139
D K +I DF IL + L +F+ NPY+
Sbjct: 175 DLLVLAKYMRILSHDFTKRYENQILNIHHSFLPAFIGANPYQ 216
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 22.7 bits (47), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 17 LLARDNPFEPEINSKNLQGGFN 38
L A +NP+ ++N+ N Q FN
Sbjct: 570 LTAFNNPYSAKVNASNFQFLFN 591
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 22.7 bits (47), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 17 LLARDNPFEPEINSKNLQGGFN 38
L A +NP+ ++N+ N Q FN
Sbjct: 557 LTAFNNPYSAKVNASNFQFLFN 578
>ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 375
Score = 22.7 bits (47), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 18 LARDNPFEPEINSKNLQ 34
L ++N F P +N K LQ
Sbjct: 136 LVKENDFTPSLNEKELQ 152
>ref|NP_223008.1| putative [Helicobacter pylori J99]
Length = 360
Score = 22.3 bits (46), Expect = 9.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 25 EPEINSKNLQGGFNGIYDSYFKEIHVDLPTSAR 57
EP+ L+GG G+ +++FK PT A+
Sbjct: 107 EPKERVLALKGGKGGLGNAHFKSATKQQPTYAQ 139
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.323 0.143 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,137
Number of Sequences: 1491
Number of extensions: 10407
Number of successful extensions: 41
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 17
length of query: 200
length of database: 494,079
effective HSP length: 73
effective length of query: 127
effective length of database: 385,236
effective search space: 48924972
effective search space used: 48924972
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)