BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646153|ref|NP_208337.1| hypothetical protein
[Helicobacter pylori 26695]
(170 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224171.1| putative [Helicobacter pylori J99] 334 7e-94
ref|NP_223866.1| PERIPLASMIC CYTOCHROME C-553 [Helicobacter... 26 0.50
ref|NP_223621.1| putative cation efflux system protein [Hel... 25 1.1
ref|NP_222943.1| PORPHOBILINOGEN DEAMINASE [Helicobacter py... 24 1.9
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 24 2.5
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 23 3.2
ref|NP_223440.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_223293.1| Hydrogenase, large subunit [Helicobacter p... 23 5.5
ref|NP_223789.1| putative [Helicobacter pylori J99] 22 7.2
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 22 9.4
>ref|NP_224171.1| putative [Helicobacter pylori J99]
Length = 170
Score = 334 bits (857), Expect = 7e-94
Identities = 165/170 (97%), Positives = 168/170 (98%)
Query: 1 MRALLFFILLLWFKGCGYKPIAAYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQ 60
MR LLFFILLLWFKGCGYKPIA YAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQ
Sbjct: 1 MRVLLFFILLLWFKGCGYKPIATYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQ 60
Query: 61 RFQSRLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ 120
RFQ+RLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ
Sbjct: 61 RFQNRLASEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQKTFQ 120
Query: 121 DSGYYNYAVNLQDPLNTYQNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK 170
+SGYYNYAVNLQDPLNT+QNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK
Sbjct: 121 NSGYYNYAVNLQDPLNTFQNRYYAINQAVEQTLTKFVAQIAYEGKFNNEK 170
>ref|NP_223866.1| PERIPLASMIC CYTOCHROME C-553 [Helicobacter pylori J99]
Length = 96
Score = 26.2 bits (56), Expect = 0.50
Identities = 16/62 (25%), Positives = 29/62 (45%)
Query: 14 KGCGYKPIAAYAQNALGDSVYVKLIVNLPNPENSVEFKDLMNRLVVQRFQSRLASEKDAD 73
KGC + + ALG S V ++ E+ + FK N+ V Q++ S++D
Sbjct: 27 KGCAACHGVKFEKKALGKSKIVNMMSEKEIEEDLMAFKSGANKNPVMTAQAKKLSDEDIK 86
Query: 74 SI 75
++
Sbjct: 87 AL 88
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 25.0 bits (53), Expect = 1.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 68 SEKDADSIIIIEITNVTDTSITQNKEGFTTFYRATVSVNYTYDNKRGTQK 117
S KDA++ II T + Q E F + VS+N YD TQK
Sbjct: 286 SLKDANTKEII-------TQVYQKLEELKPFLPSGVSINVFYDRSEFTQK 328
>ref|NP_222943.1| PORPHOBILINOGEN DEAMINASE [Helicobacter pylori J99]
Length = 306
Score = 24.3 bits (51), Expect = 1.9
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 20 PIAAYAQNALGDSVYVKLIVNLPN 43
PI +A N +GD V ++ ++ LPN
Sbjct: 242 PIGVHA-NLMGDEVKIRAVLGLPN 264
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 23.9 bits (50), Expect = 2.5
Identities = 11/46 (23%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 36 KLIVNLPNPENSVEFKDLMNRLV-VQRFQSRLASEKDADSIIIIEI 80
K+ +N+ NPE + F L N V + R + + ++ A + ++++
Sbjct: 494 KIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDL 539
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 23.5 bits (49), Expect = 3.2
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 85 DTSITQNKEGFTTFYRATVSVNYTYDNKRG 114
+ I +KEGF FY TY NK G
Sbjct: 2312 EREIVASKEGFVRFYNLR-----TYTNKEG 2336
>ref|NP_223440.1| putative [Helicobacter pylori J99]
Length = 184
Score = 23.1 bits (48), Expect = 4.2
Identities = 12/31 (38%), Positives = 16/31 (50%)
Query: 47 SVEFKDLMNRLVVQRFQSRLASEKDADSIII 77
S+EFKD MN LV F + K + I +
Sbjct: 141 SLEFKDDMNNLVTITFSQAEINPKIPNEIFV 171
>ref|NP_223293.1| Hydrogenase, large subunit [Helicobacter pylori J99]
Length = 578
Score = 22.7 bits (47), Expect = 5.5
Identities = 9/22 (40%), Positives = 12/22 (53%)
Query: 14 KGCGYKPIAAYAQNALGDSVYV 35
KGCG + AY + LG Y+
Sbjct: 274 KGCGLRNFIAYEEVLLGKDKYL 295
>ref|NP_223789.1| putative [Helicobacter pylori J99]
Length = 97
Score = 22.3 bits (46), Expect = 7.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 134 PLNTYQNRYYAINQAVEQTLTKFVAQIAYEG 164
P +T +R IN +EQ + + + IA+ G
Sbjct: 33 PRSTSAHRTLLINHFLEQVILQNIKTIAFRG 63
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 21.9 bits (45), Expect = 9.4
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 101 ATVSVNYTYDNKRGTQKTFQDSGYYNYAVNLQD 133
A V+ + + K+ T++TF + NL++
Sbjct: 269 ARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEE 301
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,448
Number of Sequences: 1491
Number of extensions: 7288
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 10
length of query: 170
length of database: 494,079
effective HSP length: 72
effective length of query: 98
effective length of database: 386,727
effective search space: 37899246
effective search space used: 37899246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)