BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646155|ref|NP_208339.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(112 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224169.1| putative [Helicobacter pylori J99] 207 6e-56
ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 28 0.082
ref|NP_223890.1| putative Peptide ABC transporter, ATP-bind... 27 0.18
ref|NP_223827.1| putative [Helicobacter pylori J99] 26 0.24
ref|NP_223980.1| putative [Helicobacter pylori J99] 25 0.41
ref|NP_223475.1| putative osmoprotection binding protein [H... 25 0.53
ref|NP_223909.1| NADH oxidoreductase I [Helicobacter pylori... 23 1.6
ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 23 2.6
ref|NP_223446.1| putative [Helicobacter pylori J99] 23 2.6
ref|NP_224048.1| putative [Helicobacter pylori J99] 22 3.5
ref|NP_223244.1| putative [Helicobacter pylori J99] 22 3.5
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 22 3.5
ref|NP_223937.1| METHIONINE AMINOPEPTIDASE [Helicobacter py... 22 4.5
ref|NP_223457.1| putative [Helicobacter pylori J99] 22 4.5
ref|NP_224050.1| putative [Helicobacter pylori J99] 21 7.7
ref|NP_223809.1| putative [Helicobacter pylori J99] 21 7.7
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 21 7.7
ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 21 7.7
>ref|NP_224169.1| putative [Helicobacter pylori J99]
Length = 112
Score = 207 bits (527), Expect = 6e-56
Identities = 110/112 (98%), Positives = 111/112 (98%)
Query: 1 MDWGRVVHVLFSLISLTTIAGFLYEPNTVVLFVALALNLISVTLKIGVIKRFASELLASS 60
MDWGRV+HVLFSLISLTTIAGFLYEPNTVVLFVALALNLISVTLKIGV KRFASELLASS
Sbjct: 1 MDWGRVIHVLFSLISLTTIAGFLYEPNTVVLFVALALNLISVTLKIGVCKRFASELLASS 60
Query: 61 LATVLHLIPAFVFLQILNNLVTAYMLMIGALISNAFSLIFLLIESVVTSETD 112
LATVLHLIPAFVFLQILNNLVTAYMLMIGALISNAFSLIFLLIESVVTSETD
Sbjct: 61 LATVLHLIPAFVFLQILNNLVTAYMLMIGALISNAFSLIFLLIESVVTSETD 112
>ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 189
Score = 27.7 bits (60), Expect = 0.082
Identities = 26/74 (35%), Positives = 37/74 (49%), Gaps = 3/74 (4%)
Query: 9 VLFSLISLTTIAGFLYEPNTVVLFVALALNLISV-TLKIGVIKRFASELLASSLATVLHL 67
V+ S+IS T A F+ TVV + NL ++ GVI S+ L ++ A +L
Sbjct: 100 VVLSIISST--APFIGLFGTVVEILEAFNNLGALGQASFGVIAPIISKALIATAAGILAA 157
Query: 68 IPAFVFLQILNNLV 81
IPA+ F IL V
Sbjct: 158 IPAYSFYLILKRKV 171
>ref|NP_223890.1| putative Peptide ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 348
Score = 26.6 bits (57), Expect = 0.18
Identities = 19/48 (39%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Query: 32 FVALALNLISVTLKIGVIKRFASEL--LASSLATVLHLIPAFVFLQIL 77
F L + LIS+ L I KR L L+S + V + IPAF+F +L
Sbjct: 126 FSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVL 173
>ref|NP_223827.1| putative [Helicobacter pylori J99]
Length = 459
Score = 26.2 bits (56), Expect = 0.24
Identities = 20/96 (20%), Positives = 43/96 (43%), Gaps = 16/96 (16%)
Query: 27 NTVVLFVALALNLISVTLK----------------IGVIKRFASELLASSLATVLHLIPA 70
++V FVAL+ ++S+ L + + KR+ +L S+ VLH +
Sbjct: 96 SSVFYFVALSAFILSMALLPFSENIARFFGSNDALLSMSKRYIEIILMGSVFMVLHPLAD 155
Query: 71 FVFLQILNNLVTAYMLMIGALISNAFSLIFLLIESV 106
+ ++ ++IG+L + F+ +F+ + V
Sbjct: 156 VFVVNDKRPVLAMVAMLIGSLANIFFNYLFIFVLEV 191
>ref|NP_223980.1| putative [Helicobacter pylori J99]
Length = 242
Score = 25.4 bits (54), Expect = 0.41
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 30 VLFVALALNLISVTLKIGVIKRFASELLASSLATVLHLIPAFVFLQILNNLVTAYMLMIG 89
++F+ + +L SV IG+ A L +LA +L +I F +I+ + + + +
Sbjct: 136 IMFLDIVFSLDSVITAIGI----AKHLEVMALAIILSVIVMMFFSKIVGDFIEKHYRV-- 189
Query: 90 ALISNAFSLIFLLIESV 106
+ +FLL+ V
Sbjct: 190 ----KTLAFVFLLVVGV 202
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 25.0 bits (53), Expect = 0.53
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 38 NLISVTLKIGVIKRFASELLASSLATVLHLIPAFVFLQILNNLVTAYMLMIGALI-SNAF 96
+L+++ LKI V+K E + + L F+ + + + +V + ++IG + N+
Sbjct: 28 HLVAMALKISVVKYLIKEFHDRFIYFIDLLAQHFIIVALSSLIVLVFGVLIGVFVFYNSK 87
Query: 97 SLIFLL 102
+ FLL
Sbjct: 88 ARAFLL 93
>ref|NP_223909.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 100
Score = 23.5 bits (49), Expect = 1.6
Identities = 14/62 (22%), Positives = 27/62 (42%)
Query: 9 VLFSLISLTTIAGFLYEPNTVVLFVALALNLISVTLKIGVIKRFASELLASSLATVLHLI 68
++ L+ +AG L N ++LF + + L ++ + I R+ L A + I
Sbjct: 9 IVSGLLFCIGLAGMLKRKNILLLFFSTEIMLNAINIGFVAISRYTHNLDGQMFALFIIAI 68
Query: 69 PA 70
A
Sbjct: 69 AA 70
>ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 217
Score = 22.7 bits (47), Expect = 2.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 22 FLYEPNTVVLFVALALNLISVTLKIGVIKRFASELLASSLATVLHLIPAFVFLQIL 77
FL + +VV +AL + IG+ + LL SL ++ L+P IL
Sbjct: 153 FLLKETSVVGAIALTDIMFVAKDLIGIYYKTTESLLMLSLTYLIALLPLSALFVIL 208
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 22.7 bits (47), Expect = 2.6
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 43 TLKIGVIKRFASELLASSLATVLHLIPAFVFLQILNNLV-TAYMLMIGALISNAFS 97
T+ ++R +E++A AT +PAFV + NN + A + AL +N F+
Sbjct: 4 TIFCATMQRGVAEIVAVE-ATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFT 58
>ref|NP_224048.1| putative [Helicobacter pylori J99]
Length = 187
Score = 22.3 bits (46), Expect = 3.5
Identities = 14/44 (31%), Positives = 23/44 (51%)
Query: 37 LNLISVTLKIGVIKRFASELLASSLATVLHLIPAFVFLQILNNL 80
LN ++ I I+ + +L SL ++ P FVFLQ N++
Sbjct: 120 LNKLAKHDDISKIEDAFTLILRKSLQDMIEKCPYFVFLQSKNSV 163
>ref|NP_223244.1| putative [Helicobacter pylori J99]
Length = 183
Score = 22.3 bits (46), Expect = 3.5
Identities = 24/79 (30%), Positives = 38/79 (47%), Gaps = 11/79 (13%)
Query: 7 VHVLFSLISLTTIAGFL-----YEPNTVVLFVAL---ALNLISVTLKIGVIKRFASELLA 58
V + F+L+ LT I GFL + ++F AL +L L S L + + +S LL
Sbjct: 93 VMLFFNLLLLTDILGFLPFSIYHHFMASLIFSALFCSSLFLSSPLLGVIALVALSSSLLM 152
Query: 59 SSLATVLHLI---PAFVFL 74
S +L + P F+F+
Sbjct: 153 RSNFQILDSLLDFPLFLFV 171
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 22.3 bits (46), Expect = 3.5
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 67 LIPAFVFLQILNNLVTAYMLMIGALISNAFSLI 99
L+ AF+ I++NL+T + + +++ F+L+
Sbjct: 311 LVLAFLVFIIISNLITKRISRVNNTLNDFFNLL 343
>ref|NP_223937.1| METHIONINE AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 253
Score = 21.9 bits (45), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 41 SVTLKIGVIKRFASELLASSLATVLHLI 68
++TL IG I +LLA S +++H I
Sbjct: 108 ALTLPIGAISPQDEKLLACSKESLMHAI 135
>ref|NP_223457.1| putative [Helicobacter pylori J99]
Length = 279
Score = 21.9 bits (45), Expect = 4.5
Identities = 7/26 (26%), Positives = 17/26 (64%)
Query: 24 YEPNTVVLFVALALNLISVTLKIGVI 49
Y PN+ ++ ++ ++ V+L IG++
Sbjct: 80 YAPNSRWKYLGTSIGILGVSLVIGIV 105
>ref|NP_224050.1| putative [Helicobacter pylori J99]
Length = 141
Score = 21.2 bits (43), Expect = 7.7
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Query: 33 VALALNLISVTLKIGVIKRFASELLASSLATVLHLIPAFVFLQ 75
+ALA+ ++S LKI I F + L +L+ A+ +Q
Sbjct: 38 LALAVGVLS--LKIEAISNFYGLCVLGVLLACFYLLDAYYLMQ 78
>ref|NP_223809.1| putative [Helicobacter pylori J99]
Length = 386
Score = 21.2 bits (43), Expect = 7.7
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 35 LALNLISVTLKIGVIKRFASELLASSLATVLHLIPAFVFLQILNNLVTAYMLMI 88
+A +IS+ + K ++ ++ SSL +L + P + I + Y LM+
Sbjct: 253 IAFQVISILIHFLKAKNYSQKIALSSLLVLLGVSP-LLLSNIPYCFIGVYALMV 305
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 21.2 bits (43), Expect = 7.7
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 86 LMIGALISNAFSLIFLLIESVVTSE 110
LM+ ++NAF L+ + I++ ++S+
Sbjct: 516 LMVSLSLTNAFKLLGIEIKTKISSK 540
>ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 239
Score = 21.2 bits (43), Expect = 7.7
Identities = 17/66 (25%), Positives = 30/66 (44%), Gaps = 2/66 (3%)
Query: 40 ISVTLKIGVIKRFASELLASSLAT--VLHLIPAFVFLQILNNLVTAYMLMIGALISNAFS 97
+ + K ++RF LL S A + P F + I++ AY LM+ + +
Sbjct: 124 VGLASKSNSMQRFYPFLLGMSFALGWTPCIGPIFTSIVIMSASKDAYGLMLMVVFVMGLA 183
Query: 98 LIFLLI 103
+ FLL+
Sbjct: 184 IPFLLV 189
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.330 0.142 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,996
Number of Sequences: 1491
Number of extensions: 2968
Number of successful extensions: 25
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 18
length of query: 112
length of database: 494,079
effective HSP length: 66
effective length of query: 46
effective length of database: 395,673
effective search space: 18200958
effective search space used: 18200958
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 43 (21.2 bits)