BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646158|ref|NP_208342.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(127 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224166.1| putative [Helicobacter pylori J99] 168 4e-44
ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 64 1e-12
ref|NP_223770.1| putative [Helicobacter pylori J99] 26 0.30
ref|NP_223735.1| putative [Helicobacter pylori J99] 22 4.4
ref|NP_224095.1| putative [Helicobacter pylori J99] 22 5.7
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 22 5.7
ref|NP_222872.1| putative histidine kinase sensor protein [... 22 7.5
ref|NP_224051.1| putative [Helicobacter pylori J99] 21 9.8
ref|NP_224004.1| putative [Helicobacter pylori J99] 21 9.8
ref|NP_223621.1| putative cation efflux system protein [Hel... 21 9.8
ref|NP_223056.1| transketolase [Helicobacter pylori J99] 21 9.8
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 21 9.8
>ref|NP_224166.1| putative [Helicobacter pylori J99]
Length = 97
Score = 168 bits (426), Expect = 4e-44
Identities = 85/90 (94%), Positives = 88/90 (97%)
Query: 1 MGQIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVTQGGLIVEVL 60
MGQ K+I+TTLLPL+VLFLIFYFLIVRPQRQQQKKHKEMIE LTKGDKIVTQGGLIVEVL
Sbjct: 1 MGQTKEIITTLLPLLVLFLIFYFLIVRPQRQQQKKHKEMIEGLTKGDKIVTQGGLIVEVL 60
Query: 61 KAEANFFSVKLNDDTTAKLSKNYVAFKLDE 90
KAEANFFSVKLNDDTTAKLSKNYVAFKLDE
Sbjct: 61 KAEANFFSVKLNDDTTAKLSKNYVAFKLDE 90
>ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 526
Score = 64.3 bits (155), Expect = 1e-12
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 60 LKAEANFFSVKLNDDTTAKLSKNYVAFKL----DELDQFGLAEPIVIQQGREEISAKLSG 115
+K EA F+SVKL +L KN + + + LDQFGLAEP+VIQQGREEIS +L G
Sbjct: 116 IKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPVVIQQGREEISVQLPG 175
Query: 116 AKTLKQRQ 123
KTL++ +
Sbjct: 176 IKTLEEER 183
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 26.2 bits (56), Expect = 0.30
Identities = 18/49 (36%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 30 RQQQKKHKEMIESLTK-GDKIVTQGGLIVEVLKAEANFFSVKLNDDTTA 77
+Q K++KEM E LTK +V+Q LI + LK + L T A
Sbjct: 125 QQLDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSSTPA 173
>ref|NP_223735.1| putative [Helicobacter pylori J99]
Length = 345
Score = 22.3 bits (46), Expect = 4.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 7 ILTTLLPLVVLFLIFYFLIVRPQ 29
IL +L PL +FLI F I P+
Sbjct: 268 ILVSLFPLASVFLIPLFGIANPR 290
>ref|NP_224095.1| putative [Helicobacter pylori J99]
Length = 148
Score = 21.9 bits (45), Expect = 5.7
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 12 LPLVVLFLIFYFLIVRPQRQQQK 34
L LVVL LI++F + R+ +K
Sbjct: 93 LALVVLLLIYHFYCKKCMRELEK 115
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 21.9 bits (45), Expect = 5.7
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 50 VTQGGLIVEVLKAEANFFSVKLNDDTTAKLSKNYVAFKLDEL 91
+TQ I+ VLK K+N +L V FKL L
Sbjct: 113 ITQNA-ILNVLKTPRKIDMFKVNAQQARRLLDRIVGFKLSSL 153
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 442
Score = 21.6 bits (44), Expect = 7.5
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 16 VLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIVT 51
+L ++F FL V ++ + ++ +GDK V+
Sbjct: 140 LLLILFLFLFVLQSLLPLRELRSQVKRFAQGDKSVS 175
>ref|NP_224051.1| putative [Helicobacter pylori J99]
Length = 259
Score = 21.2 bits (43), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 63 EANFFSVKLNDDTTAKLSKNYVAFKLD 89
E N FS++ D + A+L K+ LD
Sbjct: 172 EGNSFSIQTTDISVAELLKSKKFLSLD 198
>ref|NP_224004.1| putative [Helicobacter pylori J99]
Length = 248
Score = 21.2 bits (43), Expect = 9.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 14 LVVLFLIFYFLIVR 27
L+ +FLIFYFL ++
Sbjct: 10 LLGIFLIFYFLDIK 23
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 21.2 bits (43), Expect = 9.8
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 5 KDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESL 43
K+I +++ VV+ ++F+ I+ Q + K + + +S+
Sbjct: 430 KEIAVSVVSGVVIIIVFFVPILTLQGLEGKMFRPLAQSI 468
>ref|NP_223056.1| transketolase [Helicobacter pylori J99]
Length = 641
Score = 21.2 bits (43), Expect = 9.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 42 SLTKGDKIVTQGGLIVEVLKAEA 64
S KGDK+ + G VE + A+A
Sbjct: 613 SSAKGDKLFEKFGFSVENITAQA 635
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 21.2 bits (43), Expect = 9.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 1 MGQIKDILTTLLPLVVLFLIFYFLIVRPQRQQQKKHKEMIESLTKGDKIV 50
M + + IL + PL+ L+F L + ++ + M+E + DK V
Sbjct: 440 MHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLEVVPDEDKEV 489
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,025
Number of Sequences: 1491
Number of extensions: 4235
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 12
length of query: 127
length of database: 494,079
effective HSP length: 68
effective length of query: 59
effective length of database: 392,691
effective search space: 23168769
effective search space used: 23168769
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)