BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644786|ref|NP_206956.1| shikimic acid kinase I
(aroK) [Helicobacter pylori 26695]
(162 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99] 311 6e-87
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 31 0.014
ref|NP_222962.1| putative [Helicobacter pylori J99] 30 0.042
ref|NP_222801.1| putative [Helicobacter pylori J99] 28 0.094
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 27 0.36
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 26 0.46
ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 25 1.0
ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 25 1.0
ref|NP_222961.1| putative [Helicobacter pylori J99] 25 1.0
ref|NP_223847.1| abc transporter, ATP-binding protein [Heli... 25 1.4
ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic... 25 1.4
ref|NP_223226.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [H... 25 1.4
ref|NP_223158.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_223761.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_223741.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 24 2.3
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 24 2.3
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 24 2.3
ref|NP_223578.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_223117.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 23 3.9
ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylor... 23 5.1
ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [H... 23 5.1
ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PR... 23 5.1
ref|NP_223196.1| cag island protein [Helicobacter pylori J99] 23 5.1
ref|NP_223088.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 23 5.1
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 22 6.7
ref|NP_223017.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_223980.1| putative [Helicobacter pylori J99] 22 8.8
ref|NP_223365.1| putative [Helicobacter pylori J99] 22 8.8
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 22 8.8
ref|NP_223229.1| putative [Helicobacter pylori J99] 22 8.8
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 22 8.8
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 22 8.8
>ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99]
Length = 162
Score = 311 bits (797), Expect = 6e-87
Identities = 160/162 (98%), Positives = 161/162 (98%)
Query: 1 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFE 60
MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVR IFEELGEDNFRMFE
Sbjct: 1 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVRGIFEELGEDNFRMFE 60
Query: 61 KNLIDELKTLKTPHVISTGGGIVMHENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLN 120
KNLIDELKTLKTPH+ISTGGGIVMHENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLN
Sbjct: 61 KNLIDELKTLKTPHIISTGGGIVMHENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLN 120
Query: 121 NLTQAKELFEKRQALYEKNASFIIDARGGLNNSLKQVLQFIA 162
NLTQAKELFEKRQALYEKNASFIIDARGGLNNSLKQVLQFIA
Sbjct: 121 NLTQAKELFEKRQALYEKNASFIIDARGGLNNSLKQVLQFIA 162
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 31.2 bits (69), Expect = 0.014
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 75 VISTGGGIVMHENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLT-QAKELFEKRQ 133
++ T G N+ G + K+ +K L L NN QA L Q
Sbjct: 2240 LVVTANGFNFSGNIYANGVVDFSKIKGSANVKNLY--------LYNNAQFQANNLTISNQ 2291
Query: 134 ALYEKNASFI---IDARGGLNNSLKQVLQFI 161
A+ EKNASF+ ++ +G NN+ Q ++ +
Sbjct: 2292 AVLEKNASFVTNNLNIQGAFNNNATQKIEVL 2322
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 29.6 bits (65), Expect = 0.042
Identities = 16/49 (32%), Positives = 25/49 (50%)
Query: 108 LNQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARGGLNNSLKQ 156
LN+KE+E L NL +E F+ Q +K +I+ G+ +KQ
Sbjct: 69 LNKKEKEIDEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQ 117
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 28.5 bits (62), Expect = 0.094
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 43 SVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHENLKGLG-TTFYLKMDF 101
S +EIF L E F+K I EL+ P+VI GI HEN+ G G + M+F
Sbjct: 117 SFKEIFVGLEE-----FDKQKIKELE----PNVILGANGIDRHENIIGHGYRKDWSTMNF 167
Query: 102 ETLIKRLNQKEREKRPLLNN---LTQAKELFEKRQALY 136
L + ++ + +P NN L + EKR Y
Sbjct: 168 AKLSENFVEEALKLKP--NNQVFLNFKVKKIEKRNDTY 203
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 26.6 bits (57), Expect = 0.36
Identities = 36/134 (26%), Positives = 56/134 (40%), Gaps = 12/134 (8%)
Query: 5 VLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLI 64
+LIG G GK+S+A+ LALK+ + + E S+ G FEK L
Sbjct: 202 LLIGEAGVGKTSIAE--ALALKIAQKEVPEFLQEYEVYSLDLALMVAGAKYRGDFEKRL- 258
Query: 65 DELKTLKTPHVISTGGGIVMH----ENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLN 120
KTLK I G I++ L G G++ +D ++K + K
Sbjct: 259 --KKTLKE---IQQNGRIILFIDEIHTLLGAGSSNAGSLDAANILKPVLTDGSLKCLGAT 313
Query: 121 NLTQAKELFEKRQA 134
+ + +FEK +A
Sbjct: 314 TFEEYRSVFEKDKA 327
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 26.2 bits (56), Expect = 0.46
Identities = 21/49 (42%), Positives = 31/49 (62%), Gaps = 4/49 (8%)
Query: 2 QHLVLIGFMGSGKSSLAQELGLALKLEV-LDTDMIISERVGLSVREIFE 49
+++ +IG GSGKSSLA LGL LKL + + I+ + VGL + F+
Sbjct: 299 ENIGIIGESGSGKSSLA--LGL-LKLALNSGEEKILGQSVGLLNSKAFK 344
Score = 21.9 bits (45), Expect = 8.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 2 QHLVLIGFMGSGKSSLA 18
+ + ++G GSGKSS+A
Sbjct: 28 ERVAIVGESGSGKSSIA 44
>ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 25.0 bits (53), Expect = 1.0
Identities = 12/31 (38%), Positives = 20/31 (63%)
Query: 3 HLVLIGFMGSGKSSLAQELGLALKLEVLDTD 33
+++LIG GSGK+ +AQ L L + + +D
Sbjct: 150 NILLIGPTGSGKTLMAQTLAKHLDIPIAISD 180
>ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 443
Score = 25.0 bits (53), Expect = 1.0
Identities = 11/46 (23%), Positives = 25/46 (53%)
Query: 2 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGLSVREI 47
+++++IG G GK+ +A+ + +KL + + VG R++
Sbjct: 53 KNILMIGSTGVGKTEIARRMAKIMKLPFVKVEASKYTEVGFVGRDV 98
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 25.0 bits (53), Expect = 1.0
Identities = 29/112 (25%), Positives = 53/112 (46%), Gaps = 24/112 (21%)
Query: 60 EKNLID---ELKTLKTPHVISTGGGIVMHENLKGLGTTFYLKMDF-----ETLIKRL--- 108
E+ ++D +L K P + GG+ + + L + +++++ E L K L
Sbjct: 34 EREVLDKQAQLSAFKNPEL----GGMSLFLQTQQLKSALRMEIEYYQQEGENLTKDLKIL 89
Query: 109 -------NQK-EREKRPLLNNLTQAKELFEKR-QALYEKNASFIIDARGGLN 151
NQ+ E+ K L + KE+ EK+ QAL ++NA + +GGL+
Sbjct: 90 EKDYLLANQELEKAKIILEKEKQKEKEILEKKEQALLDENAMILHWQKGGLH 141
>ref|NP_223847.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 578
Score = 24.6 bits (52), Expect = 1.4
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 2 QHLVLIGFMGSGKSSLAQ-ELGLALKLE---VLDTDMIISE-------RVGLSVREIFEE 50
Q + LIG G GKS+LA +GL +D ++ SE ++G + I+
Sbjct: 392 QKIALIGHSGCGKSTLADIIMGLTYPKSGEIFIDNTLLTSENRRSWRKKIGYIPQNIYLF 451
Query: 51 LGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHENLK 89
G + + IDE + +K + + HE LK
Sbjct: 452 DGTVGDNIAFGSAIDEKRLIKVCKMAHIYDFLCEHEGLK 490
>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 24.6 bits (52), Expect = 1.4
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 115 KRPLLNNLTQAKELFEKRQALYEKNASFIID---ARGGLNNSLK 155
++PL ++L KE+F+ A +++ F ID + G+ N L+
Sbjct: 134 EKPLGHDLKTCKEIFQSISAFFKEEQIFRIDHYLGKKGVQNILE 177
>ref|NP_223226.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [Helicobacter pylori J99]
Length = 247
Score = 24.6 bits (52), Expect = 1.4
Identities = 34/148 (22%), Positives = 61/148 (40%), Gaps = 20/148 (13%)
Query: 23 LALKLEVLDTDMIISERVG---LSVREIFEELGEDNFRMFEK--NLIDELKTL-KTPHVI 76
LA+K++ D +I + + RE + + + F ++I E + +T +
Sbjct: 98 LAIKMKTEDFHHVIENNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSA 157
Query: 77 STGGGIVMHENLKGLG----------TTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAK 126
S GG I M ++ G T +++ D +K + + K LN L AK
Sbjct: 158 SKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKADYVKNIPLNRLGSAK 217
Query: 127 ELFEKRQALYEKNASFI----IDARGGL 150
E+ E L ++S+I + GGL
Sbjct: 218 EVAEAVAFLLSDHSSYITGETLKVNGGL 245
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 24.6 bits (52), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (55%)
Query: 100 DFETLIKRLNQKEREKRPLLNNLTQAKELFEK 131
DF + +N++ E P+LN L QA + +K
Sbjct: 666 DFTHYLLMVNREPNENNPVLNRLIQAVKGMQK 697
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 23.9 bits (50), Expect = 2.3
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 100 DFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKN-------------ASFIIDA 146
DF + +N++ E P+L L QA + +K + K + F D
Sbjct: 746 DFTHYLLMVNREPNENNPVLKRLIQAVKDMQKEKKKGIKKPKLETPSEWGHHYSEFKGDG 805
Query: 147 RGGLNNSLKQVLQFIA 162
G +N LK F+A
Sbjct: 806 LGAINKLLKTKKGFVA 821
>ref|NP_223741.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.9 bits (50), Expect = 2.3
Identities = 24/88 (27%), Positives = 37/88 (41%), Gaps = 28/88 (31%)
Query: 80 GGIVMHENLK---GLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALY 136
GG++ ++ K GLG Y + DF TQAK+ FEK L
Sbjct: 21 GGLMAEQDPKELVGLGAKSYKEQDF---------------------TQAKKYFEKACDLK 59
Query: 137 EKNASF---IIDARG-GLNNSLKQVLQF 160
E + F ++ +G G+ +LK+ F
Sbjct: 60 ENSGCFNLGVLYYQGHGVEKNLKKAASF 87
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 23.9 bits (50), Expect = 2.3
Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 2/49 (4%)
Query: 3 HLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEE 50
H ++IG GSGKS+ L +A L D ++ +R+ GL + F E
Sbjct: 263 HTMIIGSTGSGKSTFISFL-IANLLTKYDMSVVALDRMNGLEIMTDFFE 310
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 23.9 bits (50), Expect = 2.3
Identities = 11/40 (27%), Positives = 22/40 (54%)
Query: 26 KLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLID 65
+L+ +DT +I+ R +FE+ +++ FE+ L D
Sbjct: 507 RLKEIDTKSMINILATFFGRSVFEDADLKDYKNFEEKLTD 546
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 23.9 bits (50), Expect = 2.3
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 11 GSGKSSLAQELGLALKLEVLDTD------MIISERVGLSVREIFEELGEDNFRMFEKNLI 64
G GK L +E+ + + TD +++ G +VR ++ D +R+F +NL+
Sbjct: 51 GLGKGHLTKEVDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLV 110
Query: 65 DELKTLKTPHV 75
L TP++
Sbjct: 111 -----LNTPNL 116
>ref|NP_223578.1| putative [Helicobacter pylori J99]
Length = 381
Score = 23.5 bits (49), Expect = 3.0
Identities = 12/34 (35%), Positives = 17/34 (49%)
Query: 112 EREKRPLLNNLTQAKELFEKRQALYEKNASFIID 145
E+E LN L + ++ALY KN S I+
Sbjct: 279 EKESERFLNKEAVPTGLLDGKKALYAKNLSLEIE 312
>ref|NP_223117.1| putative [Helicobacter pylori J99]
Length = 391
Score = 23.5 bits (49), Expect = 3.0
Identities = 12/28 (42%), Positives = 16/28 (56%)
Query: 3 HLVLIGFMGSGKSSLAQELGLALKLEVL 30
H G G GK+SLAQ + +LK +L
Sbjct: 39 HAFFYGPPGVGKTSLAQIIARSLKRPIL 66
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 23.1 bits (48), Expect = 3.9
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 3 HLVLIGFMGSGKSSLAQELGL-ALKLE 28
H ++IG GSGKS+L L + ALK +
Sbjct: 441 HTLVIGATGSGKSTLISYLMMSALKYQ 467
>ref|NP_224170.1| LEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 806
Score = 22.7 bits (47), Expect = 5.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 102 ETLIKRLNQKEREKRPLLNNLTQAKELFEKRQA 134
E IKR++Q++ + + N TQ + EK+ A
Sbjct: 273 EHAIKRVSQEDSKMIKAILNTTQRERALEKKGA 305
>ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 22.7 bits (47), Expect = 5.1
Identities = 23/77 (29%), Positives = 36/77 (45%), Gaps = 18/77 (23%)
Query: 19 QELGLALKLEV-------LDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLK 71
QELGL K+ + LD + ++V +SV +FE +G+DN + K K
Sbjct: 205 QELGLEDKVTIKLLNYQDLDGRLYRFDKV-VSVG-MFEHVGKDNLPFYFK---------K 253
Query: 72 TPHVISTGGGIVMHENL 88
V+ GG ++H L
Sbjct: 254 VKEVLKRGGMFLLHSIL 270
>ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PRECURSOR [Helicobacter
pylori J99]
Length = 260
Score = 22.7 bits (47), Expect = 5.1
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 27 LEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGGGIVMHE 86
L+ ++ +I + V +++ E D+F M L + K LKT H +GG ++
Sbjct: 151 LDKMEGVLIPAGFVKVTILEPMSGESLDSFTMDLSELDIQEKFLKTTHSSHSGG--LVST 208
Query: 87 NLKGLGTT-----FYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKR 132
+KG + L F ++++ ++ K+ +R L + AKEL KR
Sbjct: 209 MVKGTDNSNDAIKSALNKIFASIMQEMD-KKLTQRNLESYQKDAKELKNKR 258
>ref|NP_223196.1| cag island protein [Helicobacter pylori J99]
Length = 535
Score = 22.7 bits (47), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 80 GGIVMHENLKGLGTTFYLKMDFETLIKRLN 109
GG+ + + L T F LK ET+I+ +N
Sbjct: 470 GGLGIDSTIASLITLFILKGFIETIIESVN 499
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 22.7 bits (47), Expect = 5.1
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 98 KMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNASFI 143
K+D ++L++ +++K+R+ L L + E +Q K+ FI
Sbjct: 71 KIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQQMAKNKSGFFI 116
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 22.7 bits (47), Expect = 5.1
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 42 LSVREIFEELGE---DNFRMFEKNLIDELK 68
L + EI +E+ + D + FE+NL DE+K
Sbjct: 493 LGLAEIHDEVKDQFKDLIKAFEENLKDEIK 522
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 22.3 bits (46), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 102 ETLIKRLNQKEREKRPLLNNLTQAKELFEK 131
ET RL + ERE+R L + K+L E+
Sbjct: 161 ETKFTRLEKLERERRSLEDKKRFQKDLEER 190
>ref|NP_223017.1| putative [Helicobacter pylori J99]
Length = 321
Score = 22.3 bits (46), Expect = 6.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 5 VLIGFMGSGKSSLAQE 20
++ GF+GSGK+S E
Sbjct: 8 LITGFLGSGKTSFLSE 23
>ref|NP_223980.1| putative [Helicobacter pylori J99]
Length = 242
Score = 21.9 bits (45), Expect = 8.8
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 16 SLAQELGLALKLEVLDTDMIISERVGLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHV 75
S+ +G+A LEV+ +I+S V + +I + E ++R +KTL +
Sbjct: 147 SVITAIGIAKHLEVMALAIILSVIVMMFFSKIVGDFIEKHYR---------VKTLAFVFL 197
Query: 76 ISTG-----GGIVMHENLKGLGTTFYLKMDFETLIKRLN 109
+ G G+ +H N L Y + F LI+ LN
Sbjct: 198 LVVGVFLFLEGLHLHINKNYL----YAGIGFALLIECLN 232
>ref|NP_223365.1| putative [Helicobacter pylori J99]
Length = 114
Score = 21.9 bits (45), Expect = 8.8
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 45 REIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGG--GIVMHEN--LKGLGTTFYLKMD 100
+E F + ED +K L E T + PH +S G+++ L L YL +
Sbjct: 11 KERFVRIEEDE----KKELFAEA-TNENPHGLSLMALIGVLVFGGAFLALLVPKIYLSNN 65
Query: 101 FETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALY 136
+ +++N E +KR LL K EK + Y
Sbjct: 66 IYYISRKINTLEDQKRLLLEEQQILKNELEKERFKY 101
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 21.9 bits (45), Expect = 8.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 97 LKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKN 139
LK E L L ++E K L + + KE+F ++ EK+
Sbjct: 530 LKQKNEHLENALKEQEDLKNAWLLEMEKQKEIFHHKKLELEKS 572
>ref|NP_223229.1| putative [Helicobacter pylori J99]
Length = 81
Score = 21.9 bits (45), Expect = 8.8
Identities = 13/51 (25%), Positives = 23/51 (44%), Gaps = 6/51 (11%)
Query: 82 IVMHENLKGLGTTFYLKMDFETLIKRLNQKERE------KRPLLNNLTQAK 126
+ + E + TFYL + +++RL +E E KR +L + K
Sbjct: 15 VAVDELKRNFSVTFYLSKEEHDVLRRLADEEVESVNSFVKRHILKTIIYKK 65
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 21.9 bits (45), Expect = 8.8
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 62 NLIDELKTLKTPHVISTGGGIVMHENLKGLGTTFYLKMDFETLIKRLNQKE 112
NL D +KTL ++ T + ++++ L F+L++ + ++ +E
Sbjct: 390 NLADVIKTLFNLGLMVTKNDFLDKDSIEILAEEFHLEISVQNTLEEFEVEE 440
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 21.9 bits (45), Expect = 8.8
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 9/44 (20%)
Query: 1 MQHLVLIGFMGSGKSSLAQELGLA---------LKLEVLDTDMI 35
+ HL++ G GSGKS + L+ LKL ++D M+
Sbjct: 528 LPHLLIAGTTGSGKSVGVNAMILSLLYKNPPDQLKLVMIDPKMV 571
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.139 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,514
Number of Sequences: 1491
Number of extensions: 7874
Number of successful extensions: 54
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 37
length of query: 162
length of database: 494,079
effective HSP length: 71
effective length of query: 91
effective length of database: 388,218
effective search space: 35327838
effective search space used: 35327838
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)