BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646164|ref|NP_208348.1| flagellar basal-body
protein (fliE) [Helicobacter pylori 26695]
(109 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224183.1| FLAGELLAR HOOK-BASAL BODY COMPLEX PROTEIN ... 210 6e-57
ref|NP_222772.1| putative [Helicobacter pylori J99] 27 0.17
ref|NP_222777.1| putative [Helicobacter pylori J99] 25 0.38
ref|NP_223790.1| putative [Helicobacter pylori J99] 25 0.50
ref|NP_223560.1| putative [Helicobacter pylori J99] 24 0.85
ref|NP_222796.1| putative [Helicobacter pylori J99] 23 1.9
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 23 2.5
ref|NP_223250.1| ENDONUCLEASE III [Helicobacter pylori J99] 23 2.5
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 22 3.2
ref|NP_222954.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_224145.1| arginase [Helicobacter pylori J99] 22 4.2
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 22 5.5
ref|NP_223388.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223010.1| putative [Helicobacter pylori J99] 22 5.5
ref|NP_223773.1| putative [Helicobacter pylori J99] 21 7.2
ref|NP_223353.1| short-chain fatty acids transporter [Helic... 21 7.2
ref|NP_224041.1| putative [Helicobacter pylori J99] 21 9.4
ref|NP_223446.1| putative [Helicobacter pylori J99] 21 9.4
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 21 9.4
>ref|NP_224183.1| FLAGELLAR HOOK-BASAL BODY COMPLEX PROTEIN [Helicobacter pylori J99]
Length = 109
Score = 210 bits (535), Expect = 6e-57
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MQAIHNDKSLLSPFSELNTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDK 60
MQAIHNDKSLLSPFSELNTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDK
Sbjct: 1 MQAIHNDKSLLSPFSELNTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDK 60
Query: 61 ALADMATGQIKDLHQAAIAIGKAETSMKLMLEVRNKAISAYKELLRTQI 109
ALADMATGQIKDLHQAAIAIGKAETSMKLMLEVRNKAISAYKELLRTQI
Sbjct: 61 ALADMATGQIKDLHQAAIAIGKAETSMKLMLEVRNKAISAYKELLRTQI 109
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 26.6 bits (57), Expect = 0.17
Identities = 23/107 (21%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 2 QAIHNDKSLLSPFSELNTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDKA 61
+ + +K+L + L +N+ + + KE+ L++ +NEL N+++ +
Sbjct: 34 ELVEENKALTTEKERLERENKNLTADKENLTKEKTE------LQKQVNELKNSKQVLENE 87
Query: 62 LADMATGQIKDLHQAAIAIGKAETSMKLMLEVRNKAISAYKELLRTQ 108
AD + ++L + + K +T L +NK ++ KE L T+
Sbjct: 88 KADWLR-EKENLTKDRENLTKEKTE----LTEKNKVLTTEKERLATE 129
>ref|NP_222777.1| putative [Helicobacter pylori J99]
Length = 78
Score = 25.4 bits (54), Expect = 0.38
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 58 SDKALADMATGQIKDLHQAAIAIGKAE 84
SDKALA+ T IKD +IA+ + E
Sbjct: 19 SDKALANTNTLDIKDTQMISIALEEVE 45
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 25.0 bits (53), Expect = 0.50
Identities = 22/93 (23%), Positives = 41/93 (43%), Gaps = 5/93 (5%)
Query: 13 PFSELNTDNRTKREESGSTFKEQKGGEFSKLLKQS--INELNN--TQEQSDKALADMATG 68
PF+E+ ++ ++E +KE+ E+ + + +S I N+ Q+ K
Sbjct: 88 PFTEVEPRIKSNKKEELEEYKEKNPKEYEEKVNKSGIIQSFNHAIAQQNQVKLRVGRVRF 147
Query: 69 QIKDLHQAAIAIGKAETSMKL-MLEVRNKAISA 100
KD+ + G E + + LE+R K I A
Sbjct: 148 MFKDMPKDQRVHGGLEAEILIPHLELRQKQIDA 180
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 24.3 bits (51), Expect = 0.85
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 18 NTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDKALADMATGQIKDLHQAA 77
NT K ++ ST ++ F++ LKQ I E + L K+L +
Sbjct: 370 NTQASDKTSDNKSTTPKETIRHFTQQLKQEIQEYKPPMSKISMDLFP------KELGKVE 423
Query: 78 IAIGKAETSMKLMLEVRNKAISAY 101
+ I K ++K+ + N ++ +
Sbjct: 424 VTIQKVGKNLKVSVISHNNSLQTF 447
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 23.1 bits (48), Expect = 1.9
Identities = 10/29 (34%), Positives = 18/29 (61%)
Query: 68 GQIKDLHQAAIAIGKAETSMKLMLEVRNK 96
GQIK++ Q + K ++ + +EVR+K
Sbjct: 330 GQIKEMKQDGASPNKIDSVVNKAMEVRDK 358
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 22.7 bits (47), Expect = 2.5
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 62 LADMATGQIKDLHQAAIAIGKAETSMKLM 90
++D+ + KD+H+A + +G + L+
Sbjct: 401 ISDIGSNTAKDIHEALMLLGNGDLKSALI 429
>ref|NP_223250.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 214
Score = 22.7 bits (47), Expect = 2.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 53 NTQEQSDKALADMATGQIKDLHQAAIAIGK 82
NT ++++ L+D+ + LH A I G+
Sbjct: 158 NTPIKTEEELSDLFKDNLSKLHHALILFGR 187
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 22.3 bits (46), Expect = 3.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 17 LNTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDKALADM 65
LN R K S F + E +KL L NTQE +DK + ++
Sbjct: 240 LNDKGRLKH--SVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEI 286
>ref|NP_222954.1| putative [Helicobacter pylori J99]
Length = 362
Score = 22.3 bits (46), Expect = 3.2
Identities = 9/43 (20%), Positives = 26/43 (59%)
Query: 44 LKQSINELNNTQEQSDKALADMATGQIKDLHQAAIAIGKAETS 86
+K+ I ++ +++S++ ++ + + QAA+A G+A+ +
Sbjct: 234 IKEQIEKVQIARQESERVKYEVERSKQEAQKQAALAKGEADAN 276
>ref|NP_224145.1| arginase [Helicobacter pylori J99]
Length = 322
Score = 21.9 bits (45), Expect = 4.2
Identities = 10/64 (15%), Positives = 27/64 (41%)
Query: 2 QAIHNDKSLLSPFSELNTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDKA 61
+++H DK + + + + D T + G ++ N +N ++E++ +
Sbjct: 102 RSVHKDKKIGILYLDAHADIHTAYDSDSKHIHGMPLGMVLNRVRSGFNRMNESEEKAWQK 161
Query: 62 LADM 65
L +
Sbjct: 162 LCSL 165
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 21.6 bits (44), Expect = 5.5
Identities = 9/26 (34%), Positives = 16/26 (60%)
Query: 25 REESGSTFKEQKGGEFSKLLKQSINE 50
+E +GS+F GG F +L+ +N+
Sbjct: 19 KELTGSSFVFATGGHFVELVNIEVNK 44
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 21.6 bits (44), Expect = 5.5
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 21 NRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSD 59
N R+E F ++ F KL ++S+ EL + + +
Sbjct: 25 NADGRDEKLKRFNQEALEVFQKLERESLKELESLKNNEE 63
>ref|NP_223010.1| putative [Helicobacter pylori J99]
Length = 184
Score = 21.6 bits (44), Expect = 5.5
Identities = 8/23 (34%), Positives = 16/23 (68%)
Query: 80 IGKAETSMKLMLEVRNKAISAYK 102
+GK++ S+K +LE N ++ + K
Sbjct: 51 LGKSQDSLKTLLEGANASMDSLK 73
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 21.2 bits (43), Expect = 7.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 33 KEQKGGEFSKLLKQSINELNNTQEQSDK 60
KE+ E + L+ + LN+ QE++DK
Sbjct: 79 KEEPKEEPEESLEDIFSSLNDFQEKTDK 106
>ref|NP_223353.1| short-chain fatty acids transporter [Helicobacter pylori J99]
Length = 454
Score = 21.2 bits (43), Expect = 7.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 41 SKLLKQSINELNNTQEQSDKALA 63
SKLLK E Q DK +A
Sbjct: 224 SKLLKDEYKETELISHQQDKTIA 246
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 20.8 bits (42), Expect = 9.4
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 18 NTDNRTKREESGSTFKEQKGGEFSKLLKQSINELNNTQEQSDKA 61
N +N E+ E + G F + + N Q+ ++ +
Sbjct: 7 NNENHENSSENSKDHHEARAGAFERFTNRKKRFRENAQKNAESS 50
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 20.8 bits (42), Expect = 9.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 39 EFSKLLKQSINELNNTQEQSDKA 61
E KLLKQ++ N + +KA
Sbjct: 453 EAQKLLKQAVERFNLSMRSVNKA 475
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 20.8 bits (42), Expect = 9.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 12 SPFSELNTDNRTKREESGSTFKEQKGGEFSKLLKQSI 48
S ++++NT+N+ +E F E F +L +I
Sbjct: 184 SYYTDINTENQAIKEGVNKVFNENTTKLFLWILTATI 220
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.308 0.123 0.311
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,859
Number of Sequences: 1491
Number of extensions: 4051
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 109
length of database: 494,079
effective HSP length: 66
effective length of query: 43
effective length of database: 395,673
effective search space: 17013939
effective search space used: 17013939
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 42 (20.8 bits)