BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646165|ref|NP_208349.1| flagellar basal-body rod
protein (flgC) (proximal rod protein) [Helicobacter pylori 26695]
(161 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224184.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 310 2e-86
ref|NP_224210.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL R... 40 2e-05
ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 28 0.093
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 28 0.093
ref|NP_223522.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylor... 25 0.78
ref|NP_223579.1| stress protein [Helicobacter pylori J99] 25 1.3
ref|NP_223560.1| putative [Helicobacter pylori J99] 24 2.3
ref|NP_223783.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 23 3.0
ref|NP_223052.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 23 3.0
ref|NP_223902.1| NADH oxidoreductase I [Helicobacter pylori... 23 3.9
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 23 3.9
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 23 3.9
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 23 5.1
ref|NP_223725.1| putative outer membrane protein [Helicobac... 22 6.6
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 22 6.6
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 22 8.7
>ref|NP_224184.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 161
Score = 310 bits (793), Expect = 2e-86
Identities = 156/161 (96%), Positives = 158/161 (97%)
Query: 1 MFLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKAFDFNEILNQK 60
MFLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVF+AFDFNEILNQK
Sbjct: 1 MFLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAFDFNEILNQK 60
Query: 61 IAQNNQITPYEDPLDEGDEYPLIPITSVVVDKIVRDDSEPLMKYDPSHPDANAQGYVAYP 120
IAQNNQI PYEDPLDEGD+ PLIPITSVVVDKI RDDSEPLMKYDPSHPDANAQGYVAYP
Sbjct: 61 IAQNNQIIPYEDPLDEGDDNPLIPITSVVVDKIARDDSEPLMKYDPSHPDANAQGYVAYP 120
Query: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQT 161
NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQT
Sbjct: 121 NVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGMLQT 161
>ref|NP_224210.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL ROD PROTEIN) [Helicobacter
pylori J99]
Length = 262
Score = 40.4 bits (93), Expect = 2e-05
Identities = 29/73 (39%), Positives = 38/73 (51%), Gaps = 9/73 (12%)
Query: 82 LIPITSVVVDKIVRD-DSEPLMKYDPSHPDANAQGYVAYPNVNAVVEMADLVEATRAYQA 140
L IT+ D IV + DS+ L K QG++ NV V EM DL+ A RAY+A
Sbjct: 191 LFSITNASGDAIVGNPDSQGLGKL--------RQGFLELSNVRLVEEMTDLITAQRAYEA 242
Query: 141 NVAAFQSAKNMAQ 153
N + Q+A M Q
Sbjct: 243 NSKSIQTADAMLQ 255
Score = 25.8 bits (55), Expect = 0.60
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 11/48 (22%)
Query: 12 GLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKAFDFNEILNQ 59
G+ AQ+ + S+NIAN NTT +++ A DFN++ Q
Sbjct: 11 GMLAQQTHIDTTSNNIANVNTT------GFKKSRA-----DFNDLFYQ 47
>ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 140
Score = 28.5 bits (62), Expect = 0.093
Identities = 20/62 (32%), Positives = 31/62 (49%), Gaps = 11/62 (17%)
Query: 2 FLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKAFDFNEILNQKI 61
F +F + L + LR ++I+SNIAN +T P+ R K DF +L +K
Sbjct: 3 FSKAFGLVYKALDYRALRQDMIASNIANVDT-------PFYRP----KDLDFESVLAEKK 51
Query: 62 AQ 63
A+
Sbjct: 52 AE 53
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 28.5 bits (62), Expect = 0.093
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 116 YVAYPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAIGM 158
Y+ NVNA + +L+ R Y N AF + +M + AI +
Sbjct: 561 YLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISL 603
>ref|NP_223522.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylori J99]
Length = 718
Score = 25.4 bits (54), Expect = 0.78
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 12 GLSAQRLRANLISSNIANANTT 33
G+ A ++ ++ S+NIAN NTT
Sbjct: 11 GMQAHQIALDIESNNIANVNTT 32
>ref|NP_223579.1| stress protein [Helicobacter pylori J99]
Length = 310
Score = 24.6 bits (52), Expect = 1.3
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 69 PYEDPLDEG--DEYPLIPITSVVVDKIVRDDSEPLMKYDPSH 108
PY + G + LI +TS +++++ RD+ + ++ ++ SH
Sbjct: 129 PYMNAFASGWDESNSLIALTSALIERLDRDELKAVIAHELSH 170
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 23.9 bits (50), Expect = 2.3
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 52 DFNEILNQKIAQNNQITPYEDP 73
DF++ILNQKI++ ++ P E P
Sbjct: 36 DFSKILNQKISK-DKTAPKESP 56
>ref|NP_223783.1| putative [Helicobacter pylori J99]
Length = 290
Score = 23.5 bits (49), Expect = 3.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 127 EMADLVEATRAYQANVAAFQSAKNMAQNAI 156
E++ +V+ +RA+ AN+ + + QNA+
Sbjct: 150 ELSKIVKKSRAHVANIMRLLTLSSKVQNAL 179
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 23.5 bits (49), Expect = 3.0
Identities = 11/38 (28%), Positives = 20/38 (51%)
Query: 119 YPNVNAVVEMADLVEATRAYQANVAAFQSAKNMAQNAI 156
Y NA+V + V + + ++ F+S KN+ + AI
Sbjct: 211 YQPKNAIVLVVGDVNSQKVFELTKKHFESLKNLDEKAI 248
>ref|NP_223052.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 269
Score = 23.5 bits (49), Expect = 3.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 107 SHPDANAQGYVAYPNVNAVVEMADLVEATR 136
S A Q + NVNAV EM+ L+E R
Sbjct: 212 SDSGALRQSMLEKSNVNAVREMSTLIEINR 241
>ref|NP_223902.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 409
Score = 23.1 bits (48), Expect = 3.9
Identities = 6/19 (31%), Positives = 13/19 (67%)
Query: 96 DDSEPLMKYDPSHPDANAQ 114
DD++ ++ + P HP ++ Q
Sbjct: 20 DDNQMILNFGPQHPSSHGQ 38
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 23.1 bits (48), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 11 YGLSAQRLRANLISSNIANANTTRT 35
Y SAQR+ ++IS N NA+ T
Sbjct: 189 YSQSAQRIAKSVISENKQNASFEHT 213
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 23.1 bits (48), Expect = 3.9
Identities = 18/68 (26%), Positives = 26/68 (37%), Gaps = 13/68 (19%)
Query: 5 SFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKAFDFNEILNQKIAQN 64
+F +S S L SN+ N NTTRT + N +N + N
Sbjct: 11 AFSVSMAEKSGAFLGGGFQYSNLENQNTTRTPSA-------------NNNTPINTSMFGN 57
Query: 65 NQITPYED 72
NQ P ++
Sbjct: 58 NQAAPAQE 65
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 22.7 bits (47), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 3 LSSFDISGYGLSAQRLRANLISSNIANAN 31
LSS + S GL A + ++ +NI+NA+
Sbjct: 5 LSSLNTSYTGLQAHQSMVDVTGNNISNAS 33
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 22.3 bits (46), Expect = 6.6
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 12 GLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFKA 50
GL+AQ +++S+ N +TT T+ YR F++
Sbjct: 556 GLNAQNFATSMVSAIAQNFSTTSTT---TYRSSSKNFRS 591
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 22.3 bits (46), Expect = 6.6
Identities = 11/52 (21%), Positives = 25/52 (47%)
Query: 21 NLISSNIANANTTRTSEGGPYRRQEAVFKAFDFNEILNQKIAQNNQITPYED 72
N+I N N + + E F +F EI+ +K+++ ++ + Y++
Sbjct: 787 NIIEENRLNEEKAYSFMQHAFSGGEINFSGTEFPEIIEEKVSRFDKNSRYQE 838
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 21.9 bits (45), Expect = 8.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 10 GYGLSAQRLRANLISSNIANANTTRTSEGGPY 41
G + +L++ ++SS+ A N+ +EGG +
Sbjct: 702 GISVPLVQLKSRIVSSDGAYTNSITLNEGGSH 733
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,946
Number of Sequences: 1491
Number of extensions: 6267
Number of successful extensions: 26
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 20
length of query: 161
length of database: 494,079
effective HSP length: 71
effective length of query: 90
effective length of database: 388,218
effective search space: 34939620
effective search space used: 34939620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)