BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646166|ref|NP_208350.1| flagellar basal-body rod
protein (flgB) (proximal rod protein) [Helicobacter pylori 26695]
(140 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 269 2e-74
ref|NP_224184.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicoba... 28 0.13
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 28 0.13
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 28 0.13
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 27 0.21
ref|NP_223645.1| putative [Helicobacter pylori J99] 26 0.37
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 25 0.81
ref|NP_224210.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL R... 23 3.1
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 23 4.0
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 4.0
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 23 4.0
ref|NP_224029.1| lipopolysaccharide biosynthesis protein [H... 22 5.3
ref|NP_223522.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylor... 22 6.9
ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 22 9.0
ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicoba... 22 9.0
ref|NP_222756.1| DNA transformation competancy [Helicobacte... 22 9.0
>ref|NP_224185.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 140
Score = 269 bits (688), Expect = 2e-74
Identities = 134/140 (95%), Positives = 138/140 (97%)
Query: 1 MDFSKAFGLVYKALDYRSLRQDMIASNIANVDTPFYRPKDLDFESVLAKKKAEIFENQSS 60
MDFSKAFGLVYKALDYR+LRQDMIASNIANVDTPFYRPKDLDFESVLA+KKAEIFENQS
Sbjct: 1 MDFSKAFGLVYKALDYRALRQDMIASNIANVDTPFYRPKDLDFESVLAEKKAEIFENQSG 60
Query: 61 KVLPLAHTNPRHLDFENSAKDGASLFFRDGHLAKNDGNSVDLDIETSEMGKNSTMYLALS 120
KVLPLAHTNPRHLDFENS K+GASLFFRDGHLAKNDGNSVDLDIETSEMGKNSTMYLALS
Sbjct: 61 KVLPLAHTNPRHLDFENSTKNGASLFFRDGHLAKNDGNSVDLDIETSEMGKNSTMYLALS 120
Query: 121 SALKKYRGVINYAIDSSKNL 140
SALKKYRG+INYAIDSSKNL
Sbjct: 121 SALKKYRGMINYAIDSSKNL 140
>ref|NP_224184.1| FLAGELLAR BASAL-BODY ROD PROTEIN [Helicobacter pylori J99]
Length = 161
Score = 27.7 bits (60), Expect = 0.13
Identities = 21/73 (28%), Positives = 37/73 (49%), Gaps = 16/73 (21%)
Query: 3 FSKAFGLVYKALDYRSLRQDMIASNIANVDT-------PFYRP----KDLDFESVLAKKK 51
F +F + L + LR ++I+SNIAN +T P+ R + DF +L +K
Sbjct: 2 FLSSFDISGYGLSAQRLRANLISSNIANANTTRTSEGGPYRRQEAVFRAFDFNEILNQKI 61
Query: 52 AEIFENQSSKVLP 64
A Q+++++P
Sbjct: 62 A-----QNNQIIP 69
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter
pylori J99]
Length = 605
Score = 27.7 bits (60), Expect = 0.13
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 11 YKALDYRSLRQDMIASNIANVDTPFYRPKDLDFESVLA 48
Y + D +++NIANV+T YR D +F+++ +
Sbjct: 9 YSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFS 46
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 27.7 bits (60), Expect = 0.13
Identities = 18/53 (33%), Positives = 23/53 (42%), Gaps = 16/53 (30%)
Query: 29 ANVDTPFYRPKDLDFESVL----------------AKKKAEIFENQSSKVLPL 65
A +DTP Y P + FE L KK +IF+NQ SK + L
Sbjct: 293 AKIDTPLYSPIKIAFEKALKNAKDSVFIASSYFIPGKKIMKIFKNQISKGIEL 345
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 26.9 bits (58), Expect = 0.21
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 53 EIFENQSSKVLPLAHTNPRHLDFENSAKDGASLFFRDGHLAKNDGNSVDL--DIETSEMG 110
EIF+N T P H + DGA FF + L D N + ++++
Sbjct: 428 EIFQN----------TAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLTSTDIL 477
Query: 111 KNSTMYLALSSALKKYRGVINYA 133
K +Y+A A V N A
Sbjct: 478 KGKKIYIATKVAKDGQTAVCNLA 500
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 26.2 bits (56), Expect = 0.37
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 2 DFSKAFGLVYKALDYRSLRQDMIASNIANVDTPFYR---PKDLDFESV-----LAKKKAE 53
+F K FG + + + + +RQD+ + + ++ F + P+ +++ AKK
Sbjct: 985 EFVKKFGYLNENKNRKDIRQDLYGAKVLGLEKDFEKEITPRSAKMQNIEPRQAQAKKAQI 1044
Query: 54 IFENQSSKVLPLAHTNPRH-LDFENSAKDGASLFFRDGH 91
FE + L TN + L + K G L F H
Sbjct: 1045 FFERTLNPKKELIITNAKEALIASINQKGGLDLHFIRDH 1083
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 25.0 bits (53), Expect = 0.81
Identities = 17/43 (39%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
Query: 95 NDGNSVDLDIETSEMGKNSTMYLALSSALKKYRGVINYAIDSS 137
N G+ V L S MGK S M + SAL RGV ++++ S
Sbjct: 194 NQGSLVILGARPS-MGKTSLMMNMVLSALNDDRGVAVFSLEMS 235
>ref|NP_224210.1| FLAGELLAR BASAL-BODY ROD PROTEIN (DISTAL ROD PROTEIN)
[Helicobacter pylori J99]
Length = 262
Score = 23.1 bits (48), Expect = 3.1
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 22 DMIASNIANVDTPFYRPKDLDFESVLAKKKAEIFENQSSKVL 63
D ++NIANV+T ++ DF + + N S+ L
Sbjct: 20 DTTSNNIANVNTTGFKKSRADFNDLFYQAMQYAGTNTSNTTL 61
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 22.7 bits (47), Expect = 4.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 104 IETSEMGKNSTMYLALSSALKKYRGVINYAIDSSKNL 140
+ +SE +T Y + +AL + +G A++SSKN+
Sbjct: 177 LSSSEYQVLNTAYQTIQTALNQNQGGGMPALNSSKNM 213
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 22.7 bits (47), Expect = 4.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 22 DMIASNIANVDTPFYRPK 39
D+ ASN N D P+Y K
Sbjct: 609 DLSASNYINADMPWYNHK 626
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 22.7 bits (47), Expect = 4.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 104 IETSEMGKNSTMYLALSSALKKYRGVINYAIDSSKNL 140
+ +SE +T Y + +AL + +G A++SSKN+
Sbjct: 177 LSSSEYQVLNTAYQTIQTALNQNQGGGMPALNSSKNM 213
>ref|NP_224029.1| lipopolysaccharide biosynthesis protein [Helicobacter pylori J99]
Length = 367
Score = 22.3 bits (46), Expect = 5.3
Identities = 10/39 (25%), Positives = 20/39 (50%)
Query: 92 LAKNDGNSVDLDIETSEMGKNSTMYLALSSALKKYRGVI 130
L N + +D++T +G ++ Y AL + K G++
Sbjct: 129 LFPNYSKIISIDVDTVFLGDVASAYFALDNEPTKLLGMV 167
>ref|NP_223522.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylori J99]
Length = 718
Score = 21.9 bits (45), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 22 DMIASNIANVDTPFYRPKDLDFESVLAKKK 51
D+ ++NIANV+T ++ F +L++ K
Sbjct: 20 DIESNNIANVNTTGFKYSRASFVDMLSQVK 49
>ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 624
Score = 21.6 bits (44), Expect = 9.0
Identities = 7/18 (38%), Positives = 12/18 (65%)
Query: 22 DMIASNIANVDTPFYRPK 39
D++ + IAN T ++ PK
Sbjct: 88 DILVNKIANAGTAYFMPK 105
>ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicobacter pylori J99]
Length = 167
Score = 21.6 bits (44), Expect = 9.0
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 50 KKAEIFENQSSKVLPLAHTNPRHLDFENSAKDGASLFFRDGHLAKNDGNSVDLDIETSE 108
KK IF N+++ + L + FE + + + H++++ N VD I++ +
Sbjct: 55 KKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISESINNIVDHAIKSKD 113
>ref|NP_222756.1| DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 21.6 bits (44), Expect = 9.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 62 VLPLAHTNPRHLDFENSAKDGASLFFRDGHLAKND 96
+LPL T +DF N K A + D ++ N+
Sbjct: 74 ILPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNE 108
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.132 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,983
Number of Sequences: 1491
Number of extensions: 6536
Number of successful extensions: 31
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 16
length of query: 140
length of database: 494,079
effective HSP length: 69
effective length of query: 71
effective length of database: 391,200
effective search space: 27775200
effective search space used: 27775200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 44 (21.6 bits)