BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646170|ref|NP_208354.1| alkyl hydroperoxide
reductase (tsaA) [Helicobacter pylori 26695]
         (198 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_224189.1|  putative peroxidase [Helicobacter pylori J99]   400  e-113
ref|NP_222845.1|  BACTERIOFERRITIN COMIGRATORY PROTEIN [Heli...    43  7e-06
ref|NP_224037.1|  putative [Helicobacter pylori J99]               26  0.83
ref|NP_223430.1|  GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH...    25  1.4
ref|NP_223380.1|  putative Outer membrane protein [Helicobac...    24  2.4
ref|NP_223685.1|  CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [H...    23  4.1
ref|NP_223377.1|  putative Outer membrane protein [Helicobac...    23  5.4
ref|NP_223567.1|  Outer membrane protein/porin [Helicobacter...    23  7.0

>ref|NP_224189.1| putative peroxidase [Helicobacter pylori J99]
          Length = 198

 Score =  400 bits (1027), Expect = e-113
 Identities = 195/198 (98%), Positives = 196/198 (98%)

Query: 1   MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRV 60
           MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNG ILFFWPKDFTFVCPTEIIAFDKRV
Sbjct: 1   MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRV 60

Query: 61  KDFQEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVTFPMVADITKSISRDYDVLFEEA 120
           KDF EKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQV+FPMVADITKSISRDYDVLFEEA
Sbjct: 61  KDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEA 120

Query: 121 IALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGM 180
           IALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGM
Sbjct: 121 IALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGM 180

Query: 181 KATHQGVAEYLKENSIKL 198
           KATHQGVAEYLKENSIKL
Sbjct: 181 KATHQGVAEYLKENSIKL 198



>ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Helicobacter pylori J99]
          Length = 152

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 30/80 (37%), Positives = 44/80 (54%), Gaps = 8/80 (10%)

Query: 3  VTKLAPDFKAPAVLGNNEVDEHFELS-KNLGKNGAILFFWPKDFTFVCPTEIIAFDKRVK 61
          V +LAPDF+    L N++     E+S K+L     +L+F+PKD T  C  E   F     
Sbjct: 6  VGQLAPDFR----LKNSD---GVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFS 58

Query: 62 DFQEKGFNVIGVSIDSEQVH 81
          +F++K   V+GVS D+ Q H
Sbjct: 59 EFEKKNAVVVGVSPDNSQSH 78



>ref|NP_224037.1| putative [Helicobacter pylori J99]
          Length = 206

 Score = 25.8 bits (55), Expect = 0.83
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 160 LHFEEHGEVCPAGWRKGDKGMKATHQGVAEYLKEN-SIKL 198
           ++    G+     WRK D+G+ A H    E LKEN  IKL
Sbjct: 30  MYIAHQGQSVRTYWRKVDRGVVAKHN---ETLKENPKIKL 66



>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
           [Helicobacter pylori J99]
          Length = 776

 Score = 25.0 bits (53), Expect = 1.4
 Identities = 14/39 (35%), Positives = 19/39 (47%)

Query: 19  NEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFD 57
           N+  E +EL+KN      I+ F P   T+  P   IA D
Sbjct: 400 NDPKEFYELAKNDLYREDIVVFSPHGDTYTLPVGAIALD 438



>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 651

 Score = 24.3 bits (51), Expect = 2.4
 Identities = 12/41 (29%), Positives = 21/41 (50%)

Query: 153 LRMVDALLHFEEHGEVCPAGWRKGDKGMKATHQGVAEYLKE 193
           L +  +LLH E++G    AG++ G+      + G  + L E
Sbjct: 11  LSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLNE 51



>ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [Helicobacter pylori J99]
          Length = 389

 Score = 23.5 bits (49), Expect = 4.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 60  VKDFQEKGFNVIGVSIDSEQ 79
           +K  QE G  V+G++I SEQ
Sbjct: 177 IKAAQEYGAEVMGITISSEQ 196



>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 638

 Score = 23.1 bits (48), Expect = 5.4
 Identities = 11/41 (26%), Positives = 21/41 (50%)

Query: 153 LRMVDALLHFEEHGEVCPAGWRKGDKGMKATHQGVAEYLKE 193
           L +  +LLH E++G    AG++ G+      + G  + L +
Sbjct: 11  LSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLND 51



>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
          Length = 527

 Score = 22.7 bits (47), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (50%)

Query: 4   TKLAPDFKAPAVLGNNEVDEHFELSKNLGKN 34
           T  +P F+    L N  VD    LS+N+ KN
Sbjct: 140 TNNSPCFQGNLALYNEMVDSIKTLSQNISKN 170



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.321    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,802
Number of Sequences: 1491
Number of extensions: 9784
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 8
length of query: 198
length of database: 494,079
effective HSP length: 73
effective length of query: 125
effective length of database: 385,236
effective search space: 48154500
effective search space used: 48154500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)