BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646173|ref|NP_208357.1| hypothetical protein
[Helicobacter pylori 26695]
(147 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224192.1| putative [Helicobacter pylori J99] 278 3e-77
ref|NP_222852.1| putative [Helicobacter pylori J99] 30 0.036
ref|NP_224030.1| putative [Helicobacter pylori J99] 28 0.080
ref|NP_222755.1| putative [Helicobacter pylori J99] 28 0.080
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 28 0.10
ref|NP_222881.1| putative [Helicobacter pylori J99] 27 0.30
ref|NP_223127.1| putative [Helicobacter pylori J99] 26 0.39
ref|NP_224097.1| putative [Helicobacter pylori J99] 25 0.88
ref|NP_223535.1| putative [Helicobacter pylori J99] 24 1.5
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 24 1.5
ref|NP_223104.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [He... 23 4.4
ref|NP_223483.1| putative lipopolysaccharide biosynthesis p... 23 4.4
ref|NP_222994.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_222736.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori... 22 5.7
ref|NP_223788.1| putative [Helicobacter pylori J99] 22 5.7
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 22 7.4
ref|NP_222967.1| putative [Helicobacter pylori J99] 22 7.4
ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter ... 22 7.4
ref|NP_224109.1| putative [Helicobacter pylori J99] 22 9.7
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 22 9.7
ref|NP_223686.1| putative [Helicobacter pylori J99] 22 9.7
ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter ... 22 9.7
>ref|NP_224192.1| putative [Helicobacter pylori J99]
Length = 147
Score = 278 bits (712), Expect = 3e-77
Identities = 135/147 (91%), Positives = 137/147 (92%)
Query: 1 MLSLKQDSFFFLCLGILGFYFYSLLRDLMPFLPPMIGFLFLFYAKKYDHFLPSLSVFGCL 60
MLSLKQDSFFFLCLGI GFYFYSLLRDLMPFLPPM+GFLFLFYAKKYDHFLPSLSVFGCL
Sbjct: 1 MLSLKQDSFFFLCLGIFGFYFYSLLRDLMPFLPPMLGFLFLFYAKKYDHFLPSLSVFGCL 60
Query: 61 FWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLFKTLHVFLVYYLYLSRFFSMSL 120
FWFESMHLKTLGVLALLFLIYHQI YKNSLK FNDGFLFKTLH FLVYYLYLS FFS+SL
Sbjct: 61 FWFESMHLKTLGVLALLFLIYHQIVYKNSLKFFNDGFLFKTLHAFLVYYLYLSCFFSVSL 120
Query: 121 SLKILGFLALFALIESALWGLYEKSSL 147
LK LG ALFALIE ALWGLYEKSSL
Sbjct: 121 GLKTLGLFALFALIEGALWGLYEKSSL 147
>ref|NP_222852.1| putative [Helicobacter pylori J99]
Length = 482
Score = 29.6 bits (65), Expect = 0.036
Identities = 33/130 (25%), Positives = 56/130 (42%), Gaps = 5/130 (3%)
Query: 14 LGILGFYFYSLLRDLMPFLPPMIGFLFLFYAK--KYDHFLPSLSVFGCLFWFESMHLKTL 71
L +LG+ F L L +I + + + K Y+ + + S F S+
Sbjct: 284 LALLGWIFGKSL-GLHASATALIVMVLMAFCKIVSYEDIIKNKSAFNIFLLLGSLLTMAG 342
Query: 72 GVLALLFLIYHQIAYKNSLKLFNDGFLFKTLHVFLVYYLYLSRFFSMSLSLKILGFLALF 131
G+ + FL + A +N L+ + L L F+V YLS +F S++ + ALF
Sbjct: 343 GLKNVGFLNFIGNAAQNFLEHAHLDPLIAVL--FIVALFYLSHYFFASITAHVSALFALF 400
Query: 132 ALIESALWGL 141
I S + G+
Sbjct: 401 VGIGSHIQGV 410
>ref|NP_224030.1| putative [Helicobacter pylori J99]
Length = 553
Score = 28.5 bits (62), Expect = 0.080
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 70 TLGVLALLFLIYHQI--AYKNS-LKLFNDGFLFKTLHVFLVYY---LYLSRFFSMSLSLK 123
TL L+FL+ + + AYKNS L F+ GFL L F+VYY L + SL
Sbjct: 12 TLDEKFLMFLLCNALSNAYKNSDLFSFSKGFLGAFLIGFVVYYGCALIPKKRLKYSLEWL 71
Query: 124 ILGFLALFALIE 135
+G +F++ E
Sbjct: 72 FIGSGIIFSVAE 83
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 28.5 bits (62), Expect = 0.080
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 60 LFWFESMHLKTLGVLALLFL--IYHQIAYKNSLKLFNDGFLFKTLHVFLVYYLYLSRFFS 117
L WF + LG A FL ++ Q+ + +++ L F +++L FFS
Sbjct: 10 LSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKE--------QNFFS 61
Query: 118 MSLSLKILGFLALFALIESAL 138
S L+ L F+ FAL AL
Sbjct: 62 ASALLEALWFVGFFALFNYAL 82
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 28.1 bits (61), Expect = 0.10
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 28 LMPFLPPMIGF-LFLFYAKKYDHFLPSLSVFGCLFWFESMHLKTLGVLALLF-------L 79
L FL +GF +F + + +H L++ G L WF+S L + L LF L
Sbjct: 147 LKVFLAFFLGFFIFSLFLGELNH-AALLNLQGQLLWFKSKALWLISSLLFLFFVLAFVDL 205
Query: 80 IYHQIAYKNSLKL 92
I + Y NSLK+
Sbjct: 206 IIKRRQYTNSLKM 218
>ref|NP_222881.1| putative [Helicobacter pylori J99]
Length = 242
Score = 26.6 bits (57), Expect = 0.30
Identities = 22/74 (29%), Positives = 36/74 (47%), Gaps = 4/74 (5%)
Query: 21 FYSLLRDLMPFLPPMIGFLFLFYAKKYD-HFLPSLSVFGCLFWF--ESMHLKTLGVLALL 77
F S+L + FL + F+ LF A +F+P + VFG F + K L +
Sbjct: 124 FGSILFSIKYFLKSLT-FMLLFLAVLTPLYFIPFIGVFGVFFSIVPHFLFFKNTMSLDIA 182
Query: 78 FLIYHQIAYKNSLK 91
+I++ +Y+N LK
Sbjct: 183 SMIFNHQSYQNLLK 196
>ref|NP_223127.1| putative [Helicobacter pylori J99]
Length = 202
Score = 26.2 bits (56), Expect = 0.39
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 60 LFWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLFKTLH-VFLVYYLYL-SRFFS 117
L +FE+ L V+ L Y N+L L +G LH ++ LY RFF
Sbjct: 88 LSFFENFAFSFLAVILCALLSYLVPNASNALSLIGNGVSIFYLHKLYRELSLYTQERFFL 147
Query: 118 MSLSLKILGF-LALFALIESAL 138
L + F LAL ++ AL
Sbjct: 148 SGFRLLLFSFMLALLGVLVQAL 169
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 25.0 bits (53), Expect = 0.88
Identities = 17/75 (22%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Query: 51 LPSLSVFGCLFWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLFKTLHVFLVYYL 110
LP + + G ++ FES+ L V + YH I+ L + F+ ++H + + +
Sbjct: 296 LPLIFMMGFVWPFESLP-SYLQVFVQIVPAYHGISLLGRLNQMHAEFIDVSIHFYALIAI 354
Query: 111 YLSRFFSMSLSLKIL 125
++ F L L
Sbjct: 355 FIVSFIGCVFKLSSL 369
>ref|NP_223535.1| putative [Helicobacter pylori J99]
Length = 460
Score = 24.3 bits (51), Expect = 1.5
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 12 LCLGILGFYF-YSLLRDLMPFLPPMIGFLFLFYAKKYDHFLPSL-SVFGCLFWFESMHLK 69
LC I+ F Y LL + FL ++ + F+A Y L +L + L E HL+
Sbjct: 91 LCTPIVAINFWYLLLVFITTFLGALLQYKHSFFASAYSASLLNLCMILALLISKEKTHLE 150
Query: 70 TLGVLA 75
L L+
Sbjct: 151 ALYYLS 156
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 24.3 bits (51), Expect = 1.5
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 35 MIGFLFLFYAKKYDHFLPSLSVFGCLFWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFN 94
++GFL +F A K D FL + M + L + F ++ N+L +
Sbjct: 8 LMGFLLVFSALKADDFLEEANETAPANLNHPM--QDLNAIQGSFFDKNRSKMSNTLNI-- 63
Query: 95 DGFLFKTLHVFLVYYLYLSRFFSMSLSLKILG 126
D F +T + L Y + FFS +S +LG
Sbjct: 64 DYFQGQTYKIRLRYAMATLLFFSKPISDFVLG 95
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 23.9 bits (50), Expect = 2.0
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 105 FLVYYLYLSRFFSMSL-SLKILGFLALFALIESALW 139
F+ +L LS F + SLK LG++ + +L+ SAL+
Sbjct: 211 FVATFLILSCFILYAKKSLKPLGYMVVVSLVLSALY 246
>ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 388
Score = 22.7 bits (47), Expect = 4.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 50 FLPSLSVFGCLFWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLF 99
F+PSL + G F ES+ G + L + +A LK+ GF F
Sbjct: 77 FVPSLLIIGMFFLPESLSSSAGGAKRWIRLGFFSLAPLEFLKI---GFTF 123
>ref|NP_223483.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 273
Score = 22.7 bits (47), Expect = 4.4
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 42 FYAKKYDHFLPSLSVFGCLFWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLFKT 101
+YA KY SL GC S+ K + + + ++ I K F +G F
Sbjct: 86 YYALKYHAKFMSLGELGCYASHYSLWQKCIELNEAICILEDDITLKED---FKEGLDFLE 142
Query: 102 LHV 104
H+
Sbjct: 143 KHI 145
>ref|NP_222994.1| putative [Helicobacter pylori J99]
Length = 157
Score = 22.7 bits (47), Expect = 4.4
Identities = 14/42 (33%), Positives = 19/42 (44%)
Query: 68 LKTLGVLALLFLIYHQIAYKNSLKLFNDGFLFKTLHVFLVYY 109
L +G + LL+ I I YK SL G L + V+Y
Sbjct: 63 LGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFY 104
>ref|NP_222736.1| putative [Helicobacter pylori J99]
Length = 87
Score = 22.7 bits (47), Expect = 4.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 118 MSLSLKILGFLALFALIE 135
+S L LGFLALF+++E
Sbjct: 45 LSAFLLYLGFLALFSVLE 62
>ref|NP_223911.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 22.3 bits (46), Expect = 5.7
Identities = 37/156 (23%), Positives = 61/156 (38%), Gaps = 46/156 (29%)
Query: 22 YSLLRDLMPFLPPMIGFL----------------FLFYAKK-------YDHF----LPSL 54
Y+LLR L+P P + FL YA+K Y F + L
Sbjct: 257 YALLRFLLPLFPELSEIYLTPIAIVALCMIIYGGFLAYAQKDLKTLIAYSSFSHMGVVVL 316
Query: 55 SVF--------GCLFWFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLFKTLHVFL 106
VF G +F + + +G+ L ++ + +SL++ G + K+ VF
Sbjct: 317 GVFSFNVEGVSGAVFMMFAHGVIVMGLFLLAGILEER---ASSLEIARFGSIAKSAPVFA 373
Query: 107 VYY-LYLSRFFSMSLS-------LKILGFLALFALI 134
++ + L M LS L +LGF A + L+
Sbjct: 374 AFFMIVLMANVGMPLSIGFVGEFLSLLGFFATYPLL 409
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 22.3 bits (46), Expect = 5.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 104 VFLVYYLYLSRFFSMSLSLKILGFLALFALIES 136
V L+Y+ S FSM ++ I GF L A +ES
Sbjct: 346 VNLLYHYLTSSEFSMQVNAIIEGFEQLRADLES 378
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE
[Helicobacter pylori J99]
Length = 469
Score = 21.9 bits (45), Expect = 7.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 51 LPSLSVFGCLFWFESMHLKTLGV 73
L L V CLFW + TL +
Sbjct: 2 LVRLGVVACLFWLHYAYATTLKI 24
>ref|NP_222967.1| putative [Helicobacter pylori J99]
Length = 172
Score = 21.9 bits (45), Expect = 7.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 26 RDLMPFLPPMIGFLFLFYAKKYDHFL 51
+D M P FL +FYA++ + FL
Sbjct: 15 KDFMREYPEPYKFLQVFYAQEKERFL 40
>ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter pylori J99]
Length = 266
Score = 21.9 bits (45), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 28 LMPFLPPMIGFLFLF 42
++PFL P +GF LF
Sbjct: 104 ILPFLYPGVGFFALF 118
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 21.6 bits (44), Expect = 9.7
Identities = 19/79 (24%), Positives = 34/79 (42%), Gaps = 5/79 (6%)
Query: 38 FLFLFYAKKYDHFLPSLSVFGCLFWFESMHLKTLGVLALLFLIYHQIAYKNSL---KLFN 94
FL++F + F+P LSV F + L +L L F+I + + K
Sbjct: 266 FLYVFAILPF--FVPFLSVLIAYFSPSLARYENLALLGLKFIIITLVVWGLFFALGKFSI 323
Query: 95 DGFLFKTLHVFLVYYLYLS 113
G L + V ++++L+
Sbjct: 324 SGILIPEIGVLSPFFVFLA 342
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 21.6 bits (44), Expect = 9.7
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 58 GCLFWFESMHLKTLGVLALLFLIYHQIAYKNSL 90
GCL ++ H TLG + +F + + Y N +
Sbjct: 245 GCLISYDVRHFDTLGEESKIFRVLNDF-YHNPI 276
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 21.6 bits (44), Expect = 9.7
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 84 IAYKNSLKLFNDGFLFKTLHVFLVYYLYLSRFFSMSLSLKILGFLALFALIE 135
+ YKN+L +F D F ++++ LVY + + L +K L + ++E
Sbjct: 544 LGYKNNLFVFLDQFADSSINI-LVYCFSKTVVWEEWLEVKEDVMLKIMGIVE 594
>ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
Length = 347
Score = 21.6 bits (44), Expect = 9.7
Identities = 11/38 (28%), Positives = 20/38 (51%)
Query: 62 WFESMHLKTLGVLALLFLIYHQIAYKNSLKLFNDGFLF 99
+ ++ K LGV AL +++ ++ N+L L F F
Sbjct: 131 YLTKLYAKDLGVKALDYVLLNEKNRANALDLIGFNFPF 168
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.338 0.153 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,334
Number of Sequences: 1491
Number of extensions: 7659
Number of successful extensions: 68
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 24
length of query: 147
length of database: 494,079
effective HSP length: 70
effective length of query: 77
effective length of database: 389,709
effective search space: 30007593
effective search space used: 30007593
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 44 (21.6 bits)