BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646175|ref|NP_208359.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224194.1| putative [Helicobacter pylori J99] 355 e-100
ref|NP_223856.1| putative role in outermembrane permeabilit... 33 0.004
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 29 0.087
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 26 0.74
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 25 1.3
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 24 2.1
ref|NP_224108.1| PEPTIDYL-TRNA HYDROLASE [Helicobacter pylo... 24 2.8
ref|NP_223942.1| 50S RIBOSOMAL PROTEIN L6 [Helicobacter pyl... 24 2.8
ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99] 23 3.7
ref|NP_223017.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_223384.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 23 6.2
ref|NP_224073.1| putative motility protein [Helicobacter py... 22 8.2
ref|NP_223234.1| putative [Helicobacter pylori J99] 22 8.2
>ref|NP_224194.1| putative [Helicobacter pylori J99]
Length = 185
Score = 355 bits (911), Expect = e-100
Identities = 176/182 (96%), Positives = 177/182 (96%)
Query: 1 MRWWCFLVCCFGILSVMDAKKLENKNLKKERELLEITGNQFVANDKTKTAVIQGNVQIKK 60
MRWWCFLVCC +LSVMDAKKLENK LKKERELLEITGNQFVANDKTKTAVIQGNVQIKK
Sbjct: 1 MRWWCFLVCCLSVLSVMDAKKLENKGLKKERELLEITGNQFVANDKTKTAVIQGNVQIKK 60
Query: 61 GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLL 120
GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGS DKLIYNALNGEYKLL
Sbjct: 61 GKDRLFADKVSVFLNDKRKPERYEATGNTHFNIFTEDNREISGSTDKLIYNALNGEYKLL 120
Query: 121 QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG 180
QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG
Sbjct: 121 QNAVVREVGKSNVITGDEIILNKTKGYADVLGSAKRPAKFVFDMEDINEENRKAKLKKKG 180
Query: 181 EK 182
K
Sbjct: 181 AK 182
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 33.5 bits (75), Expect = 0.004
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 35/110 (31%)
Query: 3 WWCF------LVCCFGILSVMDAKKLENKNLKKER-ELLEITGNQFVAND---------- 45
W CF + F +LSV DAK++ + K+ ++ EI ++ A D
Sbjct: 9 WCCFKMIRWLYLAVFFLLSVSDAKEIAMQRFDKQNHKIFEILADKVSAKDNVITASGNAI 68
Query: 46 -----------------KTKTAVIQGNVQIKKGKDRLF-ADKVSVFLNDK 77
KTK A+++GN+++ +G+ L D V + LN+K
Sbjct: 69 LLNYDVYILADKVRYDTKTKEALLEGNIKVYRGEGLLVKTDYVKLSLNEK 118
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 28.9 bits (63), Expect = 0.087
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 28/151 (18%)
Query: 21 KLENKNLKKE-RELLEITGN---QFVANDKTKTAVIQGNVQIKKGKDRLFADKVSVFLND 76
K E K LKKE ++ +I N Q+V+ D TKT + D+ F D F N
Sbjct: 42 KKEAKRLKKEAKQRQQIPDNKKPQYVSVDDTKTQALFDIYDTLNVNDKSFGD---WFGNS 98
Query: 77 KRKPERYEATGNTHFNIFTEDNREISGSADKLIYNALNGEYKLLQNAVVREVGKSNVITG 136
K + Y ++ D + + N L+ E +++ + +ITG
Sbjct: 99 ALKNKTY---------LYAMDLLDYN--------NYLSIENPIIKTRAMGTYADLIIITG 141
Query: 137 DEIILNKTKGYADVLGSA-KRPAKFVFDMED 166
L + GY ++L + KR AKFV + D
Sbjct: 142 S---LEQVNGYYNILKALNKRNAKFVLKIND 169
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 25.8 bits (55), Expect = 0.74
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 74 LNDKRKPERYEATGNTHFNIFTEDNREISGSADKLI-YNA---LNGEYKL 119
L D ++PE+YE + NT + EI G L+ NA ++G+YK+
Sbjct: 327 LKDNKEPEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKI 376
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 25.0 bits (53), Expect = 1.3
Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 4/64 (6%)
Query: 89 THFNIFTEDNREISGSADKLI-YNALN---GEYKLLQNAVVREVGKSNVITGDEIILNKT 144
+H I T+ I + + LI +NA + G Y L+ +A G +N ITG + N
Sbjct: 1858 SHAIINTQGTATIMANNNPLIQFNASSKEVGTYTLIDSAKAIYYGYNNQITGGSSLDNYL 1917
Query: 145 KGYA 148
K YA
Sbjct: 1918 KLYA 1921
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 24.3 bits (51), Expect = 2.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 91 FNIFTEDNREISGSADKLIYNALNGEYKLLQNAVVREVG 129
FN F R++S K I + GE L ++V E+G
Sbjct: 350 FNKFPRMVRDLSRELGKSIELIIEGEETELDKSIVEEIG 388
>ref|NP_224108.1| PEPTIDYL-TRNA HYDROLASE [Helicobacter pylori J99]
Length = 186
Score = 23.9 bits (50), Expect = 2.8
Identities = 22/75 (29%), Positives = 30/75 (39%), Gaps = 6/75 (8%)
Query: 110 YNALNGEYKLLQNAVVR-EVGKSNVITGDEIILNKTKGYADVLGSA-----KRPAKFVFD 163
+N L L N+ R VG S I E +L+K + L +A K KF +
Sbjct: 106 HNGLKSIDALCSNSYYRLRVGISKGINITEHVLSKFHNNEEPLKNAAFEHAKNALKFFIE 165
Query: 164 MEDINEENRKAKLKK 178
D N + LKK
Sbjct: 166 SHDFNATQNRFTLKK 180
>ref|NP_223942.1| 50S RIBOSOMAL PROTEIN L6 [Helicobacter pylori J99]
Length = 178
Score = 23.9 bits (50), Expect = 2.8
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 51 VIQGNVQIKKGKDRLFADKVSVFLNDKRKPERYEATGNTHFN 92
V++ N KG D+ +V+ + R PE Y+ G + N
Sbjct: 124 VVEKNTITIKGSDKQQVGQVAAEIRSFRPPEPYKGKGVKYSN 165
>ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99]
Length = 206
Score = 23.5 bits (49), Expect = 3.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 84 EATGNTHFNIFTEDNREISGSADKLIYNALNGE 116
E THF++ T + G D L YN ++ E
Sbjct: 27 EKIPKTHFSLSTTTRKPREGEVDGLHYNFVSEE 59
>ref|NP_223017.1| putative [Helicobacter pylori J99]
Length = 321
Score = 23.1 bits (48), Expect = 4.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 124 VVREVGKSNVI-----TGDEIILNKTKGYADVLG 152
++++ SN++ G E ILN KG+ D LG
Sbjct: 281 ILKDQNGSNLVFIVRHLGREKILNSLKGFKDFLG 314
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 22.7 bits (47), Expect = 6.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 51 VIQGNVQIKKGKDRLFADKVSVFLNDKRK----PERYEATGNTHF 91
VIQ ++ + + K ++ K+ LND+ K E Y+AT +F
Sbjct: 16 VIQQHLSVLQEKSQVGFGKIRSKLNDQEKHDSLEEIYKATNEKNF 60
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 22.7 bits (47), Expect = 6.2
Identities = 10/35 (28%), Positives = 19/35 (53%)
Query: 59 KKGKDRLFADKVSVFLNDKRKPERYEATGNTHFNI 93
KK D+L ++++ + R P Y+ T N F++
Sbjct: 185 KKPLDKLTLKEITMLVALPRAPSFYDPTKNLEFSL 219
>ref|NP_224073.1| putative motility protein [Helicobacter pylori J99]
Length = 195
Score = 22.3 bits (46), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (61%), Gaps = 2/24 (8%)
Query: 53 QGNVQIKKGKDRLFAD--KVSVFL 74
+GN + KGKD L D K+ ++L
Sbjct: 169 KGNFAVTKGKDTLILDNQKMKIYL 192
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 22.3 bits (46), Expect = 8.2
Identities = 15/43 (34%), Positives = 19/43 (43%), Gaps = 8/43 (18%)
Query: 38 GNQFVANDKTKTAVIQGNVQIKKGKDRLFADKVSVFLNDKRKP 80
GNQF+AN K ++Q R F D +NDK P
Sbjct: 88 GNQFLANIKECEVILQ--------VVRCFEDDNITHVNDKIDP 122
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,580
Number of Sequences: 1491
Number of extensions: 9217
Number of successful extensions: 33
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 15
length of query: 183
length of database: 494,079
effective HSP length: 72
effective length of query: 111
effective length of database: 386,727
effective search space: 42926697
effective search space used: 42926697
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)