BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646176|ref|NP_208360.1| hypothetical protein
[Helicobacter pylori 26695]
(197 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224195.1| putative [Helicobacter pylori J99] 384 e-109
ref|NP_222978.1| putative [Helicobacter pylori J99] 29 0.074
ref|NP_224109.1| putative [Helicobacter pylori J99] 28 0.22
ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Heli... 28 0.22
ref|NP_222872.1| putative histidine kinase sensor protein [... 27 0.37
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 25 1.1
ref|NP_223986.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223651.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_223244.1| putative [Helicobacter pylori J99] 25 1.8
ref|NP_222814.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_223983.1| GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [... 23 5.3
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 23 5.3
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 23 5.3
ref|NP_223205.1| cag island protein [Helicobacter pylori J99] 23 5.3
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 23 5.3
ref|NP_223774.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 23 6.9
ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [He... 22 9.1
ref|NP_224153.1| putative [Helicobacter pylori J99] 22 9.1
ref|NP_223791.1| 50S RIBOSOMAL PROTEIN L19. [Helicobacter p... 22 9.1
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 22 9.1
>ref|NP_224195.1| putative [Helicobacter pylori J99]
Length = 197
Score = 384 bits (986), Expect = e-109
Identities = 193/197 (97%), Positives = 196/197 (98%)
Query: 1 MKRSSFTSNSVLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKI 60
MK SSFTSNSVLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKI
Sbjct: 1 MKCSSFTSNSVLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKI 60
Query: 61 LDLSIEGKKALQYDDHEIFFDSKIKRYDEDTIESVESPKAKRQQDLYFFPNGVTYKRSDD 120
LDLSIEGKKALQYDDHEIFFDSKIKRYDEDTIESVESP+AKRQQDLYFFPNGVTYKRSDD
Sbjct: 61 LDLSIEGKKALQYDDHEIFFDSKIKRYDEDTIESVESPEAKRQQDLYFFPNGVTYKRSDD 120
Query: 121 SSFWSETGIYNHKEQNFKGKGRFILTSKDSKIEGLDISYSHALAIIEAQSIQAHLFLDEI 180
SSFWSETGIYNHKEQNFKGKGRFILTSKDSK+EGLDISYSHALAIIEAQSIQA+LFLDEI
Sbjct: 121 SSFWSETGIYNHKEQNFKGKGRFILTSKDSKVEGLDISYSHALAIIEAQSIQANLFLDEI 180
Query: 181 KQSQKEKKKFPTFKGGF 197
KQSQKEKKKFPTFKGGF
Sbjct: 181 KQSQKEKKKFPTFKGGF 197
>ref|NP_222978.1| putative [Helicobacter pylori J99]
Length = 177
Score = 29.3 bits (64), Expect = 0.074
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 14 FFVVLSFITIGLVFFFL-------RSQPTSVVSKENIPKIELENFKAFQINDKILDLSIE 66
F++ LSF+ IG + +F+ + +S+ +E + + E+ + D+ L L E
Sbjct: 23 FYIFLSFVLIGGLVWFMHNAIKRAQDNASSLTIQERLYRHEISRLQV--KTDETLKLIKE 80
Query: 67 GKKALQYDD 75
KK L Y+D
Sbjct: 81 AKKRLNYND 89
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 27.7 bits (60), Expect = 0.22
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 49 ENFKAFQINDKILDLSIEGKKALQYDDHEIFFDSKI 84
+N K F++ DK L+ E K+A D + I D+ I
Sbjct: 163 QNIKVFRLKDKTLESYAEAKEAFFEDKYWILHDTTI 198
>ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Helicobacter pylori J99]
Length = 285
Score = 27.7 bits (60), Expect = 0.22
Identities = 17/57 (29%), Positives = 26/57 (44%)
Query: 139 GKGRFILTSKDSKIEGLDISYSHALAIIEAQSIQAHLFLDEIKQSQKEKKKFPTFKG 195
G+G S +S + + ++YS AL + + + A FL I QS F KG
Sbjct: 161 GQGTGAKLSINSLLAQMGVAYSEALLLAKRLGVDAESFLQIIGQSGMNSPLFQAKKG 217
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 442
Score = 26.9 bits (58), Expect = 0.37
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 11 VLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKILDLSIEGKKA 70
V+ F++ F ++F+ SQ +S EN E+ +++ ++IL+
Sbjct: 9 VVALFMITLFSFGAFAYYFVSSQ----ISHENYQN-EMRHYQFVTTINEILN-------- 55
Query: 71 LQYDDHEIFFDSKIK-RYDEDTIESVESPKAKRQQDLY 107
Y D+ D K + E TIE++E AKR+ L+
Sbjct: 56 -NYSDYRAIEDYLYKIGFRETTIENLEKVLAKRRHQLH 92
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 25.4 bits (54), Expect = 1.1
Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Query: 117 RSDDSSFWSETGIYNHKEQNFKGKGRFILTSKDSKIEGLDISYSHALAIIEAQS 170
+SD G++N FK + RFIL D KIE +Y L +++ S
Sbjct: 433 KSDYQKLSEGGGLFNGLNAVFKER-RFILVQLDEKIEKNKSAYDFCLNTLKSTS 485
>ref|NP_223986.1| putative [Helicobacter pylori J99]
Length = 387
Score = 25.4 bits (54), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 3/36 (8%)
Query: 40 KENIPKIELENFKAFQINDKILDLSIEGKKALQYDD 75
+ +IP +E+ AF DK +D SI K ALQ D
Sbjct: 127 RASIPSLEVS---AFSNKDKYIDHSIAPKVALQVTD 159
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 24.6 bits (52), Expect = 1.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 75 DHEIFFDSKIKRYDE----DTIESVESPKAKRQQDLYFFPNGVTYKRSDDSSFWSET 127
D+E S K DE D +E + K R + Y F NG+ K SD ++E+
Sbjct: 193 DYESTIPSDFKPIDEEEYEDDLEWLNEEKEDRLFNYYLFLNGI--KESDVEEVFNES 247
>ref|NP_223244.1| putative [Helicobacter pylori J99]
Length = 183
Score = 24.6 bits (52), Expect = 1.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 18 LSFITIGLVFFFLRSQPTSVVSKENIPKIELEN 50
LSF+ + L+FFF +++P + ++ + L N
Sbjct: 9 LSFVWLFLIFFFFKNKPLGLRFSLSLISVILSN 41
>ref|NP_222814.1| putative [Helicobacter pylori J99]
Length = 253
Score = 24.3 bits (51), Expect = 2.4
Identities = 16/45 (35%), Positives = 23/45 (50%)
Query: 22 TIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKILDLSIE 66
T+ V+ FL P + +KE LENFK +DK L+I+
Sbjct: 3 TLFSVYLFLSLNPLFLEAKEITWSQFLENFKNKNEDDKPKPLTID 47
>ref|NP_223983.1| GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 330
Score = 23.1 bits (48), Expect = 5.3
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 51 FKAFQINDKILDLSIEGKKALQYDDHEIFFDSKI 84
F A I+D+I+ + + K L + D+E+ + ++
Sbjct: 287 FSAIVIDDQIMTIGEKNAKVLAWYDNEMGYSERL 320
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 23.1 bits (48), Expect = 5.3
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 47 ELENFKAFQINDKILDLSIEGKKALQY---DDHEIFFDSKIKRYDE 89
E E+ + +++ +I+ +KAL+ E+ F++ +KRYDE
Sbjct: 47 ECESLSSLEVHS-----AIDKQKALELVSTAQEELLFETILKRYDE 87
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 23.1 bits (48), Expect = 5.3
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 7 TSNSVLNFFVVL-SFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQ 55
TS + F ++L + + + +VF FLRS ++VS +IP + F Q
Sbjct: 320 TSIEDVKFDLILGAILAVLVVFAFLRSGTITLVSAISIPISIMGTFALIQ 369
>ref|NP_223205.1| cag island protein [Helicobacter pylori J99]
Length = 237
Score = 23.1 bits (48), Expect = 5.3
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 18 LSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKA-FQINDKILDLSIEGKKALQYDDH 76
L FI+ ++F S P +++ I ++ + + I+DK+L L EGK ++ +
Sbjct: 91 LFFISEDVIFKTYMSSPELLLTYMKINPLDQKTAEQQCGISDKVLVLYCEGKLKIEQEKQ 150
Query: 77 EI--FFDSKIKRYDED 90
I ++ +K Y +
Sbjct: 151 NIRERLETSLKAYQSN 166
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 23.1 bits (48), Expect = 5.3
Identities = 25/110 (22%), Positives = 41/110 (36%), Gaps = 19/110 (17%)
Query: 66 EGKKALQYDDHEIFFDSKIKRYDEDTIESVESPKAKRQQDLYFFPNGVT----------- 114
E + + D + + K K Y + E+ +A R + PN +
Sbjct: 312 EARAKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALKDYLKPEELKLY 371
Query: 115 ---YKR-----SDDSSFWSETGIYNHKEQNFKGKGRFILTSKDSKIEGLD 156
YKR D+ F S++ + ++ FK GR +L KI G D
Sbjct: 372 TLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGHYKILGND 421
>ref|NP_223774.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 133
Score = 22.7 bits (47), Expect = 6.9
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Query: 58 DKILDLSIEGKKALQYDDHEIF--------FDSKIKRYDEDTIESVESPK 99
DK++++ ++ K A Y D + + F+ K+YD+DT S+ + K
Sbjct: 57 DKVIEIRMD-KDAKIYIDSQTYEYNSFPDTFNLLSKKYDKDTRVSIRADK 105
>ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 388
Score = 22.3 bits (46), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 2/32 (6%)
Query: 12 LNFFVV--LSFITIGLVFFFLRSQPTSVVSKE 41
L FF + L F+ IG FF S + V+KE
Sbjct: 106 LGFFSLAPLEFLKIGFTFFLAWSLSRTFVAKE 137
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 22.3 bits (46), Expect = 9.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 129 IYNHKEQNFKGKGRFILTSKDSKIEGLDISYSHALAIIEAQSIQAHLFLDEIKQSQKEK 187
IY H+E++ KG + KD +SY H +E + Q L+ K+ KEK
Sbjct: 152 IYEHQEEDLDFKGLLDILEKDF------LSYQH--KELEHKKNQIIKRLNAQKERLKEK 202
>ref|NP_223791.1| 50S RIBOSOMAL PROTEIN L19. [Helicobacter pylori J99]
Length = 118
Score = 22.3 bits (46), Expect = 9.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 176 FLDEIKQSQKEKKKFPTFKGG 196
++ + + +Q + K PTFK G
Sbjct: 5 YIQQFEDAQLKDKSMPTFKAG 25
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN
[Helicobacter pylori J99]
Length = 317
Score = 22.3 bits (46), Expect = 9.1
Identities = 12/43 (27%), Positives = 20/43 (45%)
Query: 8 SNSVLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELEN 50
SN F ++LS + L++F + SK + K+ EN
Sbjct: 22 SNRNFFFSLILSVLLHWLIYFLFEHREDFFPSKPKLVKLNPEN 64
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.136 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,615
Number of Sequences: 1491
Number of extensions: 10235
Number of successful extensions: 44
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 20
length of query: 197
length of database: 494,079
effective HSP length: 73
effective length of query: 124
effective length of database: 385,236
effective search space: 47769264
effective search space used: 47769264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)