BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646177|ref|NP_208361.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(164 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224196.1| putative [Helicobacter pylori J99] 317 1e-88
ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter py... 32 0.009
ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobact... 26 0.48
ref|NP_223896.1| OROTATE PHOSPHORIBOSYLTRANSFERASE [Helicob... 26 0.62
ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99] 25 0.81
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 25 1.4
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 24 1.8
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 24 2.4
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 23 3.1
ref|NP_223686.1| putative [Helicobacter pylori J99] 23 4.0
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 23 5.3
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 22 9.0
>ref|NP_224196.1| putative [Helicobacter pylori J99]
Length = 164
Score = 317 bits (812), Expect = 1e-88
Identities = 160/164 (97%), Positives = 160/164 (97%)
Query: 1 MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK 60
MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK
Sbjct: 1 MIKLLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVK 60
Query: 61 KRMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFD 120
KRMESLGVQFVFMGVENKN VIERLKKDLQLSAQEIACVGDDYNDLGMFKAC LSFAPFD
Sbjct: 61 KRMESLGVQFVFMGVENKNAVIERLKKDLQLSAQEIACVGDDYNDLGMFKACTLSFAPFD 120
Query: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLTLEGLQDEALKLYL 164
AHPLLKSKAYKVLQNSGGKGAVREAIDYLL LEGLQDE LKLYL
Sbjct: 121 AHPLLKSKAYKVLQNSGGKGAVREAIDYLLELEGLQDEVLKLYL 164
>ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter pylori J99]
Length = 207
Score = 32.0 bits (71), Expect = 0.009
Identities = 19/53 (35%), Positives = 28/53 (51%), Gaps = 1/53 (1%)
Query: 77 NKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKA 129
+K ++ L++ L +S VGD NDL MFK + A F+A +LK A
Sbjct: 140 SKGEMLLALQRLLNISKDRTLVVGDGANDLSMFKHAHIKIA-FNAKEILKQHA 191
>ref|NP_223917.1| TRYPTOPHAN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 393
Score = 26.2 bits (56), Expect = 0.48
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 73 MGVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKA 111
+G E K+ ++E K+ +L IACVG N +G+F A
Sbjct: 206 IGDEVKSQILE---KENRLPDYVIACVGGGSNAIGIFSA 241
>ref|NP_223896.1| OROTATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 201
Score = 25.8 bits (55), Expect = 0.62
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 50 IITGRTSIMVKKRMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACV 99
I TG++++ K +E G Q V G + +R L AQE AC+
Sbjct: 116 ITTGKSAMECAKVLEEKGAQIVAFGALANRGICKRAHS--HLKAQEGACL 163
>ref|NP_223048.1| GTP-BINDING PROTEIN [Helicobacter pylori J99]
Length = 604
Score = 25.4 bits (54), Expect = 0.81
Identities = 19/77 (24%), Positives = 34/77 (43%), Gaps = 3/77 (3%)
Query: 74 GVENKNTVIERLKKDLQLSAQEIACVGDDYNDLGMFKACALSFAPFDAHPLLKSKAYKVL 133
G++ K + + + L S V D Y+ L K+C +A FD P+ +A V
Sbjct: 435 GIQEKMEYLNQSRVMLTYSLPSNEIVMDFYDKL---KSCTKGYASFDYEPIENREANLVK 491
Query: 134 QNSGGKGAVREAIDYLL 150
+ G V +A+ ++
Sbjct: 492 LDVRVAGDVVDALSIII 508
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 24.6 bits (52), Expect = 1.4
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 8 DVDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQKLGKKIAIITGRTSIMVKKRMESLG 67
DV +L S Y + + K FN Q L KIA+ G+T + K +E G
Sbjct: 122 DVIASLATLSPYKTRIYSKDKDFN----------QLLSDKIALFDGKTEFLAKDCVEKYG 171
Query: 68 V 68
+
Sbjct: 172 I 172
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 24.3 bits (51), Expect = 1.8
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 40 LWQKLGKKIAIITGRTSIMVKKRMESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACV 99
LW L K++ S+ + KR+E + Q + + E+K ++L K+L+ + ++ +
Sbjct: 43 LWYFLAKRLRSFLHSKSLEISKRLEEIQAQ-LKVSKEHK----KKLLKELEQAKEKAELI 97
Query: 100 GDDYN 104
D N
Sbjct: 98 ISDAN 102
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 23.9 bits (50), Expect = 2.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 4 LLLLDVDGTLTDGSLYFDENFHEIKAFNVKDGL 36
L+LL++ G L ++FD E + F KD +
Sbjct: 229 LMLLEIKGNLDALDIHFDSYASEKEVFKHKDAV 261
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 23.5 bits (49), Expect = 3.1
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 21 DENFHEIKAFNVK--DGLGMTLWQKLG--KKIAIITGRTSIMVKKRMESLGVQFVFMGVE 76
DE + FNVK L QK + +A R S K + +L ++ + + ++
Sbjct: 267 DEWLQRLDGFNVKLHRSFKTLLHQKKAHLEHLAASLKRLSFENKHHLNALKLEKLTIALD 326
Query: 77 NKNTVIERLKKDL 89
NK RLKK L
Sbjct: 327 NKTLEFLRLKKTL 339
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 23.1 bits (48), Expect = 4.0
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
Query: 64 ESLGVQFVFMGVENKNTVIERLKKDLQLSAQEIACVGDDYNDL 106
+++ + +F + N VIE KK+ + SA EI+ NDL
Sbjct: 27 DAVDLFLIFNQINQLNQVIETYKKNPERSA-EISLYNTQKNDL 68
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 22.7 bits (47), Expect = 5.3
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 101 DDYNDLGMFKACALSFAPFDAHPLLKSKAYKVLQNSGGKGAVREAIDYL-----LTLEGL 155
+ Y D K P +H LL + + QN ++E++ + L ++GL
Sbjct: 384 ESYRDGSQQKIMRPKVCPICSHELLCEEIFTYCQNLNCPARLKESLIHFASKDALNIQGL 443
Query: 156 QDEALK 161
D+ ++
Sbjct: 444 GDKVIE 449
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 21.9 bits (45), Expect = 9.0
Identities = 25/112 (22%), Positives = 46/112 (40%), Gaps = 21/112 (18%)
Query: 9 VDGTLTDGSLYFDENFHEIKAFNVKDGLGMTLWQ--KLGKKIAI-----ITGRTSIMVKK 61
VDG L + ++D++ + + D + + + + K KKI++ +T T +K
Sbjct: 394 VDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDKKISLSAKHLVTSPTEEFAQK 453
Query: 62 RMESLGVQFVFMGVEN--------------KNTVIERLKKDLQLSAQEIACV 99
+Q + +++ KN + LKKD QEI CV
Sbjct: 454 HKTDSVIQGKVVSIKDFGVFIHADGIDVLIKNEDLNPLKKDEIKIGQEITCV 505
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.140 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,858
Number of Sequences: 1491
Number of extensions: 7741
Number of successful extensions: 24
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 13
length of query: 164
length of database: 494,079
effective HSP length: 71
effective length of query: 93
effective length of database: 388,218
effective search space: 36104274
effective search space used: 36104274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)