BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644788|ref|NP_206958.1| lipopolysaccharide
1,2-glucosyltransferase (rfaJ) [Helicobacter pylori 26695]
(372 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 653 0.0
ref|NP_223538.1| putative lipopolysaccharide biosynthesis p... 311 1e-86
ref|NP_222915.1| putative lipopolysaccharide biosynthesis p... 311 2e-86
ref|NP_224029.1| lipopolysaccharide biosynthesis protein [H... 172 1e-44
ref|NP_223749.1| putative lipopolysaccharide biosynthesis p... 109 1e-25
ref|NP_223748.1| putative lipopolysaccharide biosynthesis p... 96 1e-21
ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobact... 36 0.002
ref|NP_223211.1| cag island protein [Helicobacter pylori J99] 28 0.38
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 27 0.65
ref|NP_223645.1| putative [Helicobacter pylori J99] 26 1.5
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 25 2.5
ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE L... 25 2.5
ref|NP_224044.1| putative [Helicobacter pylori J99] 25 3.2
ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Heli... 25 3.2
ref|NP_223458.1| GTP CYCLOHYDROLASE II/3,4-DIHYDROXY-2-BUTA... 25 3.2
ref|NP_223424.1| MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNT... 25 3.2
ref|NP_222755.1| putative [Helicobacter pylori J99] 25 3.2
ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Heli... 24 5.5
ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 24 7.2
ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 24 7.2
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 24 7.2
ref|NP_223464.1| putative [Helicobacter pylori J99] 24 7.2
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 23 9.4
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 23 9.4
ref|NP_223290.1| putative [Helicobacter pylori J99] 23 9.4
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 9.4
ref|NP_222943.1| PORPHOBILINOGEN DEAMINASE [Helicobacter py... 23 9.4
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 653 bits (1685), Expect = 0.0
Identities = 319/377 (84%), Positives = 346/377 (91%), Gaps = 5/377 (1%)
Query: 1 MSIIIPIVIAFDNHYAMPAGVSLYSMLACAKTEHPQSQN-----DSEKLFYKIHCLVDNL 55
MSI IPIVIAFDNHYA+PAGVSLYSMLACAK+E+P+SQN D++KLFYKIHCLVDNL
Sbjct: 1 MSITIPIVIAFDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLVDNL 60
Query: 56 SLENQSKLKETLAPFSAFSSLEFLDISTPNLHATPIEPSAIDKINEAFLQLNIYAKTRFS 115
SLENQ KLKETL PFSAF+S++FLDISTPNL+ T +EPS IDKI+EAFLQLNIYAKTRFS
Sbjct: 61 SLENQQKLKETLVPFSAFASVDFLDISTPNLYTTSVEPSVIDKIHEAFLQLNIYAKTRFS 120
Query: 116 KMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDGYYFGAAKDFASDKSPKHF 175
KMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLD YYFGAAKDF+S KS KHF
Sbjct: 121 KMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFGAAKDFSSPKSLKHF 180
Query: 176 QIVREKDPRQAFSLYEHYLNESDMQIIYESNYNAGFLVVNLKLWRADHLEERLLNLTHQK 235
Q RE++PRQ FSLYEHYL E DMQII E++YN GFL+VNLKLWRAD LEE LLNLTHQK
Sbjct: 181 QTEREREPRQKFSLYEHYLKEKDMQIICENHYNVGFLIVNLKLWRADKLEEHLLNLTHQK 240
Query: 236 GQCVFYPEQDLLTLACYQKVLILPYIYNTHPFMANQKRFIPDKKEIVMLHFYFVGKPWVL 295
GQCVF PEQDLLTLACYQKVL LPYIYN HPFMANQKRFIP+++EI+MLHFYFVGKPW+L
Sbjct: 241 GQCVFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFIPNQQEIIMLHFYFVGKPWIL 300
Query: 296 PTFSYSKEWHETLLKTPFYAEYSVKFLKQMTECLSLKDKQKTFEFLAPLLNKKTLLEYVF 355
PT YSKEWHE LLKTPFYAEYSVKFLKQMTECLSL+DKQKTFEFLAPLLN KTLLEYVF
Sbjct: 301 PTALYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTFEFLAPLLNPKTLLEYVF 360
Query: 356 FRLNRIFKRLKEKFFNS 372
FRL++IFKRLKE+F NS
Sbjct: 361 FRLSKIFKRLKERFLNS 377
>ref|NP_223538.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 373
Score = 311 bits (798), Expect = 1e-86
Identities = 175/369 (47%), Positives = 231/369 (62%), Gaps = 24/369 (6%)
Query: 5 IPIVIAFDNHYAMPAGVSLYSMLACAKTEHPQSQNDSEKLFYKIHCLVDNLSLENQSKLK 64
IPIV+AFDN+Y +PAGVSLYSML AK E D KLFY+IHCLVD+LS EN KLK
Sbjct: 17 IPIVVAFDNNYCIPAGVSLYSMLLNAKRER-----DGVKLFYQIHCLVDSLSAENAEKLK 71
Query: 65 ETLAPFSAFSSLEFLDISTPNLHATPIEPSAIDKINEAFLQLNIYAKTRFSKMVMCRLFL 124
T++PFSAFS +EF DIS + + +++ FL+LN +AK RFSKM++CRL L
Sbjct: 72 RTISPFSAFSGIEFCDISKNGAYPFKL-------VSQLFLRLNPFAKKRFSKMILCRLLL 124
Query: 125 ASLFPQYDKIIMFDADTLFLNDVSESFFIPLDGYYFGAAKDFAS----DKSPKHFQIVRE 180
AS+FPQY+KIIMFD DTLF+ D+SE FF P+DG YFGA K+ S + F
Sbjct: 125 ASIFPQYEKIIMFDVDTLFVGDISEGFFTPMDGEYFGATKEDLSLIGIHSTNDLFVSRLN 184
Query: 181 KDPRQAFSLYEHYLNESDMQIIYESNYNAGFLVVNLKLWRADHLEERLLNLTHQKGQCVF 240
L L+ ++ I+YE+ +NAGF++VNL+LWR HLEE+L++ + + +
Sbjct: 185 WSKGMGVKLNHKSLSFQEVGILYENPFNAGFMLVNLELWRESHLEEKLIDFFKTRDEGLL 244
Query: 241 YPEQDLLTLACYQKVLILPYIYNTHPFMANQKRFIPDKKEIVMLHFYFVGKPWVLPTFSY 300
PEQDL L C ++L +P YN HP M R IP K + MLHFY KPW + Y
Sbjct: 245 LPEQDLFVLVCQGRILEMPCKYNVHPRMVG-TRMIPKKSDACMLHFYADEKPWKHFGYPY 303
Query: 301 SKEWHETLLKTPFYA---EYSVKFLKQMTECLSLKDKQKTFEFLAPLLNKKTLLEYVFFR 357
SKEWH+ KT F + E V ++ TE L+ +K+ FEFL LNKK L++YV F
Sbjct: 304 SKEWHQVAFKTSFESLVFENLVGKIETFTE-LNDHNKKSFFEFLNTRLNKKFLIQYVLF- 361
Query: 358 LNRIFKRLK 366
+IFK+L+
Sbjct: 362 --KIFKKLE 368
>ref|NP_222915.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 394
Score = 311 bits (796), Expect = 2e-86
Identities = 176/394 (44%), Positives = 247/394 (62%), Gaps = 34/394 (8%)
Query: 1 MSIIIPIVIAFDNHYAMPAGVSLYSMLACAKTEHPQSQNDSEKLFYKIHCLVDNLSLENQ 60
M IIPIV+AFDN+Y +PAGVSLYSML AK E + KLFY+IHCLV++LSLEN
Sbjct: 1 MQEIIPIVVAFDNNYCIPAGVSLYSMLVHAKRER-----ERVKLFYQIHCLVEDLSLENI 55
Query: 61 SKLKETLAPFSAFSSLEFLDISTPNLHAT----PIEPSAIDKINEAFLQLNIYAKTRFSK 116
+KL+ET+APFSAFSS+EFLDI+ L ++P +I + +L+LN +++ RFSK
Sbjct: 56 AKLEETIAPFSAFSSIEFLDITDKELEPRHNYYKLDPLIAGEIKKLYLKLNAFSQKRFSK 115
Query: 117 MVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDGYYFGAAKD---FASDK-SP 172
M+MCR F ASLFPQYDK+IMFD DTLF+ D+SESFFIPL +YFGA ++ A D+ S
Sbjct: 116 MIMCRFFFASLFPQYDKMIMFDVDTLFVGDISESFFIPLGTHYFGAVREKDLIAMDRNSA 175
Query: 173 KHFQIVREKDPRQAFSLYEHYLNESDMQIIYESNYNAGFLVVNLKLWRADHLEERLLNLT 232
K +R+ + + + + + N + QI++++ +NAGFL +NLK WR ++LE +L+
Sbjct: 176 KDLYELRQMHAK-SIGIADAFPNLEETQILFDNYFNAGFLALNLKSWRKENLENQLIEFF 234
Query: 233 HQKGQCVFYPEQDLLTLACYQKVLILPYIYNTHPFMANQKRFIPDKKEIVMLHFYFVGKP 292
K + + + +QD L C ++L LPY YN HP + F P KE MLHF+ KP
Sbjct: 235 LLKNEKLLFNDQDALCFVCRGRILELPYSYNAHPSFLDTPSF-PSIKEACMLHFW-GDKP 292
Query: 293 WVLPTFSYSKEWHETLLKTPFY-AEYSVKFLKQMTE-----------------CLSLKDK 334
W L + +K+WHE L++TPF A ++ FL + E LS DK
Sbjct: 293 WKLLSVIGAKKWHEALIQTPFKDAYFNAPFLDHLFESLQNKDKETQEIHAFNKALSFSDK 352
Query: 335 QKTFEFLAPLLNKKTLLEYVFFRLNRIFKRLKEK 368
+ +FEFL P L+ K L+ + F++ R KRL +K
Sbjct: 353 RYSFEFLLPRLSSKLLVGFSLFKIKRKAKRLVKK 386
>ref|NP_224029.1| lipopolysaccharide biosynthesis protein [Helicobacter pylori J99]
Length = 367
Score = 172 bits (437), Expect = 1e-44
Identities = 134/385 (34%), Positives = 198/385 (50%), Gaps = 50/385 (12%)
Query: 4 IIPIVIAFDNHYAMPAGVSLYSMLACAKTEHPQSQ----NDSEKLF-----YKIHCLVDN 54
IIPI ++FD +YA+ AGVSLYS+L+ A N S KL YKIHCLV
Sbjct: 10 IIPIFMSFDKNYALGAGVSLYSLLSHASRHTSMIDFSPLNQSNKLLGANIVYKIHCLVKG 69
Query: 55 LSLENQSKLKETLAPFSAFSSLEFLDISTPNLHATPIEPSAIDKINEAFLQLNIYAKTRF 114
++LE Q+KL +T+ PF F+SLEF+DI++ +D E++L + +K
Sbjct: 70 VTLEQQNKLLKTIEPFKKFASLEFIDINS------------LDHSIESYLNESC-SKRYG 116
Query: 115 SKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDGY---YFGAAKDFASDKS 171
+V+CRL LASLFP Y KII D DT+FL DV+ ++F LD G +D S
Sbjct: 117 GLLVLCRLLLASLFPNYSKIISIDVDTVFLGDVASAYFA-LDNEPTKLLGMVRDTFSHLP 175
Query: 172 PKHFQIVREKDPRQAFSLYEHYLNESDMQIIYESNYNAGFLVVNLKLWRADHLEERLLNL 231
+ F E+ + F + ++++++ I++ +N GFLV NL LWR + E+ L
Sbjct: 176 FEAFCDFCERTCKN-FKIDLLRFSQNELKRIHQG-FNMGFLVANLDLWRENGFEKIALEF 233
Query: 232 THQKGQCVFYPEQDLLTLACYQKVLILPYIYNTHPFMANQKRFIPDKKEIVMLHFYFVGK 291
+G+ +FYPEQ L+ + +++L LP YN + K P K I+MLHF K
Sbjct: 234 LKTRGKDLFYPEQCLINMVFLERILELPIHYNCYSDFF--KEHYP--KSIIMLHF-IKYK 288
Query: 292 PWVLPT------FSYSKE---WHETLLKTPFYAEYSVKFLKQMTECLSLKDKQKTFEFLA 342
PW + Y E W L TPF + F K+ E KD+Q +
Sbjct: 289 PWRSVSSLNGRLICYEAEASFWLANLFCTPFKND----FFKERLE--MAKDQQ--MQSFK 340
Query: 343 PLLNKKTLLEYVFFRLNRIFKRLKE 367
+ KT+ +Y +FR+ I K++ E
Sbjct: 341 THIRSKTIRDYFYFRIKNILKKVFE 365
>ref|NP_223749.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 398
Score = 109 bits (272), Expect = 1e-25
Identities = 113/400 (28%), Positives = 169/400 (42%), Gaps = 94/400 (23%)
Query: 5 IPIVIAFDNHYAMPAGVSLYSML-ACAKTEHPQSQNDSEKLFYKIHCLVDNLSLENQSKL 63
IPI AFD +Y +PAG +YS+L + AK ++K+ Y +H LV L+ E+++KL
Sbjct: 16 IPIAFAFDKNYLIPAGACIYSLLESIAKA--------NKKIRYTLHALVVGLNEEDKTKL 67
Query: 64 KETLAPFSAFSSLEFLDISTPNLHATPIEPSAIDKINEAFLQLNIYAKTRFSKMVMCRLF 123
+ PF F+ LE DI P L P + +E F + RFSKMV+ + F
Sbjct: 68 NQITEPFKEFAVLEVKDIE-PFLDTIP------NPFDEDFTK-------RFSKMVLVKYF 113
Query: 124 LASLFPQYDKIIMFDADTLFLNDVSESFFIPLDGYYFGAAKDFASDKSPKHFQIVREKDP 183
LA LFP+Y K++ D D +F N+ S F ++E D
Sbjct: 114 LADLFPKYSKMVWSDVDVIFCNEFSADFLN------------------------IKENDE 149
Query: 184 RQAFSLYEHYLNESDMQIIYESNYNAGFLVVNLKLWRADHLEER---LLNLTHQKGQCVF 240
+ + E + + + GFL NL R + R LL KG+ F
Sbjct: 150 NYFYGVLE----------VEKHHMMEGFLFCNLDYQRKKNFTLRMHELLKGNEAKGELDF 199
Query: 241 ----YPEQDLLTLACYQKVLILPYIYNTHPFM-----ANQKRFIPDKKEI-VMLHF---Y 287
+P L + + + PY Y F N K+ I + +E ++H+ +
Sbjct: 200 TKWCWPNMKALGI----EYCVFPYYYTIKDFSNAYLNENYKKTILEARENPTIIHYDAWW 255
Query: 288 FVGKPWVLPTFSYSKEWHETLLKTPFYAEYSVK-------FLKQMTE--CLSLKDKQKTF 338
KPW P + W L KTPF ++Y+ K + +M E S K
Sbjct: 256 GAVKPWDYPFGLKADLWLNALAKTPFMSDYTKKMHTNESFYTTKMAEQHYFSSVKSSKEI 315
Query: 339 EFLAPLLNKKTLLEYVFFRLNRIFKR-------LKEKFFN 371
F AP L K+ L +V F+ +I R L +KFFN
Sbjct: 316 VFKAPYLFFKSYL-FVVFKERKIHSRVFELTCNLVKKFFN 354
>ref|NP_223748.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 393
Score = 96.3 bits (238), Expect = 1e-21
Identities = 92/333 (27%), Positives = 139/333 (41%), Gaps = 81/333 (24%)
Query: 5 IPIVIAFDNHYAMPAGVSLYSML-ACAKTEHPQSQNDSEKLFYKIHCLVDNLSLENQSKL 63
IPI AFD +Y +PAG +YS+L + AK ++K+ Y +H LV L+ E+++KL
Sbjct: 16 IPIAFAFDKNYLIPAGACIYSLLESIAKA--------NKKIRYTLHALVVGLNEEDKTKL 67
Query: 64 KETLAPFSAFSSLEFLDISTPNLHATPIEPSAIDKINEAFLQLNIYAKTRFSKMVMCRLF 123
+ PF F+ LE DI P L P + +E F + RFSKMV+ + F
Sbjct: 68 NQITEPFKEFAVLEVKDIE-PFLDTIP------NPFDEDFTK-------RFSKMVLVKYF 113
Query: 124 LASLFPQYDKIIMFDADTLFLNDVSESFFIPLDGYYFGAAKDFASDKSPKHFQIVREKDP 183
LA LFP+Y K++ D D +F N+ S F ++E D
Sbjct: 114 LADLFPKYSKMVWSDVDVIFCNEFSADFL------------------------NIKEDDE 149
Query: 184 RQAFSLYEHYLNESDMQIIYESNYNAGFLVVNLKLWRADHLEERLLNLTHQKGQCVFYPE 243
+ +Y D YE GF NL R + +++L + + +
Sbjct: 150 NYFYGVY-------DKIYPYE-----GFFYCNLTYQRKNQFCKKILEIIRAQK----IDK 193
Query: 244 QDLLTLACYQKVLILPYIYNTHPF-----------MAN---QKRFIPDKKEIVML----H 285
+ LT C K+ L Y P +AN +E +++ H
Sbjct: 194 EPQLTEFCRSKIAPLKIEYCIFPHYYSLSEEHLKGVANAIYHNTIKQALREPIVIQYDSH 253
Query: 286 FYFVGKPWVLPTFSYSKEWHETLLKTPFYAEYS 318
YF KPW P + W L KTPF +++S
Sbjct: 254 PYFQIKPWTYPFGLKADLWLNALAKTPFMSDWS 286
>ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobacter pylori J99]
Length = 339
Score = 35.8 bits (81), Expect = 0.002
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 258 LPYIYNTHPFMANQKRFIPDKKEIVMLHFYFVGKPWVLPTFSYSKEWHETLLKTPFYAEY 317
L Y+Y+T ++ ++ + +K ++ F G PW L T+ E ++ K+
Sbjct: 114 LNYVYDT---ISQTRQKLSKEKALIG----FCGSPWTLATYMIEGEGSKSYAKSKKMLYS 166
Query: 318 SVKFLKQMTECLSLK-------------DKQKTFEFLAPLLNKKTLLEYVFFRLNRIFKR 364
+ LK + E LSL+ + F+ A L K+ LE+ + L +I K
Sbjct: 167 EPEVLKALLEKLSLELIEYLSLQIQAGVNAVMIFDSWASALEKEAYLEFSWDYLKKISKE 226
Query: 365 LKEKF 369
LK+++
Sbjct: 227 LKKRY 231
>ref|NP_223211.1| cag island protein [Helicobacter pylori J99]
Length = 208
Score = 28.1 bits (61), Expect = 0.38
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 330 SLKDKQKTFEFLAPLLNKKTLLEYVFFRLNRIFKRLKE 367
+LKDK+ TF+ + P + K + ++V +NR+ K++K+
Sbjct: 68 NLKDKKVTFKEVNPDIIKDEVFDFVI--VNRVLKKIKD 103
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 27.3 bits (59), Expect = 0.65
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 39/147 (26%)
Query: 252 YQKVLILPYIYNTHPFMANQKRFIPDKKEIVMLHFYFVGKPWVLPT---------FSYSK 302
Y K++ L I + + + N R+I K+E+ F + P LP F K
Sbjct: 425 YSKMVSLEEI-SLNDYNLNIPRYIAAKQELEKDLFALINSPSYLPKNEIKAYDPYFQVFK 483
Query: 303 EWHETLLK-TPFYAEYSVKFLKQMTECLSLKDKQK-----------------------TF 338
E TL K + Y++K TEC ++KD TF
Sbjct: 484 ELKNTLFKKSDKEGYYALK-----TECENIKDLITQSLEYQTFHASVLSAFESLDLFTTF 538
Query: 339 EFLAPLLNKKTLLEYVFFRLNRIFKRL 365
L P N KTL+E V ++ + F+++
Sbjct: 539 NDLEPGFNPKTLIESVCSKVLKEFEKV 565
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 26.2 bits (56), Expect = 1.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 42 EKLFYKIHCLVDNLSLENQSKLKETLAPFSAFSSLEFLDISTPNLHATPIEPSAIDKINE 101
EK F K + + N+ EN + T + L F+ +STP H+ + A+D +E
Sbjct: 1753 EKEFSKSYAMAKNI-YENYLETHATKG-----TQLGFIGLSTPKTHSQKVSLEALDNAHE 1806
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 25.4 bits (54), Expect = 2.5
Identities = 24/110 (21%), Positives = 44/110 (39%), Gaps = 18/110 (16%)
Query: 278 KKEIVMLH--FYFVGKPWVLPTFS-YSKEWHETLLKTPFYAEYSVKFLKQMTECLSLKDK 334
KK+++ LH Y V + +V P F Y + ++ +Y + F + K K
Sbjct: 199 KKDLIELHASIYSVFRNFVTPEFKFYFHTVKKKIVIDETNRDYGLIFSNDFMRAYNEKQK 258
Query: 335 QKTFEFLA---------------PLLNKKTLLEYVFFRLNRIFKRLKEKF 369
+++F ++ P++NKK + F RI + E F
Sbjct: 259 RESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENF 308
>ref|NP_223164.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE [Helicobacter
pylori J99]
Length = 422
Score = 25.4 bits (54), Expect = 2.5
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 23/100 (23%)
Query: 186 AFSLYEHYLNESDMQIIYESNYNAGFLVVNLKLWRADHLEERLLNLTHQKGQCVFYPEQD 245
+FSL HY N++ Y +L++N++ ADHL H + +
Sbjct: 149 SFSL--HYTNKA---------YPLIYLLINVE---ADHLT------WHCNFENYLNAKLK 188
Query: 246 LLTLACYQKVLILPYIYNTHPFMAN---QKRFIPDKKEIV 282
+LTL + ILP + HP + N QK F +E++
Sbjct: 189 VLTLMPKTSLAILPLKFKEHPIVQNSQAQKIFFDKSEEVL 228
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 25.0 bits (53), Expect = 3.2
Identities = 11/27 (40%), Positives = 19/27 (69%), Gaps = 1/27 (3%)
Query: 165 DFASDKSPKHFQ-IVREKDPRQAFSLY 190
DF SDK+PK Q I+++++ R+ +Y
Sbjct: 357 DFFSDKTPKSLQEILKDEEKRKKLIIY 383
>ref|NP_223831.1| aspartate-semialdehyde dehydrogenase [Helicobacter pylori J99]
Length = 346
Score = 25.0 bits (53), Expect = 3.2
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 54 NLSLENQSKLKETLAPFSAFSSLEFLDISTPNLHATPIEPSAIDKINEAFLQLNIYAK 111
+++ E + LKE S+ D + NL+ TP++ S D + L+ +++ K
Sbjct: 258 SIAFEKEFDLKEVYEVLKNAPSVVVCDDPSHNLYPTPLKASHTDSVFIGRLRKDLFDK 315
>ref|NP_223458.1| GTP CYCLOHYDROLASE II/3,4-DIHYDROXY-2-BUTANONE 4- PHOSPHATE
SYNTHASE [Helicobacter pylori J99]
Length = 344
Score = 25.0 bits (53), Expect = 3.2
Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 3/57 (5%)
Query: 293 WVLPTFSYSKEWHETLLKTPFYAEYSVKFLKQMTECLSLKDKQKTFEFLAPLLNKKT 349
+V SY E +E+LLK + + +FLK T+C + D Q+ + KT
Sbjct: 192 YVSDLISYRLE-NESLLK--MFCQEEREFLKHQTQCYTFLDHQQKNHYAFKFKGAKT 245
>ref|NP_223424.1| MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN A
[Helicobacter pylori J99]
Length = 209
Score = 25.0 bits (53), Expect = 3.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 341 LAPLLNKKTLLEYVFFRLNRIFKRL 365
L PL + +LLEY + RL ++FK++
Sbjct: 33 LMPLKSYPSLLEYQYTRLLKLFKQV 57
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 25.0 bits (53), Expect = 3.2
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 52 VDNLSLENQSKLKETLAPFSAFSSLEFLDISTPNLHATPIEPSAIDKINE 101
+ + + ++ SK KET +P + + LD+ PN ++ ID NE
Sbjct: 302 ISSSASQSVSKEKETHSPTFKVETTQ-LDVKIPNFKQKKVKKDTIDTKNE 350
>ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Helicobacter pylori J99]
Length = 152
Score = 24.3 bits (51), Expect = 5.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 210 GFLVVNLKLWRADHLEERLLNLTHQKGQCVFYPEQD 245
G L + +L +D +E L +L H+K FYP+ +
Sbjct: 7 GQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDN 42
>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 613
Score = 23.9 bits (50), Expect = 7.2
Identities = 51/225 (22%), Positives = 86/225 (37%), Gaps = 38/225 (16%)
Query: 140 DTLFLNDVSESFFIPLDGYYFGAAKDFASDK-SPKHFQIVR-EKDPRQAFSLYEHYLNES 197
DT FLN E FFI Y K+ D + K + I+ P A ++ + LN+
Sbjct: 88 DTRFLNPNKEDFFIDFLSIYSNIPKESLKDALNTKGYTILAYNLTPNMAANIRD--LNKK 145
Query: 198 DMQIIYESNYNAGFLVVNLKLWRADHLEERLLNLT-HQKGQCVFYP--------EQDLLT 248
+ N F + K+W+ L + ++ H Q P E+D LT
Sbjct: 146 FLAFGVFQN----FKDAHDKVWQKQGLNIEVSGVSRHYPYQNSLEPIIGYVQKQEEDKLT 201
Query: 249 LACYQKVLILPYIYNTHPFMANQKRFIPDKKEIVMLHFYFVGKPWVLPTFSYSK----EW 304
L +K + + + + Q+ I K V +F + SY++ +
Sbjct: 202 LTTGKKGV----EKSQNNLLEAQQNGIRSGKRDVSFNF--------IQNHSYTEVERLDG 249
Query: 305 HETLLKTPFYAEYSVKFLKQMTECLSLKDKQKTFEFLAPLLNKKT 349
+E L P + ++ L T KDK + E L ++N K+
Sbjct: 250 YEVYLSVPLKLQREIETLLDKT-----KDKLRAKEILVGIINPKS 289
>ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 345
Score = 23.9 bits (50), Expect = 7.2
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 5/52 (9%)
Query: 51 LVDNLSLENQSKLKETL-----APFSAFSSLEFLDISTPNLHATPIEPSAID 97
L+ N L+N++ LKE L P + S+ NL +PS++D
Sbjct: 155 LIYNTPLDNETSLKEELKLAKELPINHLSAYALSIEKNTNLEKNAKKPSSVD 206
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 23.9 bits (50), Expect = 7.2
Identities = 14/44 (31%), Positives = 22/44 (49%), Gaps = 6/44 (13%)
Query: 122 LFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDGYYFGAAKD 165
L +++ FP ++I LNDV FF+PL + G+ D
Sbjct: 246 LVVSTFFPHKSELIHK------LNDVGFGFFVPLFFIHVGSTLD 283
>ref|NP_223464.1| putative [Helicobacter pylori J99]
Length = 200
Score = 23.9 bits (50), Expect = 7.2
Identities = 14/38 (36%), Positives = 20/38 (51%), Gaps = 3/38 (7%)
Query: 209 AGFLVVNLKLWRADHLEERLLNLTHQKGQCVFYPEQDL 246
+GFL + K + H ERLLN +H K V + + L
Sbjct: 139 SGFLGIYEKCF---HALERLLNRSHSKNLFVVFEHESL 173
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 23.5 bits (49), Expect = 9.4
Identities = 11/45 (24%), Positives = 19/45 (41%), Gaps = 2/45 (4%)
Query: 5 IPIVIAFDNHYAMPAGVSLYSMLACAKTEHPQSQNDSEKLFYKIH 49
+ I+ D HY MP + C ++ ND +L + +H
Sbjct: 209 LKIIATNDTHYTMPNDAKAQEVAMCVAM--GKTLNDKGRLKHSVH 251
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 23.5 bits (49), Expect = 9.4
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 300 YSKEWHETLLKTPFYAEYSVKFLKQMTECLSLKDKQKTF 338
Y K + +T+ + + E K + ECL +K+ +K+F
Sbjct: 46 YKKHFFKTIANSLVFNE------KALLECLEIKELEKSF 78
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 23.5 bits (49), Expect = 9.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 97 DKINEAFLQLNIYAKTRFSKMVMCRL 122
DKI AFL N YA + K ++ +
Sbjct: 418 DKIKAAFLVRNAYAANQVCKFILLEI 443
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 23.5 bits (49), Expect = 9.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 330 SLKDKQKTFEFLAPLLNKKTLLEYVFFRLNRIFKRLKEKFFNS 372
SL DK K F F LN + Y FF IF+ L + + N+
Sbjct: 161 SLLDKLKNFNFKQAFLNLQNQQGYDFFA--PIFEYLLKDYNNN 201
>ref|NP_222943.1| PORPHOBILINOGEN DEAMINASE [Helicobacter pylori J99]
Length = 306
Score = 23.5 bits (49), Expect = 9.4
Identities = 8/13 (61%), Positives = 12/13 (91%)
Query: 216 LKLWRADHLEERL 228
L LW+A+H++ERL
Sbjct: 13 LALWQANHIKERL 25
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,314
Number of Sequences: 1491
Number of extensions: 19950
Number of successful extensions: 110
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 31
length of query: 372
length of database: 494,079
effective HSP length: 79
effective length of query: 293
effective length of database: 376,290
effective search space: 110252970
effective search space used: 110252970
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)