BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646182|ref|NP_208366.1| ABC transporter, putative
[Helicobacter pylori 26695]
(90 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224201.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 176 1e-46
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 49 2e-08
ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Heli... 26 0.16
ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter p... 25 0.28
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 25 0.36
ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 23 0.81
ref|NP_224009.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacte... 20 6.9
ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Heli... 20 6.9
ref|NP_223092.1| UDP-3-O-[3-HYDROXYMYRISTOYL [Helicobacter ... 20 6.9
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 20 9.0
>ref|NP_224201.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 90
Score = 176 bits (445), Expect = 1e-46
Identities = 89/90 (98%), Positives = 89/90 (98%)
Query: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLKVEL 60
MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLKVEL
Sbjct: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLKVEL 60
Query: 61 DCAIPEELYESVVQVFLWLNSVENNVQMSK 90
DCAIPEELYESVVQVFLWLNSVENN QMSK
Sbjct: 61 DCAIPEELYESVVQVFLWLNSVENNAQMSK 90
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 48.9 bits (115), Expect = 2e-08
Identities = 31/84 (36%), Positives = 46/84 (53%), Gaps = 2/84 (2%)
Query: 9 ALAYNMGQDH-APKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK-VELDCAIPE 66
A+A ++H P V+A G +A RI A+E+DI + N L L + V+L+ IPE
Sbjct: 270 AVALKFDEEHPVPVVVAKGTDYLAIRIKGIAREHDIEIIENKTLARELYRDVKLNATIPE 329
Query: 67 ELYESVVQVFLWLNSVENNVQMSK 90
EL+E+V VF + +E Q K
Sbjct: 330 ELFEAVAIVFAQVAKLEQERQKQK 353
>ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Helicobacter pylori J99]
Length = 449
Score = 25.8 bits (55), Expect = 0.16
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 3 KTIKAAALAYNMGQD-----HAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLK 57
K +KA + N+ D H +I S + + IQ+AKE +I + S + S+LK
Sbjct: 53 KYLKALGVEINIPHDPKAINHQDVIIHSAIIKEDNTEIQRAKELEIPILSRKDALYSILK 112
>ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter pylori J99]
Length = 692
Score = 25.0 bits (53), Expect = 0.28
Identities = 13/45 (28%), Positives = 27/45 (59%), Gaps = 2/45 (4%)
Query: 29 EVAKRIIQKAKEYDIALFSNPMLVDSLLKVELDCAIPEELYESVV 73
E+A +I + + +NP+L++ ++KVE++ +PEE V+
Sbjct: 578 EMAFKIAGSMAFKEASRAANPVLLEPMMKVEVE--VPEEYMGDVI 620
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 24.6 bits (52), Expect = 0.36
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 32 KRIIQKAKEYDIALFSNPMLVD 53
K I++K EY+I + S+PM+ D
Sbjct: 322 KSILKKTNEYNIFVDSDPMMSD 343
>ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 23.5 bits (49), Expect = 0.81
Identities = 14/37 (37%), Positives = 19/37 (50%)
Query: 3 KTIKAAALAYNMGQDHAPKVIASGVGEVAKRIIQKAK 39
K +KA Y +GQ+ A KV + V KR+ K K
Sbjct: 89 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEK 125
>ref|NP_224009.1| putative [Helicobacter pylori J99]
Length = 129
Score = 20.4 bits (41), Expect = 6.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 70 ESVVQVFLWLNSVENNVQMS 89
+ + ++FL LNS E+N +S
Sbjct: 21 QKIDEIFLRLNSAEDNSVVS 40
>ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacter pylori J99]
Length = 469
Score = 20.4 bits (41), Expect = 6.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1 MNKTIKAAALAYNMGQDHAPKVIASGVGE 29
+ KT+ L +N+ H + +GVGE
Sbjct: 159 VGKTVIIMELIHNVAYKHNGYSVFAGVGE 187
>ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 20.4 bits (41), Expect = 6.9
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 13/52 (25%)
Query: 10 LAYNMGQDHAPKVIASGVGEVAKRIIQKAKEYDIALFSNPMLVDSLLKVELD 61
L Y G+D K+ VG+ K + +NP +V+++LK +LD
Sbjct: 436 LEYKSGKD---KLFGFFVGQAMKNLKG----------ANPSVVNAILKEKLD 474
>ref|NP_223092.1| UDP-3-O-[3-HYDROXYMYRISTOYL [Helicobacter pylori J99]
Length = 295
Score = 20.4 bits (41), Expect = 6.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 30 VAKRIIQKAKEYDIALFSNP 49
+ K I+ AK Y++ + S+P
Sbjct: 265 LVKAILADAKNYEVLIASDP 284
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 20.0 bits (40), Expect = 9.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 2 NKTIKAAALAYNMGQD 17
N+++KA AY +G D
Sbjct: 1099 NQSVKANIFAYGVGTD 1114
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.131 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,555
Number of Sequences: 1491
Number of extensions: 2836
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 90
length of database: 494,079
effective HSP length: 66
effective length of query: 24
effective length of database: 395,673
effective search space: 9496152
effective search space used: 9496152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)