BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646186|ref|NP_208370.1| hypothetical protein
[Helicobacter pylori 26695]
(142 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224204.1| putative [Helicobacter pylori J99] 231 8e-63
ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter ... 30 0.026
ref|NP_223055.1| putative [Helicobacter pylori J99] 30 0.026
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 28 0.099
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 27 0.29
ref|NP_223990.1| putative [Helicobacter pylori J99] 27 0.29
ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobact... 27 0.29
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 26 0.49
ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori ... 25 0.64
ref|NP_223578.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 24 1.4
ref|NP_222915.1| putative lipopolysaccharide biosynthesis p... 24 1.4
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 24 1.9
ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 23 2.4
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 23 2.4
ref|NP_223787.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 23 4.2
ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 23 4.2
ref|NP_223459.1| putative lipopolysaccharide biosynthesis p... 23 4.2
ref|NP_223755.1| Pyruvate ferrodoxin oxidoreductase [Helico... 22 5.4
ref|NP_223686.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 22 5.4
ref|NP_223009.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylor... 22 5.4
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 22 5.4
ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [H... 22 7.1
ref|NP_223769.1| FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMER... 22 9.3
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 9.3
>ref|NP_224204.1| putative [Helicobacter pylori J99]
Length = 140
Score = 231 bits (588), Expect = 8e-63
Identities = 119/140 (85%), Positives = 129/140 (92%), Gaps = 3/140 (2%)
Query: 1 MLKKLLFIALFLGFLRAEGEHYEIIVELSKAFLKAQEVLTTIHQAYKTCIETGHDRTQIR 60
MLKKLL I+LFLGFLRAEGEHYEII ELSKAFLKA+EVLT I+ KTCIETGHDRTQIR
Sbjct: 1 MLKKLLLISLFLGFLRAEGEHYEIIAELSKAFLKAKEVLTAIN---KTCIETGHDRTQIR 57
Query: 61 LQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKNAKNFEI 120
LQ+ FLENLSQTEQQFDDYFEKDFKSV VLKTLLK++QSLEKTSNKL C+ PKNAKNFEI
Sbjct: 58 LQNDFLENLSQTEQQFDDYFEKDFKSVGVLKTLLKDIQSLEKTSNKLVCVAPKNAKNFEI 117
Query: 121 LEGAITQIIDLEKQMDKFIN 140
LEGAITQII LE+QM++FIN
Sbjct: 118 LEGAITQIIGLEEQMNQFIN 137
>ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter pylori J99]
Length = 290
Score = 30.0 bits (66), Expect = 0.026
Identities = 23/86 (26%), Positives = 38/86 (43%), Gaps = 15/86 (17%)
Query: 12 LGFLRAEGEHYEIIVE----LSKAFLKAQEVLTTIHQAYKTCIETGHDRTQIRLQSAFLE 67
+ + R +G+H I++E L K KAQE+L T +E T I+ A
Sbjct: 1 MDYKRFKGKHANIVIEIISLLEKGVKKAQEILEKPDAGSYTQLENSSGDTPIKADLA--- 57
Query: 68 NLSQTEQQFDDYFEKDFKSVEVLKTL 93
D + E+ F S+E +K++
Sbjct: 58 --------LDKFLEETFLSLENVKSV 75
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 30.0 bits (66), Expect = 0.026
Identities = 23/89 (25%), Positives = 43/89 (47%), Gaps = 5/89 (5%)
Query: 5 LLFIALFLGFLRAEGEHYEIIVELSKAFLKAQEV----LTTIHQAYKTCIETGHDRTQIR 60
LLF FLG+L + +++ ELS A +K E+ + ++ + +E +DR +
Sbjct: 84 LLFENSFLGYLESTSFLFDLFDELSSACIKLNELSFKDIYLDYEKHLEVLEMIYDRYVKK 143
Query: 61 LQS-AFLENLSQTEQQFDDYFEKDFKSVE 88
L+ F + + Q + F + F S+E
Sbjct: 144 LEELGFYDKIMQKKPTILKEFFEHFSSIE 172
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 28.1 bits (61), Expect = 0.099
Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 50 IETGHDRTQIRLQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKL 107
IE G + + + E T++ + +DFK VE+ L+K Q +EK SNKL
Sbjct: 524 IEKGEEALAEKAEKKEKEKAPPTQENYISI--EDFKKVEIKVGLIKEAQRIEK-SNKL 578
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 26.6 bits (57), Expect = 0.29
Identities = 17/86 (19%), Positives = 38/86 (43%), Gaps = 5/86 (5%)
Query: 23 EIIVELSKAFLKAQEVLTTIHQAYKTCIETGHDRTQIRLQSAFLENLSQTEQQFDDYFE- 81
+I++E +K +E+ + +HQ + + + Q++ L Q ++ + Y++
Sbjct: 196 DIVIEETKTQKLQKEIKSKVHQKMEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQK 255
Query: 82 ----KDFKSVEVLKTLLKNLQSLEKT 103
K F E K + K + L +T
Sbjct: 256 LESIKPFLKEEAFKEIKKQIDRLSRT 281
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 26.6 bits (57), Expect = 0.29
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 81 EKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKN 114
EK+ K + ++TLLKN+Q +++ +K A KN
Sbjct: 513 EKNVKLTDKIQTLLKNVQKQKESGSKNALKELKN 546
>ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobacter pylori J99]
Length = 503
Score = 26.6 bits (57), Expect = 0.29
Identities = 22/85 (25%), Positives = 38/85 (43%), Gaps = 5/85 (5%)
Query: 55 DRTQIRLQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKN 114
D Q R AF + S ++ E+ + VEVLK + +EK I
Sbjct: 386 DLAQYRELQAFTQFASDLDEASKKQLERGQRMVEVLKQAPYSPLPIEKQ----VVIIYAG 441
Query: 115 AKNFEILEGAITQIIDLEKQMDKFI 139
AK F + ++ +++D E+Q+ F+
Sbjct: 442 AKGF-LDSVSVKKVVDFEEQLHPFL 465
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 25.8 bits (55), Expect = 0.49
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 65 FLENLSQTEQQFDDYFEKDFKSVEVLK--TLLKNLQSL-EKTSNKLACITPKNAKN 117
FL+ L Q+F++ ++ + K+++ K LK+ ++L EK S +A AKN
Sbjct: 21 FLKTLQTEVQEFENAYQNNLKNLDAAKFANTLKHYENLSEKISRAMAYAQLLFAKN 76
>ref|NP_224046.1| putative PROTEASE IV [Helicobacter pylori J99]
Length = 292
Score = 25.4 bits (54), Expect = 0.64
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 6/62 (9%)
Query: 78 DYFEKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKNAKNFEILEGAITQIIDLEKQMDK 137
D+ K FKS +L +L + E ++ P AK + L GAI D +K++DK
Sbjct: 18 DFITKYFKSFVLLLIVLVFFSAKESAPSE----PPNLAKLY--LNGAIFSTEDFDKEVDK 71
Query: 138 FI 139
+
Sbjct: 72 IL 73
>ref|NP_223578.1| putative [Helicobacter pylori J99]
Length = 381
Score = 24.6 bits (52), Expect = 1.1
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 98 QSLEKTSNKLACITPKNAKNFEILEGAITQ---------IIDLEKQMDKFINK 141
++L SN L + A F+ILEG + + ++LEK+ ++F+NK
Sbjct: 237 KNLSVHSNALKALK-NQAHPFKILEGDVMRHYPYGKFFDALELEKESERFLNK 288
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 24.3 bits (51), Expect = 1.4
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 68 NLSQTEQQFDDYFEKDFKSVEVL-KTLLKNLQSLEKTSNKLACITPKNAKNFEI 120
N + +Q D EK K E L K + KNL+S NK+ + N++ EI
Sbjct: 607 NYDEVKQAQKD-LEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEI 659
Score = 23.5 bits (49), Expect = 2.4
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 29 SKAFLKAQEVLTTIHQAYKTCIETGHDRTQIRLQSAFLENLSQTEQQFDDYFEKDFKSVE 88
+K F KA+E L + + K + G + I + +ENL+ +F + KDF V
Sbjct: 713 NKDFSKAEETLKALKGSVK---DLGINPEWI----SKVENLNAALNEFKNGKNKDFSKVT 765
Query: 89 VLKTLLKN 96
K+ L+N
Sbjct: 766 QAKSDLEN 773
>ref|NP_222915.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 394
Score = 24.3 bits (51), Expect = 1.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 68 NLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQS 99
NL +T+ FD+YF F ++ + +NL++
Sbjct: 197 NLEETQILFDNYFNAGFLALNLKSWRKENLEN 228
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 23.9 bits (50), Expect = 1.9
Identities = 13/42 (30%), Positives = 23/42 (53%)
Query: 81 EKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKNAKNFEILE 122
EK+ + E+ K LK+L++ +K A + KN K ++E
Sbjct: 309 EKEKQETELAKYKLKDLENQKKLKALEAELKKKNTKKPRVVE 350
>ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 351
Score = 23.5 bits (49), Expect = 2.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 58 QIRLQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKLACITPKNAKN 117
Q+R + + L +Q+F YF K K+ LK L +L ++ N A KNA N
Sbjct: 154 QVRERVILVGALKSFKQKF--YFPKPIKTHFSLKDALGDLPPIQSGENGDALGYLKNADN 211
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 23.5 bits (49), Expect = 2.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 74 QQFDDYFEKDFKSVEVLK 91
Q+ DD FE+ K EVLK
Sbjct: 453 QRLDDLFERGIKHQEVLK 470
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 22.7 bits (47), Expect = 4.2
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 71 QTEQQFDDYFEKDFKSVEVLK-TLLKNLQS----------LEKTSNKLACITPKNAKNFE 119
+ E++F + E FK E K +LK ++ LEK K+ + KN
Sbjct: 169 KNEEEFKEILE-GFKRKEKFKGKILKEFENDKHNQSEIVGLEKLKEKIEIVFSKNQTELA 227
Query: 120 ILEGAITQIIDLE 132
+LE +T +E
Sbjct: 228 LLECDLTDFDSIE 240
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 22.7 bits (47), Expect = 4.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 70 SQTEQQFDDYFEKDFKS 86
+ TE FDDYF F +
Sbjct: 413 NNTENDFDDYFTASFNN 429
>ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 792
Score = 22.7 bits (47), Expect = 4.2
Identities = 15/46 (32%), Positives = 26/46 (55%), Gaps = 6/46 (13%)
Query: 65 FLENLSQTEQQFDDYFEKDFKSVEV-----LKTLLKNLQSLEKTSN 105
FL+ ++ TEQ+F ++S EV +T++ N + L+KT N
Sbjct: 35 FLKKVTTTEQKFSSSAPISWQSEEVRNSTSSRTVISN-KELKKTGN 79
>ref|NP_223459.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 292
Score = 22.7 bits (47), Expect = 4.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 110 ITPKNAKNFEILEGAITQIID 130
++PK KNF + E IT +++
Sbjct: 19 LSPKTCKNFSLKETHITPLLE 39
>ref|NP_223755.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 314
Score = 22.3 bits (46), Expect = 5.4
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 49 CIETGHDRTQIRLQSAFLENLSQTEQQ 75
C+E GHD T I L + EN + T Q
Sbjct: 125 CMERGHDMTYICLDN---ENYANTGGQ 148
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 22.3 bits (46), Expect = 5.4
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
Query: 5 LLFIALFLGFLRAEGEHYEIIVELSKAFLKAQEVLTTIHQAYK 47
+L ++LFL LRA EH V+L F + + L + + YK
Sbjct: 8 VLVLSLFLDPLRAVEEHETDAVDLFLIFNQINQ-LNQVIETYK 49
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 22.3 bits (46), Expect = 5.4
Identities = 12/37 (32%), Positives = 19/37 (50%)
Query: 85 KSVEVLKTLLKNLQSLEKTSNKLACITPKNAKNFEIL 121
K EV + + + ++ LE L I PK+ K EI+
Sbjct: 1126 KLKEVKEAINQGVEGLEANVKDLELIIPKDLKATEIM 1162
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 22.3 bits (46), Expect = 5.4
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 84 FKSVEVLKTLLKNLQSLEK 102
F E+L+T LKNL + EK
Sbjct: 439 FSKEEILQTPLKNLNAEEK 457
>ref|NP_223009.1| putative [Helicobacter pylori J99]
Length = 331
Score = 22.3 bits (46), Expect = 5.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 78 DYFEKDFKSVEVLKTL 93
DYF +DFKS+++ + L
Sbjct: 24 DYFFRDFKSIDLPQKL 39
>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 576
Score = 22.3 bits (46), Expect = 5.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 100 LEKTSNKLACITPKNAKNFEIL 121
LE+ S+ L C+ KN F+++
Sbjct: 460 LEQKSDDLGCVWTKNTAPFDVV 481
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 22.3 bits (46), Expect = 5.4
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 109 CITPKNAKNFEILEGAITQIIDLEKQMDK 137
C+ P N +N E L+ ++DL DK
Sbjct: 503 CLEP-NLQNLEFLQSFFLSMLDLAPSRDK 530
>ref|NP_223991.1| NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 273
Score = 21.9 bits (45), Expect = 7.1
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 61 LQSAFLENLSQTEQQFDDYFEKDFKSVEVLKTLLKNLQSLEKTSNKLACIT 111
L+ A E+L + F+ EKDFK+ ++ + + S EK + +L +T
Sbjct: 7 LECALKEDLGHGDL-FERVLEKDFKATAFVRAKQEGVFSGEKYALELLQMT 56
>ref|NP_223769.1| FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter
pylori J99]
Length = 185
Score = 21.6 bits (44), Expect = 9.3
Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 5/29 (17%)
Query: 23 EIIVELSKAFLKAQ-----EVLTTIHQAY 46
+IIV L KA LKAQ E++ +AY
Sbjct: 45 QIIVGLEKAVLKAQIGEWEEIVIAPEEAY 73
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 21.6 bits (44), Expect = 9.3
Identities = 17/77 (22%), Positives = 37/77 (47%), Gaps = 15/77 (19%)
Query: 22 YEIIVELSKAFLKA-QEVLTTIHQAYKTCIETGHDRTQIRLQSA-----------FLENL 69
++I+ L + KA ++++ TI +K + G + Q+ L+ FL+N
Sbjct: 129 FKILRTLLPIYAKALKDLMRTIKNVFK---QKGQAQAQLILKEQIKELSQKEHFNFLKNY 185
Query: 70 SQTEQQFDDYFEKDFKS 86
+ +++ + YF KD +
Sbjct: 186 NLVDEKGEIYFAKDLST 202
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.136 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,665
Number of Sequences: 1491
Number of extensions: 6397
Number of successful extensions: 49
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 31
length of query: 142
length of database: 494,079
effective HSP length: 69
effective length of query: 73
effective length of database: 391,200
effective search space: 28557600
effective search space used: 28557600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)