BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646193|ref|NP_208377.1| hypothetical protein
[Helicobacter pylori 26695]
(112 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223812.1| putative [Helicobacter pylori J99] 25 0.41
ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 25 0.53
ref|NP_223387.1| putative [Helicobacter pylori J99] 24 0.91
ref|NP_222881.1| putative [Helicobacter pylori J99] 22 3.5
ref|NP_223168.1| putative transporter [Helicobacter pylori ... 22 4.5
ref|NP_224181.1| putative [Helicobacter pylori J99] 21 7.7
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 21 7.7
ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [H... 21 7.7
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 25.4 bits (54), Expect = 0.41
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 20/49 (40%)
Query: 19 LSFFTPLFWLLLGSLLGWCSLLMKRTAKIARPMRKVIARYHIFLVLFAS 67
+ + + W+L+GS+LG C H F+VLFAS
Sbjct: 111 MGYLPSILWILIGSVLGGC--------------------VHDFVVLFAS 139
>ref|NP_223444.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 454
Score = 25.0 bits (53), Expect = 0.53
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 69 SAFCFANRFACSNLYCSAFSFASYFAFNFRRKVA 102
++FCF RF NL+ +F +NFR+ ++
Sbjct: 111 NSFCFGFRFFDKNLFNPSFLKHFLRDYNFRKNIS 144
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 24.3 bits (51), Expect = 0.91
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 80 SNLYCSAFSFASYFAFNFRRKVAIKTHAG 108
S+L SAFS + F FNFR+++ + G
Sbjct: 129 SDLEKSAFSKINQFEFNFRKEMHERIERG 157
>ref|NP_222881.1| putative [Helicobacter pylori J99]
Length = 242
Score = 22.3 bits (46), Expect = 3.5
Identities = 8/26 (30%), Positives = 17/26 (64%)
Query: 19 LSFFTPLFWLLLGSLLGWCSLLMKRT 44
L+FF +F+ GS++ +C L+ ++
Sbjct: 32 LAFFGAIFYYNGGSIVNYCQTLLPQS 57
>ref|NP_223168.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 21.9 bits (45), Expect = 4.5
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 7/47 (14%)
Query: 7 YCSFYGSCGWGFLSFFTPLFWLLLGSL-----LGWCSLLMKRTAKIA 48
+ SF +G+L F T F + LG L +GW +L K+ + +A
Sbjct: 364 FLSFAHKSVFGWLDFITSSFLMPLGGLFSVLFIGW--ILNKKRSFLA 408
>ref|NP_224181.1| putative [Helicobacter pylori J99]
Length = 367
Score = 21.2 bits (43), Expect = 7.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 15 GWGFLSFF 22
GWGF+ FF
Sbjct: 253 GWGFIKFF 260
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 21.2 bits (43), Expect = 7.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 21 FFTPLFWLLLGSLL 34
FF PLF++ +GS L
Sbjct: 269 FFVPLFFIHVGSTL 282
>ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 21.2 bits (43), Expect = 7.7
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 14 CGWGFLS 20
CGWG+LS
Sbjct: 170 CGWGYLS 176
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.338 0.143 0.512
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,106
Number of Sequences: 1491
Number of extensions: 3430
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 8
length of query: 112
length of database: 494,079
effective HSP length: 66
effective length of query: 46
effective length of database: 395,673
effective search space: 18200958
effective search space used: 18200958
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 43 (21.2 bits)