BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646194|ref|NP_208378.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(155 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224211.1| putative [Helicobacter pylori J99] 272 3e-75
ref|NP_224212.1| putative [Helicobacter pylori J99] 185 4e-49
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 25 0.97
ref|NP_223702.1| putative [Helicobacter pylori J99] 25 0.97
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 24 1.7
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 23 2.8
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 23 2.8
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 23 2.8
ref|NP_222809.1| putative keto-acid dehydrogenase [Helicoba... 23 2.8
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 23 3.7
ref|NP_222762.1| HYDROGENASE EXPRESSION/FORMATION PROTEIN [... 23 3.7
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 23 4.8
ref|NP_224109.1| putative [Helicobacter pylori J99] 22 6.3
>ref|NP_224211.1| putative [Helicobacter pylori J99]
Length = 209
Score = 272 bits (696), Expect = 3e-75
Identities = 135/149 (90%), Positives = 141/149 (94%)
Query: 1 MNEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLK 60
MNE+LT+ TEY+RYGHDYAKYPRRIAEELQ YGGNSFANFFRDEGVLYKEILCDACDHL
Sbjct: 1 MNEELTSLTEYQRYGHDYAKYPRRIAEELQRYGGNSFANFFRDEGVLYKEILCDACDHLD 60
Query: 61 VNYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIAST 120
+NYNE SATSLIEQNMLSKLLKDSLEKMS REIKELC+ LGM NIDKVIGENKQVLIAS
Sbjct: 61 INYNERSATSLIEQNMLSKLLKDSLEKMSGREIKELCDGLGMPNIDKVIGENKQVLIASV 120
Query: 121 LTLFKAGGSHSYALAVSVADAMVRQTLGH 149
LTLFKAGGSHSYALAV+VADAMVRQTLGH
Sbjct: 121 LTLFKAGGSHSYALAVAVADAMVRQTLGH 149
>ref|NP_224212.1| putative [Helicobacter pylori J99]
Length = 253
Score = 185 bits (470), Expect = 4e-49
Identities = 93/147 (63%), Positives = 115/147 (77%), Gaps = 3/147 (2%)
Query: 2 NEDLTNSTEYKRYGHDYAKYPRRIAEELQHYGGNSFANFFRDEGVLYKEILCDACDHLKV 61
NE LT+S EYKR+G DYAKY RIAEELQ+YG NSFA+F + EGVLYKEILCD CD LKV
Sbjct: 38 NEKLTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKV 97
Query: 62 NYNEESATSLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIASTL 121
NYN+++ T+LIEQNMLSK+L+ SLE+M E+KE+C+EL + N D + N+Q L A+TL
Sbjct: 98 NYNKKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNL---NRQALSAATL 154
Query: 122 TLFKAGGSHSYALAVSVADAMVRQTLG 148
TLFK GG SY LAV VA+A+ + LG
Sbjct: 155 TLFKMGGFKSYQLAVIVANAVAKTILG 181
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 25.0 bits (53), Expect = 0.97
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 72 IEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQV 115
+ + M+SK+++ L KM++ E+ L L V+ ENKQ+
Sbjct: 17 LPKEMISKVIQGCLLKMAQNELDPLARYL-------VVEENKQL 53
>ref|NP_223702.1| putative [Helicobacter pylori J99]
Length = 616
Score = 25.0 bits (53), Expect = 0.97
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 41 FRDEGVLYKEILCDACDH----------LKVNYNEESAT---SLIEQNMLSKLLKDSLEK 87
F E L + +CDA DH L ++ +S T +L+ N L LL+D ++
Sbjct: 416 FSKENALISQGVCDALDHASPEYAMGGKLGIDATSKSNTPYPTLLNDNALLALLQDKMQN 475
Query: 88 M 88
+
Sbjct: 476 I 476
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 24.3 bits (51), Expect = 1.7
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 50 EILCDACDHLKVNYNEESATSLIEQNMLS 78
E+L A D+L +N NEE +I+ NM S
Sbjct: 635 ELLKQAKDNLSINLNEEGKV-IIQDNMHS 662
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 23.5 bits (49), Expect = 2.8
Identities = 14/61 (22%), Positives = 30/61 (48%), Gaps = 8/61 (13%)
Query: 70 SLIEQNMLSKLLKDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIASTLTLFKAGGS 129
SL++ +++ +D+ E+M + +K ELG+ E K ++ + T F+ +
Sbjct: 52 SLVKTRYQAQIEQDAQEEMIQEVLKNALKELGV--------ETKDLIGSPNFTKFEKKDT 103
Query: 130 H 130
H
Sbjct: 104 H 104
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 23.5 bits (49), Expect = 2.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 63 YNEESATSLIEQNMLSKLLKDSLEKMSRREIKE 95
+ EE+ T LI+ K +DS + +S E E
Sbjct: 127 HQEETQTDLIDDETSEKTQQDSPQDLSNEEATE 159
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 23.5 bits (49), Expect = 2.8
Identities = 13/34 (38%), Positives = 17/34 (49%), Gaps = 2/34 (5%)
Query: 28 ELQHYGGNSFANFFRDEGVLYKEILCDACDHLKV 61
EL HY + A+ F D + Y+ DHLKV
Sbjct: 151 ELIHYIKSCLASLFTDRAISYR--ASRGFDHLKV 182
>ref|NP_222809.1| putative keto-acid dehydrogenase [Helicobacter pylori J99]
Length = 314
Score = 23.5 bits (49), Expect = 2.8
Identities = 12/37 (32%), Positives = 20/37 (53%)
Query: 82 KDSLEKMSRREIKELCNELGMTNIDKVIGENKQVLIA 118
KD E+ R ++EL G+ +I + E+ + LIA
Sbjct: 182 KDKKEEYERLSLEELLKTSGIISIHAPLNESTRDLIA 218
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 23.1 bits (48), Expect = 3.7
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 57 DHLKVNYNEESATSLIEQ----NMLSKLLKDSLEKMSRREIKELCNEL-GMTNIDKV-IG 110
D + N NE T+ E N L DSLE +E KE +L + + V
Sbjct: 20 DIFRNNTNETDLTNSFEHGKENNNLIPAKSDSLESFKEQENKEKAKQLMDLKALQSVYFS 79
Query: 111 ENKQVLIASTLTLFKAGGSHSYALAVSVADAMV 143
+N+++ + L+ AG ++ L ++ +
Sbjct: 80 KNRKLQDNNFNVLYVAGNTNKIRLRYAMTTTFI 112
>ref|NP_222762.1| HYDROGENASE EXPRESSION/FORMATION PROTEIN [Helicobacter pylori J99]
Length = 332
Score = 23.1 bits (48), Expect = 3.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 71 LIEQNMLSKLLKDSLEKMSRREIKELCNE-LGMTNIDKVIGENKQVLIASTLTLFKAGGS 129
L++ LS L D+L +R + + NE + + VI E K L T + + G
Sbjct: 199 LLKPLFLSDLKIDALRDATRGGLASVLNEWANSSRVKIVIEEEKIPLKEETKGICEILGL 258
Query: 130 HSYALA 135
YALA
Sbjct: 259 EPYALA 264
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 22.7 bits (47), Expect = 4.8
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 77 LSKLLKD--SLEKMSRREIKELCNELGMTNIDKVIGENKQVLIASTLTLFKAGG 128
L+K+ K +L ++ +RE K L +I+K +NK L AS L + GG
Sbjct: 20 LNKISKKFFTLNQILKRE-KPLKRHKKTKSIEKPFNKNKSFLKASVLLIGALGG 72
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 22.3 bits (46), Expect = 6.3
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 42 RDEGVLYKEILCDACDHLKVNYNEE 66
+ + ++YK+ +HL V YN++
Sbjct: 124 KTQNLIYKDNSLSVSEHLLVKYNDD 148
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,928
Number of Sequences: 1491
Number of extensions: 6765
Number of successful extensions: 30
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 13
length of query: 155
length of database: 494,079
effective HSP length: 70
effective length of query: 85
effective length of database: 389,709
effective search space: 33125265
effective search space used: 33125265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)