BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646205|ref|NP_208380.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(207 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224212.1| putative [Helicobacter pylori J99] 308 5e-86
ref|NP_224211.1| putative [Helicobacter pylori J99] 264 1e-72
ref|NP_223702.1| putative [Helicobacter pylori J99] 29 0.10
ref|NP_222967.1| putative [Helicobacter pylori J99] 29 0.10
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 28 0.18
ref|NP_223812.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 24 2.6
ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99] 24 3.3
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 23 4.4
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 23 7.4
ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Heli... 23 7.4
ref|NP_222805.1| MALONYL COA-ACYL CARRIER PROTEIN TRANSACYL... 23 7.4
ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 22 9.7
>ref|NP_224212.1| putative [Helicobacter pylori J99]
Length = 253
Score = 308 bits (790), Expect = 5e-86
Identities = 154/208 (74%), Positives = 175/208 (84%), Gaps = 1/208 (0%)
Query: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
+TSS EY+R+G DYAKY RIAEELQ YG NSF +F + EGVLYKEILCD CD LKVNYN
Sbjct: 41 LTSSIEYKRHGDDYAKYAERIAEELQYYGSNSFASFIKGEGVLYKEILCDVCDKLKVNYN 100
Query: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKLGKQALSTAALTLFRMG 120
KK++TTLIE+NMLS IL++SLE+M DEE++E+CDEL +KNT+ L +QALS A LTLF+MG
Sbjct: 101 KKTETTLIEQNMLSKILERSLEEMDDEEVKEMCDELSIKNTDNLNRQALSAATLTLFKMG 160
Query: 121 GFKSYQLALIVANAVIKAIFQRGLSLGANAALTRGLSILTGPIGWIITGVWTAIDIAGPA 180
GFKSYQLA+IVANAV K I RGLSL N LTR LS LTGP+GWIITGVWTAIDIAGPA
Sbjct: 161 GFKSYQLAVIVANAVAKTILGRGLSLAGNQVLTRTLSFLTGPVGWIITGVWTAIDIAGPA 220
Query: 181 YRVTIPACILVATLRLKA-QANEIKNIL 207
YRVTIPACI+VATLRLK QANE K L
Sbjct: 221 YRVTIPACIVVATLRLKTQQANEDKKSL 248
>ref|NP_224211.1| putative [Helicobacter pylori J99]
Length = 209
Score = 264 bits (674), Expect = 1e-72
Identities = 132/204 (64%), Positives = 161/204 (78%), Gaps = 4/204 (1%)
Query: 1 MTSSTEYQRYGYDYAKYPRRIAEELQRYGGNSFMNFFRDEGVLYKEILCDACDHLKVNYN 60
+TS TEYQRYG+DYAKYPRRIAEELQRYGGNSF NFFRDEGVLYKEILCDACDHL +NYN
Sbjct: 5 LTSLTEYQRYGHDYAKYPRRIAEELQRYGGNSFANFFRDEGVLYKEILCDACDHLDINYN 64
Query: 61 KKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKL---GKQALSTAALTLF 117
++S T+LIE+NMLS +L+ SLEKMS EI+ELCD LG+ N +K+ KQ L + LTLF
Sbjct: 65 ERSATSLIEQNMLSKLLKDSLEKMSGREIKELCDGLGMPNIDKVIGENKQVLIASVLTLF 124
Query: 118 RMGGFKSYQLALIVANAVIKAIFQRGL-SLGANAALTRGLSILTGPIGWIITGVWTAIDI 176
+ GG SY LA+ VA+A+++ GL S+ AL + L IL GPIGW+ITG +I++
Sbjct: 125 KAGGSHSYALAVAVADAMVRQTLGHGLSSVVGKVALKKTLDILAGPIGWVITGALVSINL 184
Query: 177 AGPAYRVTIPACILVATLRLKAQA 200
AGPAYRVT+PAC+LVATLR K +A
Sbjct: 185 AGPAYRVTVPACVLVATLRKKLKA 208
>ref|NP_223702.1| putative [Helicobacter pylori J99]
Length = 616
Score = 28.9 bits (63), Expect = 0.10
Identities = 18/61 (29%), Positives = 30/61 (48%), Gaps = 13/61 (21%)
Query: 37 FRDEGVLYKEILCDACDH----------LKVNYNKKSDT---TLIEENMLSSILQKSLEK 83
F E L + +CDA DH L ++ KS+T TL+ +N L ++LQ ++
Sbjct: 416 FSKENALISQGVCDALDHASPEYAMGGKLGIDATSKSNTPYPTLLNDNALLALLQDKMQN 475
Query: 84 M 84
+
Sbjct: 476 I 476
>ref|NP_222967.1| putative [Helicobacter pylori J99]
Length = 172
Score = 28.9 bits (63), Expect = 0.10
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 53 DHLKVNYNKKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTN 102
D++K N +K+ + L + +S ++ ++LEK+ + +++ C + VK TN
Sbjct: 46 DYIKQNKSKEEASILARQGFVS-VIGRALEKIIELLLKDFCIKNNVKMTN 94
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 28.1 bits (61), Expect = 0.18
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 40 EGVLYKEILCDACDHLKVNYNKKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVK 99
E VL KE++ +LK++Y+K + I+ + +K LEK+ E E G+
Sbjct: 368 EDVLRKEVIMQMMSNLKLDYSKIEEKFSID---FKAHFKKELEKLKPYE------EAGLL 418
Query: 100 NTNKLGKQALSTAALTLFRM 119
+ N G + T + + M
Sbjct: 419 SFNSKGFEMTRTGGMLVRNM 438
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 25.4 bits (54), Expect = 1.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 97 GVKNTNKLGKQALSTAALTLFRMGGFKSYQLALIVANAVIKAIFQRGL 144
GV N L AL + LF+MG FK ++ + A ++ F G+
Sbjct: 547 GVSN-QMLAGMALLLVTVVLFKMGRFKGAIISALPAVLILAITFYSGI 593
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 24.3 bits (51), Expect = 2.6
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 116 LFRMGGFKSYQL-ALIVANAVIKAIFQRGLSLGAN-------AALTRGLSILTGPIGWII 167
LF G +S +L A + N +K + + ++ N A+T GL L I
Sbjct: 393 LFETSGLESGELLAKLPFNRHLKKLIESKIADVCNISSSRYGGAITAGL-FLNEFIRDEF 451
Query: 168 TGVWTAIDIAGPAY 181
W IDIAGPAY
Sbjct: 452 KDKWLHIDIAGPAY 465
>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
Length = 451
Score = 23.9 bits (50), Expect = 3.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 62 KSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKLG 105
K +L++ + I Q + E+M E ++ ELGV+ + +G
Sbjct: 48 KVPLSLVKTRYQAQIEQDAQEEMIQEVLKNALKELGVETKDLIG 91
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 23.5 bits (49), Expect = 4.4
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 49 CDACDHLKVNYNKKSDTTLIEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKLGK 106
C C V N + + N K E +DE +ELC++ G + K +
Sbjct: 572 CPKCGGELVKKNSRYGEFIACNNYPKCKYIKQTENANDEAKQELCEKCGGEMVQKFSR 629
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 22.7 bits (47), Expect = 7.4
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 68 IEENMLSSILQKSLEKMSDEEIRELCDELGVKNTNKL 104
+ + M+S ++Q L KM+ E+ L L V+ +L
Sbjct: 17 LPKEMISKVIQGCLLKMAQNELDPLARYLVVEENKQL 53
>ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Helicobacter pylori J99]
Length = 453
Score = 22.7 bits (47), Expect = 7.4
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 98 VKNTNKLGKQALSTAALTLFRMGGFKSYQLALIVANAVIKAIFQRGLSLGANAALTRGLS 157
++N ++ G + + F MG I N K I G S G+ AA+ GL+
Sbjct: 82 IENLHQNGMAGFGLSNMDEFAMGSTTESSCYGITKNPRDKNIVPGGSSGGSAAAVAGGLT 141
Query: 158 I 158
+
Sbjct: 142 V 142
>ref|NP_222805.1| MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE [Helicobacter pylori
J99]
Length = 309
Score = 22.7 bits (47), Expect = 7.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 124 SYQLALIVANAVIKAIFQRGLSLGANAALT 153
+YQL AN +K +F G SLG +A++
Sbjct: 71 AYQLLNKQANGGLKPVFALGHSLGEVSAVS 100
>ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 217
Score = 22.3 bits (46), Expect = 9.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 102 NKLGKQALSTAALTLFRMGGFKSYQLALIVANAVIKAIFQRGLSLG 147
N++G AL A L L +GG Q L+ ++ + LSLG
Sbjct: 79 NEIGLSALECAILALGFLGGGYMSQSFLLGFKSLASIQRESALSLG 124
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,725
Number of Sequences: 1491
Number of extensions: 8485
Number of successful extensions: 33
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 13
length of query: 207
length of database: 494,079
effective HSP length: 74
effective length of query: 133
effective length of database: 383,745
effective search space: 51038085
effective search space used: 51038085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)