BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646196|ref|NP_208381.1| hypothetical protein
[Helicobacter pylori 26695]
         (39 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_224212.1|  putative [Helicobacter pylori J99]               56  2e-10
ref|NP_223992.1|  QUINOLINATE SYNTHETASE [Helicobacter pylor...    21  4.8
ref|NP_223887.1|  RIBONUCLEASE II FAMILY PROTEIN [Helicobact...    20  8.2
ref|NP_223072.1|  COPPER-TRANSPORTING P-TYPE ATPASE [Helicob...    20  8.2

>ref|NP_224212.1| putative [Helicobacter pylori J99]
          Length = 253

 Score = 55.8 bits (133), Expect = 2e-10
 Identities = 26/39 (66%), Positives = 31/39 (78%)

Query: 1  MAYRYDSDLEFLKRLSSSDLKDLFDALVYDEDGTLRMNE 39
          MAY+YD DLEFLK+L SSDL DLF+ LV+ +DG  R NE
Sbjct: 1  MAYKYDRDLEFLKQLESSDLLDLFEVLVFGKDGEKRHNE 39



>ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylori J99]
          Length = 336

 Score = 21.2 bits (43), Expect = 4.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 7   SDLEFLKRLSSSDLKDLFDAL 27
           S L F   ++ + LKDLF+ L
Sbjct: 283 STLAFCPTMNETTLKDLFEVL 303



>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
          Length = 644

 Score = 20.4 bits (41), Expect = 8.2
 Identities = 7/18 (38%), Positives = 11/18 (60%)

Query: 15  LSSSDLKDLFDALVYDED 32
           +   D KD  DA+ YD++
Sbjct: 222 IDPKDAKDFDDAIFYDKE 239



>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
          Length = 745

 Score = 20.4 bits (41), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 11  FLKRLSSSDLKDLFDALVYDEDGTL 35
           F K   S +   L + +V+D+ GTL
Sbjct: 416 FFKDAKSLEKARLVNTIVFDKTGTL 440



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.319    0.138    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,384
Number of Sequences: 1491
Number of extensions: 896
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 39
length of database: 494,079
effective HSP length: 15
effective length of query: 24
effective length of database: 471,714
effective search space: 11321136
effective search space used: 11321136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)