BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644649|ref|NP_206818.1| hypothetical protein
[Helicobacter pylori 26695]
(87 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222736.1| putative [Helicobacter pylori J99] 169 7e-45
ref|NP_223770.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_222860.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 22 2.4
ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 22 3.1
ref|NP_223857.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223127.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_223043.1| putative [Helicobacter pylori J99] 22 3.1
ref|NP_222842.1| L-serine transporter, similar to E. coli n... 22 3.1
ref|NP_223995.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223971.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223443.1| putative Outer membrane protein [Helicobac... 21 4.1
ref|NP_223057.1| RIBOFLAVIN KINASE [Helicobacter pylori J99] 21 4.1
ref|NP_223019.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicoba... 21 5.3
ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter p... 20 6.9
ref|NP_223505.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_223273.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 20 6.9
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 20 9.1
ref|NP_223270.1| putative [Helicobacter pylori J99] 20 9.1
ref|NP_223200.1| cag island protein [Helicobacter pylori J99] 20 9.1
>ref|NP_222736.1| putative [Helicobacter pylori J99]
Length = 87
Score = 169 bits (429), Expect = 7e-45
Identities = 86/87 (98%), Positives = 87/87 (99%)
Query: 1 MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSV 60
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSV
Sbjct: 1 MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSV 60
Query: 61 LEFFDEDIADIIVAKSKIKTKTKCYRA 87
LEFFDEDIADII+AKSKIKTKTKCYRA
Sbjct: 61 LEFFDEDIADIIIAKSKIKTKTKCYRA 87
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 23.1 bits (48), Expect = 1.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 9 KNLREISVKEKFLWLNAKSY 28
+N KE+ LWL A SY
Sbjct: 218 RNKSYAEAKERLLWLEANSY 237
>ref|NP_222860.1| putative [Helicobacter pylori J99]
Length = 255
Score = 23.1 bits (48), Expect = 1.1
Identities = 17/74 (22%), Positives = 34/74 (44%), Gaps = 2/74 (2%)
Query: 7 SVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDE 66
++KNL + K L + L S+ P ILLP + + + ++ + L L F+
Sbjct: 67 AIKNLNALFSKRGVLSFSLPISLESLLLPKILLPMVFFIFSLFWFVASVRLGYYL--FNA 124
Query: 67 DIADIIVAKSKIKT 80
+ + + + +KT
Sbjct: 125 QSSVLFILHTALKT 138
>ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 526
Score = 21.9 bits (45), Expect = 2.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 42 IDLLSAFLLYLGFLALF 58
I L+ F+L +GF+AL+
Sbjct: 357 IALVGGFILVMGFMALY 373
>ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 48 FLLYLGFLALFSVLEFFDEDIAD 70
FLL + F +S + F +DIAD
Sbjct: 305 FLLIIFFAYFYSSIVFNSKDIAD 327
>ref|NP_223857.1| putative [Helicobacter pylori J99]
Length = 159
Score = 21.6 bits (44), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 46 SAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKTK 81
SAF++ +GF+ L+ V E F + + +AK + K
Sbjct: 69 SAFVV-MGFIILYGVYEIFFVCLCKMSLAKLVFRIK 103
>ref|NP_223127.1| putative [Helicobacter pylori J99]
Length = 202
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 39 LPWIDLLSAFLLYLGFLA 56
L +I LLS FL +GF+A
Sbjct: 56 LAYIVLLSLFLCAIGFIA 73
>ref|NP_223043.1| putative [Helicobacter pylori J99]
Length = 220
Score = 21.6 bits (44), Expect = 3.1
Identities = 12/31 (38%), Positives = 15/31 (47%)
Query: 35 PFILLPWIDLLSAFLLYLGFLALFSVLEFFD 65
PF LLP L ++ F L + L FFD
Sbjct: 15 PFFLLPVKTLFLLGGVFSAFFILIAGLVFFD 45
>ref|NP_222842.1| L-serine transporter, similar to E. coli nhaB [Helicobacter pylori
J99]
Length = 413
Score = 21.6 bits (44), Expect = 3.1
Identities = 7/23 (30%), Positives = 12/23 (51%)
Query: 22 WLNAKSYLISVFAPFILLPWIDL 44
W A +++ F F+L W+ L
Sbjct: 181 WQGANLFVVPSFKEFVLAIWLTL 203
>ref|NP_223995.1| putative [Helicobacter pylori J99]
Length = 183
Score = 21.2 bits (43), Expect = 4.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 9 KNLREISVKEKFLWLNA 25
K R ++V E+F WLN+
Sbjct: 51 KTKRSLAVLEEFDWLNS 67
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 21.2 bits (43), Expect = 4.1
Identities = 15/42 (35%), Positives = 21/42 (49%)
Query: 6 ASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSA 47
+ VKNL E S + N +L+ F LL +DL+SA
Sbjct: 136 SGVKNLEEASNALEVQEKNNALFLLKEPKLFHLLSRLDLMSA 177
>ref|NP_223443.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 499
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/34 (26%), Positives = 17/34 (49%), Gaps = 1/34 (2%)
Query: 9 KNLREISVKEKFLWLNAKSYLISVFAPFILLPWI 42
KN + +K+KF W N ++ ++ F W+
Sbjct: 342 KNAHSLMIKQKFEW-NEYNFGFGIYKSFGNANWM 374
>ref|NP_223057.1| RIBOFLAVIN KINASE [Helicobacter pylori J99]
Length = 280
Score = 21.2 bits (43), Expect = 4.1
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 12 REISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFD 65
+E+ + L + K Y P + + F +YL ++ + LEF D
Sbjct: 33 KELKDPKALLIIEKKHYTKGYLTPLKYRAKLVKMPLFFVYLEEISQLNALEFLD 86
>ref|NP_223019.1| putative [Helicobacter pylori J99]
Length = 251
Score = 21.2 bits (43), Expect = 4.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 30 ISVFAPFILLPWIDLLSAFLLYLGFLALFS 59
I + F L I +L+ L LGF+++FS
Sbjct: 113 IFIVLSFYALNIITILNFKALILGFISIFS 142
>ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori J99]
Length = 293
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 56 ALFSVLEFFDEDIADIIVAKSK 77
ALF LE F E + ++I+ K
Sbjct: 73 ALFKALENFSELLIEVILTHKK 94
>ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter pylori J99]
Length = 410
Score = 20.4 bits (41), Expect = 6.9
Identities = 13/39 (33%), Positives = 16/39 (40%)
Query: 2 IILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLP 40
IIL+ K FL + AK Y I+ P L P
Sbjct: 242 IILATGANPTLIKKTKNDFLMMGAKGYSITFKMPEELKP 280
>ref|NP_223505.1| putative [Helicobacter pylori J99]
Length = 228
Score = 20.4 bits (41), Expect = 6.9
Identities = 10/24 (41%), Positives = 13/24 (53%)
Query: 30 ISVFAPFILLPWIDLLSAFLLYLG 53
I ILL WI L++ +YLG
Sbjct: 169 IKTIGAIILLFWIFLMAYDRVYLG 192
>ref|NP_223273.1| putative [Helicobacter pylori J99]
Length = 189
Score = 20.4 bits (41), Expect = 6.9
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 36 FILLPWIDLLSAF 48
FIL W+ LL AF
Sbjct: 6 FILALWVGLLGAF 18
>ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 298
Score = 20.4 bits (41), Expect = 6.9
Identities = 8/31 (25%), Positives = 18/31 (57%)
Query: 54 FLALFSVLEFFDEDIADIIVAKSKIKTKTKC 84
F + S + +++ D+I+ SK+ T+ +C
Sbjct: 26 FCEIISSISEENKEPYDVILVSSKVCTQGRC 56
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 20.0 bits (40), Expect = 9.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 49 LLYLGFLALFSVLEFFDEDIADIIVAKSK 77
LL GFLA F + +D+ +AK +
Sbjct: 4 LLKKGFLAFFLSVYLRADDLVTYTIAKEE 32
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 3 ILSASVKNLREISVKEKFLWLNAKSYLISV 32
+ + SVKNL++ ++ L L + L+S+
Sbjct: 268 LTNLSVKNLKKTTIDAPNLQLRERQDLVSL 297
>ref|NP_223200.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 2 IILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLP 40
++ S +++ L I+ FL+ ++ +F PF P
Sbjct: 90 LLESETMELLHAIAENPNFLFSKFDRSILGIFLPFFSKP 128
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.330 0.144 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,779
Number of Sequences: 1491
Number of extensions: 2936
Number of successful extensions: 22
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of query: 87
length of database: 494,079
effective HSP length: 63
effective length of query: 24
effective length of database: 400,146
effective search space: 9603504
effective search space used: 9603504
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 40 (20.0 bits)