BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644794|ref|NP_206964.1| hypothetical protein
[Helicobacter pylori 26695]
(173 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222872.1| putative histidine kinase sensor protein [... 327 8e-92
ref|NP_223265.1| putative secretion/efflux abc transporter,... 31 0.016
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 30 0.046
ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacte... 29 0.079
ref|NP_224195.1| putative [Helicobacter pylori J99] 27 0.39
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 26 0.67
ref|NP_223965.1| putative [Helicobacter pylori J99] 25 1.5
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 25 1.5
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 24 2.0
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 24 2.6
ref|NP_222755.1| putative [Helicobacter pylori J99] 24 2.6
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_224070.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_223513.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_222760.1| GDP-D-mannose dehydratase [Helicobacter py... 23 5.7
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 7.4
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 22 7.4
ref|NP_223268.1| putative [Helicobacter pylori J99] 22 7.4
ref|NP_223090.1| putative [Helicobacter pylori J99] 22 7.4
ref|NP_222805.1| MALONYL COA-ACYL CARRIER PROTEIN TRANSACYL... 22 7.4
ref|NP_222776.1| putative [Helicobacter pylori J99] 22 9.7
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 442
Score = 327 bits (839), Expect = 8e-92
Identities = 166/173 (95%), Positives = 168/173 (96%)
Query: 1 MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDY 60
MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDY
Sbjct: 1 MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDY 60
Query: 61 RAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIGYAEVFKFSDMVFILLKKDEHFVL 120
RAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNI YAEVFKFSDMVFILLKKDEHFVL
Sbjct: 61 RAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIWYAEVFKFSDMVFILLKKDEHFVL 120
Query: 121 YKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKPSLKGIKA 173
YKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVK +G K+
Sbjct: 121 YKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKRFAQGDKS 173
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 31.2 bits (69), Expect = 0.016
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 1 MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDY 60
+ ++FF +V + + L GA A Y + + + Q+ + ++ IN+ NY
Sbjct: 267 LSIALFFLMVFIILSKLIGVGAIAGYIQAFSSTQQQLQDLSFYGKWFFAINKYFENYF-- 324
Query: 61 RAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIGYA 99
I D YKI ET I+ EK+ H + NI ++
Sbjct: 325 -CILD--YKIPKPETQIKLEEKI-----HSITFENISFS 355
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 29.6 bits (65), Expect = 0.046
Identities = 19/86 (22%), Positives = 43/86 (49%), Gaps = 4/86 (4%)
Query: 52 EILNNYSDYRAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNI--GYAEVFKFSDMVF 109
E++ Y +A+ Y +I F + ++ L + +A +++H + Y +V+ ++
Sbjct: 413 ELVALYQSAKALSAYWLEIEFDKASL--LGEFIAFNENKIHSESEIKNYIKVYLSGTIIL 470
Query: 110 ILLKKDEHFVLYKDLHSVSYRNYFLA 135
LL K+ + + +DL + N F+A
Sbjct: 471 ELLYKERYSLSKQDLQKAKFLNEFMA 496
>ref|NP_223777.1| ATP synthase F1, subunit beta [Helicobacter pylori J99]
Length = 469
Score = 28.9 bits (63), Expect = 0.079
Identities = 19/74 (25%), Positives = 38/74 (50%), Gaps = 4/74 (5%)
Query: 42 RHYQFVTTINEILNNYSDYRAIEDYLYKIGFRETTIENLEKV-LAKRRHQLHHRNIGYAE 100
+HY+ T I ++L Y D ++D + +G E + E+ + V A++ + + AE
Sbjct: 359 KHYEIATGIQQVLQKYKD---LQDIIAILGLDELSEEDKKTVERARKIEKFLSQPFFVAE 415
Query: 101 VFKFSDMVFILLKK 114
VF S ++ L++
Sbjct: 416 VFTGSPGKYVTLQE 429
>ref|NP_224195.1| putative [Helicobacter pylori J99]
Length = 197
Score = 26.6 bits (57), Expect = 0.39
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 9 VVALFMITLFSFGAFAYYFVSSQ----ISHENYQN-EMRHYQFVTTINEILN-------- 55
V+ F++ F ++F+ SQ +S EN E+ +++ ++IL+
Sbjct: 11 VLNFFVVLSFITIGLVFFFLRSQPTSVVSKENIPKIELENFKAFQINDKILDLSIEGKKA 70
Query: 56 -NYSDYRAIEDYLYKIGFRETTIENLEKVLAKRRHQLH 92
Y D+ D K + E TIE++E AKR+ L+
Sbjct: 71 LQYDDHEIFFDSKIK-RYDEDTIESVESPEAKRQQDLY 107
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 25.8 bits (55), Expect = 0.67
Identities = 8/26 (30%), Positives = 20/26 (76%)
Query: 59 DYRAIEDYLYKIGFRETTIENLEKVL 84
DY+++ED++ ++ F + T ++LE ++
Sbjct: 891 DYKSLEDFISRVDFSKLTKKSLEPLV 916
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 24.6 bits (52), Expect = 1.5
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 25/115 (21%)
Query: 35 ENYQNEMRHYQFVTTINEILNNYSDYRAIEDYLYKIGFRETT-------IENLEKVLAKR 87
ENY+N+ Q + +N + N +E+ LY+ + +E L+ +L
Sbjct: 146 ENYKNQ----QEIELLNTAIKN------LENTLYQANHSSSPDLIAIAKLEILKSLLEIE 195
Query: 88 RHQLH------HRNIGYAEVFKFSDMVFILLKKDEHFVLYKDLHSVSYRNYFLAI 136
++ L H ++G FK ++++ I K E F ++LH++S NY +AI
Sbjct: 196 KNDLEVALSSSHYSMGEL-TFKENEILSIAPKNFE-FNNEQELHNISATNYDIAI 248
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 24.6 bits (52), Expect = 1.5
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 5 IFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDYRAIE 64
++FK AL++I+ F F FV I Y N ++ T E+ + Y
Sbjct: 180 LWFKSKALWLISSLLFLFFVLAFVDLIIKRRQYTNSLK-----MTKQEVKDEYKQQEGNP 234
Query: 65 DYLYKIGFRETTIEN 79
+ KI R+ ++N
Sbjct: 235 EIKAKI--RQMMVKN 247
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 24.3 bits (51), Expect = 2.0
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 100 EVFKFSDMVFILLKKDEHFVLYKDLHSVSYRNYFLAITVGLLLILF-LFLFVLQSLLPLR 158
E+F D + L+ K+E +VL+K+ S I LL F L+ F+ +S + L
Sbjct: 414 ELFNIYDFLNKLIAKEEPWVLHKNNESEKLEALLSLIANTLLQSSFLLYAFMPKSAMKLA 473
Query: 159 E-LRSQVKPS 167
R ++ P+
Sbjct: 474 SAFRVEITPN 483
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 23.9 bits (50), Expect = 2.6
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 19 SFGAFAYYFVSSQISHENYQNEMRHYQFVTTI------NEILNNYSDYRA-IEDYLYKIG 71
S G ++VS N M + + + I +++ + S + A I ++ +G
Sbjct: 680 SVGLILRWYVSGHSPWSNAYESMLYIAWASVIAGFVLRSKLALSASSFLAGIALFVAHLG 739
Query: 72 FRETTIENLEKVLAKRRHQLH-------HRNIGYAEVFKFSDMVFILLKKDEHFVLYKDL 124
F + I L VL +H + +G V +V +L+K F L K +
Sbjct: 740 FMDPQIGPLVPVLKSYWLNIHVSVITASYGFLGLCFVLGILSLVLFILRKQGRFNLDKTI 799
Query: 125 HSVSYRNYFLAITVGLLLI 143
S+S N +++ +GL ++
Sbjct: 800 LSISAINE-MSMILGLFML 817
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 23.9 bits (50), Expect = 2.6
Identities = 17/71 (23%), Positives = 32/71 (44%), Gaps = 4/71 (5%)
Query: 6 FFKVVALFMITLFS--FGAFAYYFVSSQISHENYQNEM--RHYQFVTTINEILNNYSDYR 61
FF AL F F F Y + +E +QN + ++++ L+N+S++
Sbjct: 59 FFSASALLEALWFVGFFALFNYALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHA 118
Query: 62 AIEDYLYKIGF 72
D+++ GF
Sbjct: 119 LSLDFIFNHGF 129
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.5 bits (49), Expect = 3.3
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 28 VSSQISHENYQNE--MRHYQFVTTINEILNNYSDYRAIEDYLYKIGFRETTIENLEKVLA 85
V++ +H ++ E R Y+ + T N + DY+ I+D++ K+G + +I E+ L
Sbjct: 758 VNAVANHFGFKQEKLQRWYEKIDTANFGYST-QDYKIIKDFIDKVG--KNSINLNEQTL- 813
Query: 86 KRRHQLHH 93
+ +HH
Sbjct: 814 -NEYFIHH 820
>ref|NP_224070.1| putative [Helicobacter pylori J99]
Length = 262
Score = 23.1 bits (48), Expect = 4.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 81 EKVLAKRRHQLHHRNIGYAEVFKFSDMVFI 110
EK++ + R +++H + A V K +D VF+
Sbjct: 24 EKLVLEGRVKINHEHAKLASVVKENDKVFL 53
>ref|NP_223513.1| putative [Helicobacter pylori J99]
Length = 245
Score = 23.1 bits (48), Expect = 4.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 126 SVSYRNYFLAITVGLLLILFLFLFVLQSLL 155
S+SYR +F ++ GL+ + L++ + +L
Sbjct: 189 SISYRKFFNLLSKGLMGVFGLYVLYMGIML 218
>ref|NP_222760.1| GDP-D-mannose dehydratase [Helicobacter pylori J99]
Length = 381
Score = 22.7 bits (47), Expect = 5.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 120 LYKDLHSVSYRNYFL 134
LY+DLHS R +FL
Sbjct: 48 LYEDLHSEHKRRFFL 62
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 22.3 bits (46), Expect = 7.4
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 54 LNNYSDYRAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIGYA-EVFKFSDMVFILL 112
LNN +++ + F + + LE++ ++ + L H I A E F F + L
Sbjct: 89 LNNKTEFPKNRENPLSKAFCQMVLYFLEEIEKEKNNSLKHTIICNAHEFFLFDCKDLLSL 148
Query: 113 KKDEHFVLYKDLHSVSYRNY 132
K+D+ + Y+NY
Sbjct: 149 KEDKRIKKF-------YKNY 161
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 22.3 bits (46), Expect = 7.4
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 50 INEILNNYSDYRAIEDYLYKIGFRETTIEN------LEKVLAKRRHQLHHRNIGYAEVFK 103
I EIL + I++ L +GF+ +T E LE ++ RH + E+ +
Sbjct: 387 ITEILGLVIEAEKIQNILKNLGFKVSTKEPNSKPQILEVIVPNFRHDIKTIQDIAEEILR 446
Query: 104 FSDMVFILLKKDEHFVLYKDLHSVSYRN 131
F + ++ K LH VS +N
Sbjct: 447 FVGI---------DNLVSKPLHCVSSKN 465
>ref|NP_223268.1| putative [Helicobacter pylori J99]
Length = 205
Score = 22.3 bits (46), Expect = 7.4
Identities = 8/29 (27%), Positives = 16/29 (54%)
Query: 5 IFFKVVALFMITLFSFGAFAYYFVSSQIS 33
+FF F +++ + G +YF+ S+ S
Sbjct: 150 LFFNAAKNFGLSIEARGGIPFYFIQSRFS 178
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 22.3 bits (46), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 143 ILFLFLFVLQSLLPLRELRSQVKPSLKGI 171
+LF FL + L+P ++L PS+K +
Sbjct: 328 VLFKFLHLGVDLMPSKDLSLAFDPSVKRV 356
>ref|NP_222805.1| MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE [Helicobacter pylori
J99]
Length = 309
Score = 22.3 bits (46), Expect = 7.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 101 VFKFSDMVFILLKKDEHFVLYKDLHSVSYRNYFLAI 136
+FKF +++ LK HF + + + +Y N A+
Sbjct: 206 IFKFQELLEKSLKDKFHFEIISNATNEAYHNKSKAV 241
>ref|NP_222776.1| putative [Helicobacter pylori J99]
Length = 522
Score = 21.9 bits (45), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 21 GAFAYYFVSSQISHENYQNE 40
G F YF+S I +E +Q E
Sbjct: 123 GVFLKYFLSYPIKYEKHQAE 142
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.331 0.145 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,744
Number of Sequences: 1491
Number of extensions: 8535
Number of successful extensions: 52
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 21
length of query: 173
length of database: 494,079
effective HSP length: 72
effective length of query: 101
effective length of database: 386,727
effective search space: 39059427
effective search space used: 39059427
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)