BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644796|ref|NP_206966.1| hypothetical protein
[Helicobacter pylori 26695]
(157 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222874.1| putative [Helicobacter pylori J99] 269 2e-74
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 28 0.089
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 27 0.20
ref|NP_222774.1| putative [Helicobacter pylori J99] 26 0.44
ref|NP_223645.1| putative [Helicobacter pylori J99] 26 0.57
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 25 0.75
ref|NP_223025.1| putative [Helicobacter pylori J99] 25 0.98
ref|NP_223830.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223515.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 24 1.7
ref|NP_223761.1| putative [Helicobacter pylori J99] 24 1.7
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 24 1.7
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 2.2
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 24 2.2
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 23 2.8
ref|NP_223532.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 23 2.8
ref|NP_223872.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223759.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223568.1| putative Outer membrane protein [Helicobac... 23 3.7
ref|NP_223388.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_222810.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_222760.1| GDP-D-mannose dehydratase [Helicobacter py... 23 3.7
ref|NP_224131.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223531.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99] 23 4.9
ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylor... 23 4.9
ref|NP_223889.1| putative [Helicobacter pylori J99] 22 6.3
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 22 6.3
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 269 bits (688), Expect = 2e-74
Identities = 140/157 (89%), Positives = 146/157 (92%)
Query: 1 MAGRMELKNIISETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLEP 60
MAGRMELKNIISETLNEIEKMAKTID+ F+ AQKTPSFFKTP +LQNT + +NAN PLEP
Sbjct: 1 MAGRMELKNIISETLNEIEKMAKTIDDGFNTAQKTPSFFKTPSHLQNTPNSKNANTPLEP 60
Query: 61 KNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLERTLVLFKGMQA 120
KNAAKIETQEKITEEKEEA EIITEEI QENPTQ LI NERVFLKGLLERTLVLFKGMQA
Sbjct: 61 KNAAKIETQEKITEEKEEAKEIITEEIVQENPTQALIPNERVFLKGLLERTLVLFKGMQA 120
Query: 121 LEEKEAMKRLDLVARFLQYQLSTLEKRLESLERENTE 157
LEEKEA+KRLDLVARFLQYQLS LEKRLESLERENTE
Sbjct: 121 LEEKEALKRLDLVARFLQYQLSVLEKRLESLERENTE 157
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 28.5 bits (62), Expect = 0.089
Identities = 18/79 (22%), Positives = 39/79 (48%), Gaps = 4/79 (5%)
Query: 46 QNTLDPQNANVPLEPKNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLK 105
+NT P+ VP+ PK + ET I E++ ++ +E + + + +E + K
Sbjct: 341 KNTKKPRVVEVPIPPKTSDSDETMRVIKEKENYNGLLVDKETTIKRSYKGTLISENSYSK 400
Query: 106 GLLERTLVLFKGMQALEEK 124
+T + + +++LEE+
Sbjct: 401 ----KTPINLEDLRSLEEE 415
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 27.3 bits (59), Expect = 0.20
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 13/147 (8%)
Query: 15 LNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNTL------DPQNANVPLEPKNAAKIET 68
L + +K+ I+ F+ + S YL N L +N + P+ I+
Sbjct: 125 LTQFKKILPQIEQRFETNKNAYSVQALQVYLSNVLYNLVNNSNNGSNNGVVPEYVGIIKV 184
Query: 69 QEKITEEKEEAPEIITEEIAQENP-TQVLISNERVFLKGLLERTLVLFKGMQALEEKEAM 127
+ + E + TE +A N T+V + + VFLKGLL + + LF + + +
Sbjct: 185 ---LYGSQNEFSLLATESVALLNALTRVNLDSNSVFLKGLLAQ-MQLFNDTSSAKLGQIA 240
Query: 128 KRLDL--VARFLQYQLSTLEKRLESLE 152
+ L LQ + T+ R+ + +
Sbjct: 241 ENLKNGGAGAMLQKDVKTISDRIATYQ 267
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 26.2 bits (56), Expect = 0.44
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 65 KIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFL-KGLLERTLVLFKGMQALEE 123
K++ E + E + + + N Q+ + E++ + K LER + K +LE
Sbjct: 217 KLKQLESAQKSLENTNNQLRQALENSN-VQLAQAKEKIAIEKSELEREIARLK---SLEG 272
Query: 124 KEAMKRLDLVARFLQYQLSTLEKRLESLEREN 155
EA LDL R L L+++ LE EN
Sbjct: 273 MEAKSDLDLHNRRLASANEDLKRQNRKLEEEN 304
Score = 25.8 bits (55), Expect = 0.57
Identities = 34/115 (29%), Positives = 50/115 (42%), Gaps = 12/115 (10%)
Query: 48 TLDPQNANVPLEPKNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGL 107
T + ++AN L KN T++K+T+E TE A+ V IS L
Sbjct: 43 TSELKDANDQLRQKNDKLFITKDKLTKEN-------TELFAENESLSVKISGLEHSNDQL 95
Query: 108 LERTLVLFKGMQALE-EKEAMKRLD---LVAR-FLQYQLSTLEKRLESLERENTE 157
+ L K L+ EK+ + + + L AR L + L E L+RENTE
Sbjct: 96 WQNNNKLTKEKAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTE 150
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.8 bits (55), Expect = 0.57
Identities = 22/91 (24%), Positives = 42/91 (45%), Gaps = 5/91 (5%)
Query: 12 SETLNEIEKM-AKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLEPKNAAKIETQE 70
+ETLN + ++ ID N + + + N+++ NA + + A + TQE
Sbjct: 317 NETLNAFNVLDSQAIDLNAISNSVGLNPTQESKITDNSVELNNA----QEQTAQEQTTQE 372
Query: 71 KITEEKEEAPEIITEEIAQENPTQVLISNER 101
+ T+E+ + E+ QE TQ + E+
Sbjct: 373 QTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQ 403
Score = 25.0 bits (53), Expect = 0.98
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 18/81 (22%)
Query: 68 TQEKITEEKEEAPEIITEEIAQEN-PTQV-----------------LISNERVFLKGLLE 109
TQE+ T+E+ + E+ QEN PT + +E V +KG
Sbjct: 385 TQEQTTQEQTTQEQTTQEQDTQENAPTTIKQETPITPAIPLNPKIDFKPSEEVLIKGAKT 444
Query: 110 RTLVLFKGMQALEEKEAMKRL 130
R K ++ L+E +A + +
Sbjct: 445 RYKANIKAIELLKELQAKQEI 465
Score = 23.1 bits (48), Expect = 3.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 68 TQEKITEEKEEAPEIITEEIAQENPTQ 94
TQE+ T+E+ + E+ QE TQ
Sbjct: 380 TQEQTTQEQTTQEQTTQEQTTQEQDTQ 406
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 25.4 bits (54), Expect = 0.75
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 7 LKNIISETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLE 59
+ + +S + + +A + NN ++ + T LQNTL+ +N N+ +E
Sbjct: 98 VSSALSSAVGMWQVIASNLANNSLSSSEYEKLKATSQLLQNTLENKNNNLKIE 150
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 25.0 bits (53), Expect = 0.98
Identities = 29/102 (28%), Positives = 51/102 (49%), Gaps = 19/102 (18%)
Query: 57 PLEPKNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLERTLVLFK 116
P + + + ++ETQE++ KEE E E I +E TQ + ++ E+T +
Sbjct: 223 PKDEEVSKELETQEELETPKEETQE--QEPIKEE--TQEIKEEKQ-------EKT----Q 267
Query: 117 GMQALEEKEAMKRLDLVARFLQYQLSTLEKRLESLE-RENTE 157
+ +E EAM+ L + +Q + E + E+ E +ENTE
Sbjct: 268 DSPSAQELEAMQEL---VKEIQENSNDQENKKETQETQENTE 306
Score = 24.3 bits (51), Expect = 1.7
Identities = 29/97 (29%), Positives = 45/97 (45%), Gaps = 14/97 (14%)
Query: 11 ISETLNEI--EKMAKTIDNNFDAAQKTPSFFKTPPYLQ-NTLDPQNANVPLEPKNAAK-- 65
I E EI EK KT D+ +AQ+ + + +Q N+ D +N E + +
Sbjct: 251 IKEETQEIKEEKQEKTQDS--PSAQELEAMQELVKEIQENSNDQENKKETQETQENTETP 308
Query: 66 --IETQEKITEEKEEAPEIITEEIAQENPTQVLISNE 100
IETQE ++EE T+E+A++ Q L E
Sbjct: 309 QDIETQELEIPKEEE-----TQEVAEKTQVQGLEKEE 340
Score = 23.9 bits (50), Expect = 2.2
Identities = 23/75 (30%), Positives = 34/75 (44%), Gaps = 7/75 (9%)
Query: 51 PQNANVPLEPKNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLER 110
P N N PK E+ K +EKEE+ + + + N +L S + LK LLE
Sbjct: 431 PNNENDTETPK-----ESDIKAPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLEN 485
Query: 111 TLVLFKGMQALEEKE 125
+ K LE+K+
Sbjct: 486 KTLSIK--ITLEDKK 498
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 24.6 bits (52), Expect = 1.3
Identities = 13/68 (19%), Positives = 31/68 (45%)
Query: 40 KTPPYLQNTLDPQNANVPLEPKNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISN 99
KT Q T + +E N K+E +++ TE++++ +++ + ++
Sbjct: 151 KTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENH 210
Query: 100 ERVFLKGL 107
+ F+K L
Sbjct: 211 NQFFIKKL 218
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 24.6 bits (52), Expect = 1.3
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 5/48 (10%)
Query: 48 TLDPQNANVPLEPKNAAKIETQEKITEE-----KEEAPEIITEEIAQE 90
T + ++ N P+ +NAAK E + ++E KEE + E+ A+E
Sbjct: 466 TKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRARE 513
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 24.3 bits (51), Expect = 1.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 59 EPKNAAKIETQEKITEEKEEAPEIITEEIAQENPTQ 94
EPK K E ++ +EK ++ T++I +E Q
Sbjct: 132 EPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQ 167
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 24.3 bits (51), Expect = 1.7
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 33 QKTPSFFKTPPYLQNTLDPQNANVPLEPKNAAKIETQEKI----TEEKEEAPEIITEEIA 88
+ + S + +PP + P N+N P NA I+TQE + E+ ++ TE+
Sbjct: 925 EDSESLYTSPPITKGETLPLNSNKPDPTTNA--IKTQEPLYPLELANAEKLAKLETEKAF 982
Query: 89 QENPTQVLISNE 100
+ + L NE
Sbjct: 983 KAEAVKKLDFNE 994
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 24.3 bits (51), Expect = 1.7
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 47 NTLDPQNANVPLEPKNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKG 106
N LD + N + +TQE T E+ PE IT++ N +++ +++ ++ G
Sbjct: 176 NHLDNPTESSDNHLDNPTETKTQETKTHFDEDKPEEITDD---SNDQEIIKGSKKKYIIG 232
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 23.9 bits (50), Expect = 2.2
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 11 ISETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNAN 55
+ +T N E+ + +D Q F Y +NT+DP+N +
Sbjct: 595 LKDTHNAKERYNEVVDL-VHIGQSCLKFLSEDDYYENTIDPKNGS 638
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 23.9 bits (50), Expect = 2.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 60 PKNAAKIETQEKITEEKEEAPEIITEEIAQENP 92
P+ K E +EK EE + TE + +NP
Sbjct: 147 PEKEVKKENKEKAKEEVKANKTPTTENLTSDNP 179
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 23.5 bits (49), Expect = 2.8
Identities = 13/41 (31%), Positives = 17/41 (40%)
Query: 10 IISETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPYLQNTLD 50
++ ETL + KT D NF F K P L+ D
Sbjct: 584 VLFETLEGLGFGEKTDDENFKLTLNQNEFLKKEPELEKLKD 624
>ref|NP_223532.1| putative [Helicobacter pylori J99]
Length = 117
Score = 23.5 bits (49), Expect = 2.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 33 QKTPSFFKTPPYLQNTLDPQNANVPLEPKNAAKIETQEKI 72
+ + S + +PP + P N+N P NA I+TQE +
Sbjct: 48 EDSESLYTSPPITKGETLPLNSNKPDPTTNA--IKTQEPL 85
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 23.5 bits (49), Expect = 2.8
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 90 ENPTQVLISNERVFLKGLLERTLVLFKGM 118
+NP + NER+F++ L + FK M
Sbjct: 83 KNPAPIFALNERLFVQELYHGPSLAFKDM 111
>ref|NP_223872.1| putative [Helicobacter pylori J99]
Length = 153
Score = 23.1 bits (48), Expect = 3.7
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 55 NVPLEPK-NAAKIETQEKITEEKEEAP 80
N PK + A IE EKI EK++AP
Sbjct: 18 NAKSAPKEDLAPIEGAEKIEREKKDAP 44
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.1 bits (48), Expect = 3.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 62 NAAKIETQEKITEEKEEAPEIITE 85
NA K E IT+EK +A ITE
Sbjct: 228 NANKQEAINNITQEKTQATSEITE 251
>ref|NP_223568.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 514
Score = 23.1 bits (48), Expect = 3.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 38 FFKTPPYLQNTLDPQNAN 55
FF T PYL+ +P N+N
Sbjct: 218 FFATVPYLKKGGNPSNSN 235
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 23.1 bits (48), Expect = 3.7
Identities = 16/69 (23%), Positives = 27/69 (38%)
Query: 62 NAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLERTLVLFKGMQAL 121
N +E +K+ E + E + EN T L+E + FK +
Sbjct: 37 NQEALEVFQKLERESLKELESLKNNEEWENFTIAFYGETGAGKSTLIECLRMFFKEQSKV 96
Query: 122 EEKEAMKRL 130
+++E KRL
Sbjct: 97 DQQERFKRL 105
>ref|NP_222810.1| putative [Helicobacter pylori J99]
Length = 237
Score = 23.1 bits (48), Expect = 3.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 104 LKGLLERTLVLFKGMQALEEK 124
LKGL E LVL+ Q LE K
Sbjct: 54 LKGLNESPLVLYVAAQVLEGK 74
>ref|NP_222760.1| GDP-D-mannose dehydratase [Helicobacter pylori J99]
Length = 381
Score = 23.1 bits (48), Expect = 3.7
Identities = 17/43 (39%), Positives = 23/43 (52%), Gaps = 3/43 (6%)
Query: 117 GMQALEEKEAMKRLDLVARFLQYQLSTLE---KRLESLERENT 156
G+ L EAM+ L L + YQ ST E + LE+ + ENT
Sbjct: 109 GIGTLRILEAMRILGLEKKTRFYQASTSELYGEVLETPQNENT 151
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 22.7 bits (47), Expect = 4.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 47 NTLDPQNANVPLEPKNAAKIETQEKITEEKEEAPEIITEE 86
NT QN + K+ KIE +E+ + +E ++I E
Sbjct: 35 NTKTTQNNQINQPNKDIKKIEHEEEDEKVTKEVNDLINNE 74
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 22.7 bits (47), Expect = 4.9
Identities = 16/97 (16%), Positives = 42/97 (42%)
Query: 58 LEPKNAAKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLKGLLERTLVLFKG 117
LEP K + +K +KE + I ++ ++ +S L+ + + K
Sbjct: 21 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKK 80
Query: 118 MQALEEKEAMKRLDLVARFLQYQLSTLEKRLESLERE 154
M ++ + ++ L++ + + + + +E+L+ E
Sbjct: 81 MSEIKSERELRSLNIEEDIAKERSNQANREIENLQNE 117
>ref|NP_223531.1| putative [Helicobacter pylori J99]
Length = 155
Score = 22.7 bits (47), Expect = 4.9
Identities = 23/102 (22%), Positives = 47/102 (45%), Gaps = 7/102 (6%)
Query: 6 ELKNIISETLNEIEK--MAKTIDNNFDAAQKTPSFFKTPPYLQNTLDPQNANVPLEPKNA 63
E+ NI+ + + E ++ A I NN ++ S FK L+N + ++ K
Sbjct: 36 EIPNILQKGVKEEDRPGYAAIILNN---SKVILSKFKGDNELKNHY--MITSFEVDDKVL 90
Query: 64 AKIETQEKITEEKEEAPEIITEEIAQENPTQVLISNERVFLK 105
++ET ++ + + + +ENPT ++++ V LK
Sbjct: 91 RELETIATLSNDYRDGINYSISNLNRENPTPKPLTSQEVLLK 132
>ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 375
Score = 22.7 bits (47), Expect = 4.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 39 FKTPPYLQNTLDPQNANVPLEPKNAAKIETQE 70
F+TP ++Q+ L ++ + PK+A + +E
Sbjct: 34 FETPKFIQDALKSHTHSLNIYPKSAFEESLRE 65
>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 576
Score = 22.7 bits (47), Expect = 4.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 12 SETLNEIEKMAKTIDNNFDAAQKTPSFFKTPPY 44
+E L +AK N +A FFKT PY
Sbjct: 242 TEPLMSPSALAKFPTPNTTSAPSVAEFFKTEPY 274
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 22.3 bits (46), Expect = 6.3
Identities = 22/74 (29%), Positives = 32/74 (42%), Gaps = 13/74 (17%)
Query: 30 DAAQKTPSFFKTPPYLQN-TLDPQ---NANVPLEPKNAAK---------IETQEKITEEK 76
D+A +P+ K+ QN T P+ NA +N K + QE E K
Sbjct: 40 DSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIK 99
Query: 77 EEAPEIITEEIAQE 90
+E + I +EI QE
Sbjct: 100 QEIKQEIKQEIKQE 113
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 22.3 bits (46), Expect = 6.3
Identities = 13/29 (44%), Positives = 15/29 (50%)
Query: 124 KEAMKRLDLVARFLQYQLSTLEKRLESLE 152
K + L VAR +Y L LEKR LE
Sbjct: 568 KNDLMNLLKVARHYRYTLLELEKRYNLLE 596
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.310 0.128 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,721
Number of Sequences: 1491
Number of extensions: 7539
Number of successful extensions: 48
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 36
length of query: 157
length of database: 494,079
effective HSP length: 71
effective length of query: 86
effective length of database: 388,218
effective search space: 33386748
effective search space used: 33386748
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)