BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644797|ref|NP_206967.1| hypothetical protein
[Helicobacter pylori 26695]
(87 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222875.1| putative [Helicobacter pylori J99] 163 5e-43
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 27 0.074
ref|NP_224023.1| putative [Helicobacter pylori J99] 25 0.22
ref|NP_222780.1| putative [Helicobacter pylori J99] 25 0.37
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 24 0.63
ref|NP_224139.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 23 1.1
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 23 1.4
ref|NP_223811.1| putative Outer membrane protein [Helicobac... 23 1.4
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 23 1.4
ref|NP_223965.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 22 1.8
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 22 1.8
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 22 3.1
ref|NP_223962.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_223055.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 20 6.9
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 20 6.9
ref|NP_224161.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 20 9.1
ref|NP_224001.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 20 9.1
ref|NP_223402.1| putative [Helicobacter pylori J99] 20 9.1
>ref|NP_222875.1| putative [Helicobacter pylori J99]
Length = 87
Score = 163 bits (413), Expect = 5e-43
Identities = 79/87 (90%), Positives = 84/87 (95%)
Query: 1 MPLETITLANIYEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQKNGAPFKHDAL 60
MPLETITLA+IYEEQGFFEEALQIY NILKKTP++ EALKQMKRLEKIQKN APFKHDAL
Sbjct: 1 MPLETITLAHIYEEQGFFEEALQIYTNILKKTPDNTEALKQMKRLEKIQKNCAPFKHDAL 60
Query: 61 LERHYLNFIKGDRLSVENLEKWLVEWN 87
L++HYLNFIKGDRLSVENLEKWLVEWN
Sbjct: 61 LKQHYLNFIKGDRLSVENLEKWLVEWN 87
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 26.9 bits (58), Expect = 0.074
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 13 EEQGFFEEALQIYINILKKTPNHAE 37
EE+GFF ++ N+LK PN+ +
Sbjct: 93 EEKGFFIPPSALFCNVLKNAPNNED 117
>ref|NP_224023.1| putative [Helicobacter pylori J99]
Length = 243
Score = 25.4 bits (54), Expect = 0.22
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 42 MKRLEKIQKNGA---PFKHDALLERHYLNFIKGDRLSVENL 79
+K++EK++ N A +H+ L + FI GD LSV++L
Sbjct: 118 IKQVEKLELNYALIDNIQHNTLDDTLDFTFIVGDSLSVQSL 158
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 24.6 bits (52), Expect = 0.37
Identities = 16/52 (30%), Positives = 30/52 (56%), Gaps = 6/52 (11%)
Query: 18 FEEALQIYINILKKTPNHAEALKQM-----KRLEKIQKNGAPFKHDALLERH 64
F+EAL+ + +K++PN + A+ + LE+ +N + K D +LER+
Sbjct: 313 FKEALEGFTEKIKESPNDSNAINEAFDNLETELERATENLSQ-KIDPVLERN 363
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 23.9 bits (50), Expect = 0.63
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 37 EALKQMKRLEKIQKNGAPFKHDALLERHYLNFIKGDRLSVENLE 80
E + +K+L ++ K + + ++ + YL+ ++G + + E LE
Sbjct: 26 EVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEGIKENKELLE 69
>ref|NP_224139.1| putative [Helicobacter pylori J99]
Length = 208
Score = 23.1 bits (48), Expect = 1.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 37 EALKQMKRLEKIQKNGAPFKHDALLE 62
+ALK+M+ L K + P++H L E
Sbjct: 178 KALKEMQDLAKALFDALPYEHQYLFE 203
Score = 23.1 bits (48), Expect = 1.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 43 KRLEKIQKNGAPFKHDALLERHYLNF-IKG 71
K + I + G F+H + LE Y NF IKG
Sbjct: 34 KDRDLIHRVGNIFRHSSTLEHLYYNFEIKG 63
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 23.1 bits (48), Expect = 1.1
Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 2/36 (5%)
Query: 10 NIYEEQGFFE--EALQIYINILKKTPNHAEALKQMK 43
NI EEQGF E + Q Y+ + K E L + K
Sbjct: 57 NILEEQGFIEVIKGKQRYLYVYLKDYRELECLVKSK 92
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 22.7 bits (47), Expect = 1.4
Identities = 17/63 (26%), Positives = 23/63 (35%), Gaps = 15/63 (23%)
Query: 10 NIYEEQGFFEEALQIYINILKKTPNHA------EALKQMKRLEKIQK---------NGAP 54
N E +GF +E L + K P H+ E+ + E QK G
Sbjct: 482 NYEEREGFVKELLSLVKEHFKTNPTHSLLDFLNESALDVHNTENAQKVSCMSVHMSKGLE 541
Query: 55 FKH 57
FKH
Sbjct: 542 FKH 544
>ref|NP_223811.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 22.7 bits (47), Expect = 1.4
Identities = 14/59 (23%), Positives = 26/59 (43%), Gaps = 6/59 (10%)
Query: 12 YEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQKNGAPFKHDALLERHYLNFIK 70
Y G+++ + +Y NIL+ + +K K + + DA LE Y N+ +
Sbjct: 103 YNLFGYYDGFMGVYTNILQTDSLETQNMKHNKNVRNYVFS------DAYLEYAYKNYFE 155
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 12 YEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQK 50
++ Q EE L NILK+ N + L+ +++ I+K
Sbjct: 655 FDHQNLSEEELLGLKNILKEDFNASVELEDLEKASPIEK 693
Score = 21.6 bits (44), Expect = 3.1
Identities = 14/43 (32%), Positives = 19/43 (43%)
Query: 36 AEALKQMKRLEKIQKNGAPFKHDALLERHYLNFIKGDRLSVEN 78
AE L + L KI+ D L+ +YL FI D + N
Sbjct: 278 AENLFGVDNLYKIENAALSHHLDQALKANYLFFIDKDYIVANN 320
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 22.3 bits (46), Expect = 1.8
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 38 ALKQMKRLEKIQKN 51
ALK +K+LE +QKN
Sbjct: 333 ALKLLKKLETLQKN 346
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 22.3 bits (46), Expect = 1.8
Identities = 11/29 (37%), Positives = 16/29 (54%)
Query: 35 HAEALKQMKRLEKIQKNGAPFKHDALLER 63
H + ++RLE K A K +ALLE+
Sbjct: 309 HCGEFENLERLEARDKVVAALKENALLEK 337
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/42 (23%), Positives = 22/42 (51%)
Query: 10 NIYEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQKN 51
++YE + +E + + + ++ EALK+++ L KN
Sbjct: 489 DVYEIRERMKEVMDEKVGVFREGKKLEEALKELQELYARSKN 530
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 21.6 bits (44), Expect = 3.1
Identities = 17/75 (22%), Positives = 33/75 (43%), Gaps = 7/75 (9%)
Query: 12 YEEQGFFEEALQIYINILKKTPNHAEALKQMKRLEKIQK---NGAPFKHDALLERHYLNF 68
Y+E G+ +EAL ++ L + E + LE N +P + H LN+
Sbjct: 251 YQEMGYLKEALVNFLARLGWSYQDKEVFSMQELLEWFNPKDLNSSP----SCFSWHKLNW 306
Query: 69 IKGDRLSVENLEKWL 83
+ L +++++ L
Sbjct: 307 LNAHYLKNQSVQELL 321
>ref|NP_223962.1| putative [Helicobacter pylori J99]
Length = 64
Score = 21.2 bits (43), Expect = 4.1
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 56 KHDALLER-HYLNFIKG--DRLSVENLEKWLVEW 86
KH L R H+L DR SV+N EK L E+
Sbjct: 16 KHAKLTGRVHHLTIPSSPSDRKSVKNFEKELTEF 49
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 13 EEQGFFEEALQIYINILKKTPNHAEALK 40
EE GF+++ +Q ILK+ H +++
Sbjct: 145 EELGFYDKIMQKKPTILKEFFEHFSSIE 172
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 20.4 bits (41), Expect = 6.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 45 LEKIQKNGAPFKHDALLE 62
LEK+Q + PFK L E
Sbjct: 249 LEKLQADNTPFKGVLLAE 266
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 20.4 bits (41), Expect = 6.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 40 KQMKRLEKIQKNGAPFKHDALLERHYLN 67
K+ L+ I+ +G+ FK L++ Y N
Sbjct: 242 KEFFYLQGIRPDGSSFKEKFALDKAYQN 269
>ref|NP_224161.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 213
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 8 LANIYEEQGFFEEALQIYINILKK 31
L N EQ + L+ YI +L+K
Sbjct: 170 LENNLWEQAIDDSTLRTYIKVLRK 193
>ref|NP_224001.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 213
Score = 20.0 bits (40), Expect = 9.1
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 8 LANIYEEQGFFEEALQIYINILKK 31
L N EQ + L+ YI +L+K
Sbjct: 170 LENNLWEQAIDDSTLRTYIKVLRK 193
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 20.0 bits (40), Expect = 9.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 32 TPNHAEALKQMKRLE 46
TP+ A+ALKQ++ L+
Sbjct: 152 TPSIAQALKQIELLD 166
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,852
Number of Sequences: 1491
Number of extensions: 4288
Number of successful extensions: 23
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 87
length of database: 494,079
effective HSP length: 63
effective length of query: 24
effective length of database: 400,146
effective search space: 9603504
effective search space used: 9603504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)