BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644806|ref|NP_206976.1| translation elongation
factor EF-P (efp) [Helicobacter pylori 26695]
(187 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222884.1| ELONGATION FACTOR P (EF-P) [Helicobacter p... 370 e-104
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 25 1.7
ref|NP_222885.1| putative restriction enzyme [Helicobacter ... 25 1.7
ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 23 3.7
ref|NP_223290.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 22 8.3
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 22 8.3
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 22 8.3
ref|NP_222936.1| 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSF... 22 8.3
>ref|NP_222884.1| ELONGATION FACTOR P (EF-P) [Helicobacter pylori J99]
Length = 187
Score = 370 bits (951), Expect = e-104
Identities = 186/187 (99%), Positives = 186/187 (99%)
Query: 1 MAIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKTFHAGDK 60
MAIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKTFHAGDK
Sbjct: 1 MAIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKTFHAGDK 60
Query: 61 CEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEASKWMLDGMQVQVLLHNDK 120
CEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEASKWMLDGMQVQVLLHNDK
Sbjct: 61 CEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEASKWMLDGMQVQVLLHNDK 120
Query: 121 AISVDVPQVVALKIVETAPNFKGDTSSASKKPATLETGAVVQVPFHVLEGEIIKVNTETE 180
AISVDVPQVVALKIVETAPNFKGDTSSASKKPATLETGAVVQVPFHVLEGE IKVNTETE
Sbjct: 121 AISVDVPQVVALKIVETAPNFKGDTSSASKKPATLETGAVVQVPFHVLEGETIKVNTETE 180
Query: 181 EYLEKVK 187
EYLEKVK
Sbjct: 181 EYLEKVK 187
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 24.6 bits (52), Expect = 1.7
Identities = 15/52 (28%), Positives = 23/52 (43%), Gaps = 11/52 (21%)
Query: 109 GMQVQVLLHNDKAISVDVPQVVALKIVETAPN--FKGDTSSASKKPATLETG 158
G++ + H+ + +P T PN FKG T+ +KK LE G
Sbjct: 314 GIRTNIFEHHGIEFGIKIP---------TLPNYFFKGSTTIRAKKQGPLENG 356
>ref|NP_222885.1| putative restriction enzyme [Helicobacter pylori J99]
Length = 448
Score = 24.6 bits (52), Expect = 1.7
Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 78 GDTYQFMDIESYEQIALNDSQVGEASKWMLDGMQVQVLLHNDKAISVDVP 127
G+ +Q +D +++ D +S++ ++ + ++HNDK S+ +P
Sbjct: 247 GEIFQLLDRLKHDK----DGFKKGSSEYAINNTDIANIVHNDKNASIRIP 292
>ref|NP_223361.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 381
Score = 23.5 bits (49), Expect = 3.7
Identities = 10/53 (18%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Query: 49 KVIEKTFHAGDKCEEPNLVEKTMQYLYHDGDTYQFMDIESYEQIALNDSQVGE 101
K + + +H G K N ++ ++Y +H G+ + + + I ++++ E
Sbjct: 323 KEVCEAYHLGPKSFSKNAAKRLLEYSWH-GNVRELLGVVERAAILSEETEIQE 374
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 23.5 bits (49), Expect = 3.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 8 LKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKTFH 56
L +G +L + R+ + +K G FV + F +GK+ + FH
Sbjct: 310 LHRGDPQQLANLRLRVKDLVKIKFGVAKPFVLRCARDFEEGKLDYENFH 358
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 22.3 bits (46), Expect = 8.3
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 86 IESYEQIALNDSQVGEASKWMLDGMQVQVLLHNDKAISVDVPQVVALKIVETAP 139
+ +Y Q + ++ G S M+ L + + + + D VV+L ++ET P
Sbjct: 110 VTAYNQESAEEAGYGNNSLIMIQNFLPYNLNNIELSYTDDQGNVVSLGVIETIP 163
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 22.3 bits (46), Expect = 8.3
Identities = 9/35 (25%), Positives = 18/35 (50%)
Query: 20 PYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKT 54
PY + H+K G +++ S + G V+E++
Sbjct: 185 PYLVDTQSHLKHGYECLLLKSGFSSAIKGVVLERS 219
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 22.3 bits (46), Expect = 8.3
Identities = 26/119 (21%), Positives = 49/119 (40%), Gaps = 13/119 (10%)
Query: 69 KTMQYLYHDGDTYQFMDIESYEQIALNDSQVGEASKWMLDGMQVQVLL----------HN 118
KT + L + + + + +E + Q G+ K+++DG++ Q+ +
Sbjct: 16 KTQKELKNVIEQAKDIGLELKTNFKMTPEQAGKLYKYIVDGIKEQIQANQPTKNPKQDNK 75
Query: 119 DKAISVDVPQVVALKIVETAPNFKGDTSSASKKPATLETGAVVQVPFHVLEGEIIKVNT 177
D + P+ +A K +T K +T + K T E P + + EI VNT
Sbjct: 76 DDLNTAATPKPLAKKASKTPK--KEETKAQPKPKKTKEKKKEAPAPI-IKKKEIEIVNT 131
>ref|NP_222936.1| 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE [Helicobacter
pylori J99]
Length = 243
Score = 22.3 bits (46), Expect = 8.3
Identities = 16/63 (25%), Positives = 23/63 (36%)
Query: 124 VDVPQVVALKIVETAPNFKGDTSSASKKPATLETGAVVQVPFHVLEGEIIKVNTETEEYL 183
++ Q++ LK E N +GD KK A PF ++I L
Sbjct: 75 LEAAQILGLKNDERVLNLQGDEPFLEKKVILALLEATQNAPFMATCAKVIDEEQAKSPNL 134
Query: 184 EKV 186
KV
Sbjct: 135 VKV 137
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,595
Number of Sequences: 1491
Number of extensions: 7532
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 9
length of query: 187
length of database: 494,079
effective HSP length: 73
effective length of query: 114
effective length of database: 385,236
effective search space: 43916904
effective search space used: 43916904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)