BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644810|ref|NP_206980.1| hypothetical protein
[Helicobacter pylori 26695]
(224 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222890.1| putative [Helicobacter pylori J99] 395 e-112
ref|NP_223986.1| putative [Helicobacter pylori J99] 36 7e-04
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 32 0.014
ref|NP_223520.1| putative [Helicobacter pylori J99] 32 0.014
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 31 0.031
ref|NP_223322.1| putative [Helicobacter pylori J99] 30 0.040
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 29 0.089
ref|NP_223128.1| putative Short chain dehydrogenase [Helico... 29 0.089
ref|NP_223965.1| putative [Helicobacter pylori J99] 29 0.12
ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERA... 29 0.12
ref|NP_223773.1| putative [Helicobacter pylori J99] 28 0.15
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 28 0.20
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 28 0.20
ref|NP_223387.1| putative [Helicobacter pylori J99] 28 0.20
ref|NP_223761.1| putative [Helicobacter pylori J99] 28 0.26
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 28 0.26
ref|NP_223731.1| putative [Helicobacter pylori J99] 28 0.26
ref|NP_223654.1| putative [Helicobacter pylori J99] 28 0.26
ref|NP_223198.1| cag island protein [Helicobacter pylori J99] 28 0.26
ref|NP_222839.1| putative [Helicobacter pylori J99] 28 0.26
ref|NP_223656.1| putative [Helicobacter pylori J99] 27 0.34
ref|NP_223025.1| putative [Helicobacter pylori J99] 27 0.58
ref|NP_222761.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 27 0.58
ref|NP_223908.1| NADH oxidoreductase I [Helicobacter pylori... 26 0.76
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 26 0.76
ref|NP_223806.1| putative [Helicobacter pylori J99] 26 0.76
ref|NP_223787.1| putative [Helicobacter pylori J99] 26 0.76
ref|NP_223527.1| catalase [Helicobacter pylori J99] 26 0.99
ref|NP_222912.1| putative [Helicobacter pylori J99] 26 0.99
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 26 0.99
ref|NP_222742.1| putative [Helicobacter pylori J99] 26 0.99
ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter p... 25 1.3
ref|NP_223653.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 25 1.3
ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 25 1.3
ref|NP_223204.1| cag island protein [Helicobacter pylori J99] 25 1.3
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 25 1.3
ref|NP_223790.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99] 25 1.7
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 25 2.2
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 24 2.9
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 24 2.9
ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter p... 24 2.9
ref|NP_222783.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_223666.1| putative [Helicobacter pylori J99] 24 3.8
ref|NP_223255.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 24 3.8
ref|NP_224212.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 23 4.9
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 23 4.9
ref|NP_223712.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_223202.1| cag island protein [Helicobacter pylori J99] 23 6.4
ref|NP_223167.1| putative transporter [Helicobacter pylori ... 23 6.4
ref|NP_223068.1| putative [Helicobacter pylori J99] 23 6.4
ref|NP_222873.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 23 6.4
ref|NP_223191.1| cag island protein, DNA transfer protein [... 23 8.4
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 395 bits (1015), Expect = e-112
Identities = 204/227 (89%), Positives = 213/227 (92%), Gaps = 3/227 (1%)
Query: 1 MVVVAFGIRGFYHGFVSEVAGTLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIG 60
+VVVAFGIRGFYHGFVSE+A TLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIG
Sbjct: 10 VVVVAFGIRGFYHGFVSEIAATLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIG 69
Query: 61 FLLVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMEV 120
FLLVLASIWVFFLA GVLLGK+LVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKM++
Sbjct: 70 FLLVLASIWVFFLALGVLLGKMLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMDL 129
Query: 121 MKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKE 180
MKDANAYLQEKSA F TMKSVASKIMRLDGVKHVE+NLKDNLEEMSDEVKNK S + KE
Sbjct: 130 MKDANAYLQEKSAIFPTMKSVASKIMRLDGVKHVEKNLKDNLEEMSDEVKNKGSIDNAKE 189
Query: 181 SFNKAMDKGVESLKEKAKDLPKNMLDP---KANQTPPNPTPSNKEPL 224
SFNKA DKGVE+LKEKAKDLPKNML+P K NQTPP PTPSNKEPL
Sbjct: 190 SFNKATDKGVEALKEKAKDLPKNMLEPKHNKPNQTPPIPTPSNKEPL 236
>ref|NP_223986.1| putative [Helicobacter pylori J99]
Length = 387
Score = 36.2 bits (82), Expect = 7e-04
Identities = 23/64 (35%), Positives = 36/64 (55%), Gaps = 3/64 (4%)
Query: 63 LVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMEVMK 122
+ L ++ VFFLA + G+ L+F GLGI+ LGF+ L F S +L A K+ ++
Sbjct: 287 VALLALCVFFLALFFIFGRKLIFLGLGIL--CLGFVLYNL-LFTQKSALLLAHKKIRILP 343
Query: 123 DANA 126
N+
Sbjct: 344 TQNS 347
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 32.0 bits (71), Expect = 0.014
Identities = 35/149 (23%), Positives = 63/149 (41%), Gaps = 15/149 (10%)
Query: 8 IRGFYHGFVSEVAGTLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIGFLLVLAS 67
I GF+ G +S L + L RY + YD+ L+G+LL+L
Sbjct: 151 ISGFHLGILSASVYFLFSLFYTPLQKRYFP-----YRNAFYDIGVLVWVFLLGYLLLLDF 205
Query: 68 IWVFFLAFGV-LLGKVLVFSGLGIIDKALGFIFSCL------KTFLVLSFILYALSKMEV 120
+ FF AF + LLG + F G+ I+ L + C+ K + F+L +
Sbjct: 206 LPSFFRAFLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYI 265
Query: 121 ---MKDANAYLQEKSAFFSTMKSVASKIM 146
+K + ++ S F + +++A ++
Sbjct: 266 FLFLKHTQIFFKDSSFFKRSFQAIALSVL 294
Score = 24.3 bits (51), Expect = 2.9
Identities = 29/123 (23%), Positives = 48/123 (38%), Gaps = 24/123 (19%)
Query: 11 FYHGFVSEVAGTLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIGFLLVLASIWV 70
F+ F+ + G L GV + S + + + L + +GFLL + +W
Sbjct: 209 FFRAFLMGLLGFLACFFGVRILSFKLLVLACCIAIALLP----KLLFSVGFLLSVCGVWY 264
Query: 71 FFL-----------------AFGVLLGKVLVFSGLGIIDKALGFIFSCLKTF---LVLSF 110
FL +F + VLVF + I+ A +FS + F L L F
Sbjct: 265 IFLFLKHTQIFFKDSSFFKRSFQAIALSVLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIF 324
Query: 111 ILY 113
I++
Sbjct: 325 IVF 327
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 32.0 bits (71), Expect = 0.014
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 123 DANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQN-LKDNLEEMSDEVKNKESFNKNKES 181
+ NAY QE +K + ++ ++ + +++ LK +E+ + KE+F NKE+
Sbjct: 4 ELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSVLKGLKQEICQKKLEKENFRSNKET 63
Query: 182 FNKAMD----KGVESLKEKAKDLPKNMLDP 207
N D K +E ++ AKD M P
Sbjct: 64 QNTEEDVIFPKALEEVEVYAKDNQVIMAKP 93
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 30.8 bits (68), Expect = 0.031
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 104 TFLVLSFILYALSKMEVMKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLE 163
T L SF+LYA MK A+A+ ++ + R K ++ + + E
Sbjct: 453 TLLQSSFLLYAFMPKSAMKLASAF---------RVEITPNNYERFFKAKKLQDMVLQDTE 503
Query: 164 EMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDP 207
+ +++ E K ++ + ++KG E+L EKA+ K P
Sbjct: 504 PLFSKIEKIEKIEKIEKI--EKIEKGEEALAEKAEKKEKEKAPP 545
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 30.4 bits (67), Expect = 0.040
Identities = 28/85 (32%), Positives = 41/85 (47%), Gaps = 12/85 (14%)
Query: 143 SKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPK 202
SK+ L+G K E +L + + E+K+KE KNKE NK + E + KAK P+
Sbjct: 24 SKVEALEGRKQ-ESSLDKKIRQ---ELKSKEL--KNKELKNKDLKNKEEKKETKAKRKPR 77
Query: 203 ------NMLDPKANQTPPNPTPSNK 221
+ +P TPP S+K
Sbjct: 78 AEVHHGDAKNPTPKITPPKIKGSSK 102
Score = 28.5 bits (62), Expect = 0.15
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 164 EMSDEVKNKESFNKNKESFNKAMD-KGVESLKEKAKDLPKNMLDPKANQTPPNPTPSNKE 222
+ S E K +E +NK+KE F+ + + V +DL + M DP N P + +N++
Sbjct: 269 DTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADP--NLEVPGVSKANEK 326
Score = 22.7 bits (47), Expect = 8.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 172 KESFNKNKESFNKAMDKGVESLKEKAKD 199
KE KN+ SF++A + L E++KD
Sbjct: 365 KEKRGKNEVSFSQAKQFIAQKLVEESKD 392
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 29.3 bits (64), Expect = 0.089
Identities = 15/49 (30%), Positives = 25/49 (50%)
Query: 155 EQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKN 203
E L+ L+E D +KN ++ + E + +E LK++A D KN
Sbjct: 430 ELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKN 478
>ref|NP_223128.1| putative Short chain dehydrogenase [Helicobacter pylori J99]
Length = 262
Score = 29.3 bits (64), Expect = 0.089
Identities = 13/35 (37%), Positives = 21/35 (59%)
Query: 174 SFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPK 208
++NKN E NK ++ + KAK P N+L+P+
Sbjct: 39 TYNKNVEEANKIIEDVEQKYSIKAKAYPLNVLEPE 73
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 28.9 bits (63), Expect = 0.12
Identities = 34/110 (30%), Positives = 48/110 (42%), Gaps = 21/110 (19%)
Query: 115 LSKMEVMKDANA----YLQEKSAFFSTMKSVASKI-MRLDG--VKHVEQNLKDNLEEMSD 167
L+K ++D N Y + K + M SVA I + L G K VEQ K++L S+
Sbjct: 262 LAKKSFLEDINVTGVYYFRSKQYYNYDMFSVALSIPLPLYGKQAKLVEQKKKESLAFKSE 321
Query: 168 --EVKNK------------ESFNKNKESFNKAMDKGVESLKEKAKDLPKN 203
KNK E+ KN ES NK + + + + A DL N
Sbjct: 322 VENAKNKTRHLALKLLKKLETLQKNLESINKIIKQNEKIAQIYALDLKTN 371
>ref|NP_222817.1| 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE [Helicobacter pylori
J99]
Length = 581
Score = 28.9 bits (63), Expect = 0.12
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 174 SFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPKANQTPPNP 216
SFN+N +N M GV+ + K + +++P N P NP
Sbjct: 427 SFNENVRGYNFDMFSGVKYQVDVTKPAGQRIINPTINGKPINP 469
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 28.5 bits (62), Expect = 0.15
Identities = 28/118 (23%), Positives = 49/118 (40%), Gaps = 21/118 (17%)
Query: 91 IDKALGFIFSCLKTFLVLSFILYALSKMEVMKDANAYLQEKSAFFSTMKSVASKIMRLDG 150
+ K+ F+ S FL+ + +LY L K+A L LD
Sbjct: 1 MSKSAIFVLSGFLAFLLYALLLYGLLLERHNKEAEKIL-------------------LDL 41
Query: 151 VKHVEQNLKDNLEEMSDEVKNK--ESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLD 206
K EQ + NLE++ E KN+ E + + F + ++ E +E +D+ ++ D
Sbjct: 42 NKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLND 99
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 28.1 bits (61), Expect = 0.20
Identities = 28/117 (23%), Positives = 46/117 (38%), Gaps = 3/117 (2%)
Query: 107 VLSFILYALSKMEVMKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMS 166
++SF LYA+ + +A E A T K V + ++ + + N + +
Sbjct: 20 LISFALYAIGFGYFLLREDA--PEPLAQAGTTK-VTMSLASINTNSNTKTNAESAKPKEE 76
Query: 167 DEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPKANQTPPNPTPSNKEP 223
+ K K+ K +E + K K K K PK +PK P P +EP
Sbjct: 77 PKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEP 133
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 28.1 bits (61), Expect = 0.20
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 119 EVMKDANAYLQEKSAFFSTMKSVASKIMRLDG------------VKHVEQNLKDNLEEMS 166
E++++ ++Y+ F S + S KI +L+ + ++E L+D +S
Sbjct: 546 EIVENKSSYVD----FISNLNSKCPKIEKLERNDDEIKPSSEGQITYIENILRDLQLNLS 601
Query: 167 DEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPKANQTP 213
+E KN + N+ ++F K E K+ K + D TP
Sbjct: 602 EEFKNYKEDNRVAKAFLDRYIKEHEFFKKNNKKASSSNNDENRPATP 648
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 28.1 bits (61), Expect = 0.20
Identities = 21/81 (25%), Positives = 40/81 (48%), Gaps = 13/81 (16%)
Query: 130 EKSAF-------FSTMKSVASKIMRLDGVKHVEQ----NLKDNLEEMSDEVKNKESFNKN 178
EKSAF F+ K + +I R G ++ LK ++ ++++ + F +
Sbjct: 132 EKSAFSKINQFEFNFRKEMHERIERGIGNNECKEIFGNELKQRKTKLIEDIERR--FKEC 189
Query: 179 KESFNKAMDKGVESLKEKAKD 199
+E F ++ K +E L+E+ KD
Sbjct: 190 EEQFRGSVGKNIEQLEERVKD 210
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 27.7 bits (60), Expect = 0.26
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 119 EVMKDANAYLQEKSAFFSTMKSVASKIMR---LDGVKHVEQNLKDNLEEMSDEVKNKESF 175
++M + A L+ + ++K ++ K + LD + +Q D E + + F
Sbjct: 640 DIMDRSFANLKNYQSTSESLKDLSEKFYKTSSLDMFEKSDQRASDISEILGGAIARFARF 699
Query: 176 NKNKESFNKAM--DKGVESLKE-KAKDLPKNMLDPKANQ 211
+ ++ +A+ D + LKE K D+ K+M DPK+ +
Sbjct: 700 DDPSKALFEALKSDNIKKGLKEFKIADVTKDMFDPKSKE 738
Score = 24.6 bits (52), Expect = 2.2
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 153 HVEQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNML 205
H+ + NLE + K + K E N + + E +KEKA D L
Sbjct: 28 HLISDFSKNLELSAKNSKFTNNTLKIIEELNNGVKQASEEIKEKAFDFSNEKL 80
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 27.7 bits (60), Expect = 0.26
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 20/99 (20%)
Query: 111 ILYALSKMEVMKDA---NAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSD 167
+LYA + M+ A +Y + K F+ + ++ K V + L++ L+ D
Sbjct: 553 LLYAKKTTQSMQKAFEITSYRRAKQEEFNKIHNITPKT--------VTRALEEELKLRDD 604
Query: 168 EVKNKESFNKNK------ESFNKAMDKGVESLKEKAKDL 200
E+K ++ K+K E K +DK ++E+AK+L
Sbjct: 605 EIKIAKALKKDKMPKSEREKIIKELDK---KMRERAKNL 640
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 27.7 bits (60), Expect = 0.26
Identities = 18/73 (24%), Positives = 34/73 (45%), Gaps = 2/73 (2%)
Query: 122 KDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKES 181
K N + + + ++K + L G+ + +N ++ SD + K +K +S
Sbjct: 51 KQDNLAIGDLESRLKSLKGMDKDAKELVGIS--KSYAHNNEKDRSDFERFKSRLDKAIDS 108
Query: 182 FNKAMDKGVESLK 194
FN+ +D G SLK
Sbjct: 109 FNQNLDNGAASLK 121
Score = 24.3 bits (51), Expect = 2.9
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 147 RLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKE 195
RL +K ++++ K+ + N E + E F +DK ++S +
Sbjct: 63 RLKSLKGMDKDAKELVGISKSYAHNNEKDRSDFERFKSRLDKAIDSFNQ 111
>ref|NP_223654.1| putative [Helicobacter pylori J99]
Length = 421
Score = 27.7 bits (60), Expect = 0.26
Identities = 32/113 (28%), Positives = 50/113 (43%), Gaps = 19/113 (16%)
Query: 59 IGFLLVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKM 118
+G LL++ + + LG L+ LG+I + G +FS LK ++S LY M
Sbjct: 177 LGLLLIIVLLVTAEIFMWSALG--LIVLPLGLIPQTKGMLFSYLKK--LISLTLYKPCMM 232
Query: 119 EVMKDANAYLQEKSAFFSTMKSVASKIMRLDGVKH-VEQNLKDNLEEMSDEVK 170
V AFF+ + K+ L KH V Q N ++M++E K
Sbjct: 233 LV------------AFFN--YGIIYKVNTLIPTKHEVTQGFYGNADKMANEGK 271
>ref|NP_223198.1| cag island protein [Helicobacter pylori J99]
Length = 218
Score = 27.7 bits (60), Expect = 0.26
Identities = 29/132 (21%), Positives = 55/132 (40%), Gaps = 28/132 (21%)
Query: 8 IRGFYHGFVSEVAGT---LGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIGFLLV 64
+ + H F+ + G LG+ +G + LF+ + LR T L+ L
Sbjct: 84 MEAYAHSFLGYIGGLEHLLGLCMG---------GIFVLFAIYFVFLRTSKNTELVESLKT 134
Query: 65 LASIWVFFLAFGVLLGKVLVFS-------------GLGIIDKALGFIFSCLKTFLVLSFI 111
+ F+ AFGV G VL F G+G + + F+ + F+ + ++
Sbjct: 135 KLKLQYFYYAFGV--GAVLFFGLETIRSIYELYILGIGSTNDKVLFVLKNI-CFIGMGYL 191
Query: 112 LYALSKMEVMKD 123
+Y + K+ +K+
Sbjct: 192 IYKVIKVIGIKN 203
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 27.7 bits (60), Expect = 0.26
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 168 EVKNKESFNKNKESFNKAMDKGVESLKEKAKD-LPKNMLDPKANQ 211
E +E K K F KAMDK + SL ++ ++ K +L+ AN+
Sbjct: 56 EAMKEEERQKYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANK 100
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 27.3 bits (59), Expect = 0.34
Identities = 17/57 (29%), Positives = 31/57 (53%), Gaps = 3/57 (5%)
Query: 152 KHVEQNLKDNLEEMSDEVKNKESFNK-NKESFN--KAMDKGVESLKEKAKDLPKNML 205
K Q ++ + E +E K+K++ N NKE + + K ++ +KEKAK L + +
Sbjct: 73 KEFPQEYREKIFECVEEEKHKQALNLINKEDTEDKEELAKKIKEIKEKAKVLRQKFM 129
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 26.6 bits (57), Expect = 0.58
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 155 EQNLKDNLEEMSDEV--KNKESFNKNKESFNKAMDKGVESLKEKAKD--LPKNMLDPKAN 210
E+ K+ ++EM +EV K K+ +N + K D + E KD + K + +
Sbjct: 179 EEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEEL 238
Query: 211 QTPPNPTPSNKEPL 224
+TP T +EP+
Sbjct: 239 ETPKEET-QEQEPI 251
>ref|NP_222761.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 310
Score = 26.6 bits (57), Expect = 0.58
Identities = 24/83 (28%), Positives = 37/83 (43%), Gaps = 16/83 (19%)
Query: 72 FLAFGVLLGKVLVFSGLGI-IDKALGFIFSC---------LKTFLVLSFIL------YAL 115
++ +L+G L S L + + KA+ SC LK +L+ L YAL
Sbjct: 79 YMVENLLMGLYLFSSALDLGVKKAINLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYAL 138
Query: 116 SKMEVMKDANAYLQEKSAFFSTM 138
+K+ VMK EK F+ T+
Sbjct: 139 AKLSVMKYCEYVSAEKGVFYKTL 161
>ref|NP_223908.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 182
Score = 26.2 bits (56), Expect = 0.76
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 7/53 (13%)
Query: 54 TMTNLIGFLLVLASIWVFFLAFGVLLG-------KVLVFSGLGIIDKALGFIF 99
T TN++ + LAS VF AF LL ++ V+ G I+ A G +F
Sbjct: 23 TTTNILYAITALASSMVFISAFFFLLDAEFLGVVQITVYVGAVIVMYAFGMMF 75
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 26.2 bits (56), Expect = 0.76
Identities = 19/53 (35%), Positives = 21/53 (38%), Gaps = 2/53 (3%)
Query: 170 KNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPKANQTPPNPTPSNKE 222
K E KN N KGVE KE AK P PK + T T K+
Sbjct: 146 KQNEKNEKNDAKENGI--KGVEKNKENAKTPPTTHQKPKTHATTNAHTNQKKD 196
>ref|NP_223806.1| putative [Helicobacter pylori J99]
Length = 193
Score = 26.2 bits (56), Expect = 0.76
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
Query: 63 LVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFL---VLSFILYAL 115
L LAS+WV A ++ ++ ++ A+GF LK FL V S L+AL
Sbjct: 87 LALASLWVKRYALLMIFVNKYLYGIKSVVPLAIGFSKYPLKKFLWLNVFSSFLWAL 142
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 26.2 bits (56), Expect = 0.76
Identities = 18/79 (22%), Positives = 34/79 (42%), Gaps = 3/79 (3%)
Query: 149 DGVKHVEQ---NLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNML 205
D +K +++ N D E DE+ E N + + + + +E+L+ K K + M+
Sbjct: 312 DTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTENLKRIIETLRSKIKANQQKMI 371
Query: 206 DPKANQTPPNPTPSNKEPL 224
D + SNK +
Sbjct: 372 DKSKEMSRNFKLDSNKNEI 390
Score = 23.1 bits (48), Expect = 6.4
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 152 KHVEQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPK 208
K + K +++E + + E N E + V+ L+ + K+L KNM+ K
Sbjct: 427 KFLINEFKSDIQEYNKKYCGLEKGINNLEKEISENQEKVKKLENEIKELEKNMVSIK 483
>ref|NP_223527.1| catalase [Helicobacter pylori J99]
Length = 505
Score = 25.8 bits (55), Expect = 0.99
Identities = 17/55 (30%), Positives = 25/55 (44%)
Query: 155 EQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPKA 209
++ L D + V +KE +K E F KA K E +K+ + K M D A
Sbjct: 441 KERLYDTIGGSLAHVTHKEIVDKQLEHFKKADPKYAEGVKKALEKHQKMMKDMHA 495
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 25.8 bits (55), Expect = 0.99
Identities = 23/102 (22%), Positives = 44/102 (42%), Gaps = 9/102 (8%)
Query: 110 FILYALSKMEVMKDANAYLQEKSAFF---STMKSVASKIMRLDGV----KHVEQNLKDNL 162
F + K + + ++L+E SA M+ + K+ LD + + K +
Sbjct: 138 FFIIGKGKQKQLAKIYSHLKELSASEIKPQDMEDILKKLEELDKIFKTTDFTKFTPKTEI 197
Query: 163 EEMSDEVKNKESFNKN-KESFNKAMDKGVESLKEKAKDLPKN 203
+++ E+ K N+N K FN+ + +E E KD +N
Sbjct: 198 KDIIKEIDEKYPINENFKRQFNE-FESNIEKHDEIKKDFERN 238
Score = 24.6 bits (52), Expect = 2.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 155 EQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNM 204
E N++ + E D +NKES + E+ K E + K DL KN+
Sbjct: 222 ESNIEKHDEIKKDFERNKESLIREIENHCKNECNSEEEPEYKINDLLKNI 271
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 25.8 bits (55), Expect = 0.99
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 115 LSKMEVMKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLE------EMSDE 168
LS D N ++ F + K V K++ L G + QN K L+ M +
Sbjct: 91 LSTQIAQNDINYKVKHAREFIESNKHVKFKVV-LKGRE--SQNSKAGLDVLFRVQTMMQD 147
Query: 169 VKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPKANQTPPN 215
+ N E K + F M KAK+ PKN K N P N
Sbjct: 148 LANPEKEPKTEGRFVSWM------FVPKAKEAPKNEKKTKENNPPFN 188
>ref|NP_222742.1| putative [Helicobacter pylori J99]
Length = 523
Score = 25.8 bits (55), Expect = 0.99
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 30 YLASRYSVAVGNLFSEHLYDLRNETMTNLIGFLLVLASIWVFFLAFGVLLGKVLVFSGLG 89
Y S Y V + + ++ N ++GFL V ++VF + FGVL G V+ L
Sbjct: 90 YFISAYKVFLNKSM---MGNVLNTNTHEVLGFLSV--KLFVFIVVFGVLPGYVIYKIPLK 144
Query: 90 IIDKALGFIFSCLKTFLVLSFILYALSKM 118
K F+ L L FI A + M
Sbjct: 145 NSSKKAPFL-----AILALVFIFIASAFM 168
>ref|NP_223826.1| putative NA+/H+ ANTIPORTER [Helicobacter pylori J99]
Length = 383
Score = 25.4 bits (54), Expect = 1.3
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 4 VAFGIRGFYHGFVSEVAGTLGIVLGVYLASRYSVAVGNLFSEHLYDLRNETMTNLIGFLL 63
V F + F+ V + +VLG +LA V + F H +L ++ GF +
Sbjct: 216 VRFSLMLFFSLVAIVVWLKIEMVLGAFLAG----LVVSTFFPHKSELIHKLNDVGFGFFV 271
Query: 64 VLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILY 113
L FF+ G L LVF +I + + + + L L+ S +L+
Sbjct: 272 PL-----FFIHVGSTLDLKLVFLNPHLILQGILIVIAMLSLHLITSTLLW 316
>ref|NP_223653.1| putative [Helicobacter pylori J99]
Length = 177
Score = 25.4 bits (54), Expect = 1.3
Identities = 14/51 (27%), Positives = 25/51 (48%)
Query: 116 SKMEVMKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMS 166
S +E +KD QEK ++ + S + +K + +N K+NL+ S
Sbjct: 120 SSLEKLKDNYTSTQEKENIMDKLEQIDSIKPFNERLKGILENAKENLQAQS 170
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 25.4 bits (54), Expect = 1.3
Identities = 16/81 (19%), Positives = 38/81 (46%)
Query: 104 TFLVLSFILYALSKMEVMKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLE 163
T L LS +L ++++ A +E++ FF + SK + ++++EQ + +
Sbjct: 81 TSLALSNLLCEKFNLDILLTIEAMDKERALFFIRERKKRSKDISYQNIEYLEQMVSTDRA 140
Query: 164 EMSDEVKNKESFNKNKESFNK 184
++ + F +K+ +K
Sbjct: 141 QIQKVSLSIMVFANSKKELDK 161
>ref|NP_223425.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 358
Score = 25.4 bits (54), Expect = 1.3
Identities = 28/95 (29%), Positives = 40/95 (41%), Gaps = 5/95 (5%)
Query: 39 VGNLFSEHLYDLRNETMTNLIGFLLVLASIWVFFLAFGVLLGKVLV-FSG--LGIIDKAL 95
V NLFS L + + ++ L FL ++F L G L L+ G L KAL
Sbjct: 130 VKNLFS--LKKILDGSLITLKVFLAFFLGFFIFSLFLGELNHAALLNLQGQLLWFKSKAL 187
Query: 96 GFIFSCLKTFLVLSFILYALSKMEVMKDANAYLQE 130
I S L F VL+F+ + + + QE
Sbjct: 188 WLISSLLFLFFVLAFVDLIIKRRQYTNSLKMTKQE 222
>ref|NP_223204.1| cag island protein [Helicobacter pylori J99]
Length = 306
Score = 25.4 bits (54), Expect = 1.3
Identities = 17/66 (25%), Positives = 28/66 (41%), Gaps = 6/66 (9%)
Query: 163 EEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPK------NMLDPKANQTPPNP 216
E++ ++ E KN E+F K + V+ K + L + N L+ N
Sbjct: 71 EKLRNDRARVEQIQKNIEAFEKKNNSSVQKKAAKHRGLQELNEINANPLNDNPNGNSSTE 130
Query: 217 TPSNKE 222
T SNK+
Sbjct: 131 TKSNKD 136
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 25.4 bits (54), Expect = 1.3
Identities = 19/72 (26%), Positives = 34/72 (46%), Gaps = 3/72 (4%)
Query: 155 EQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKG--VESLKEKAKDLPKN-MLDPKANQ 211
++NLK+N + + N+ESF +N ++ E L + + P + + PK N+
Sbjct: 194 KENLKENPIDENHNTPNEESFLAIPTPYNTTLNNSEPQEGLVQISPHPPTHYTIYPKRNR 253
Query: 212 TPPNPTPSNKEP 223
P+ KEP
Sbjct: 254 FDDLTNPTLKEP 265
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 25.0 bits (53), Expect = 1.7
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 172 KESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPKANQTPPNPTPSN 220
+ES N K+ + ++ E +LPKN PK PN +N
Sbjct: 227 QESPNSVPSDLKKSCNVRERNVAEIVDNLPKNQYTPKKKNFSPNEPFNN 275
>ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99]
Length = 852
Score = 25.0 bits (53), Expect = 1.7
Identities = 14/58 (24%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 136 STMKSVASKIMRLDG---VKHVEQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGV 190
S +S A+ ++RL+ +++++ N+K E ++ ++KE+ K +++ +DK V
Sbjct: 590 SAERSAAACVVRLNKEPMIEYLKSNIKLIDEMIASGYEDKETLKKRRDAMQAWVDKPV 647
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 24.6 bits (52), Expect = 2.2
Identities = 11/27 (40%), Positives = 18/27 (65%), Gaps = 2/27 (7%)
Query: 45 EHLYDL--RNETMTNLIGFLLVLASIW 69
E + DL +N+ +T L+ L+ LAS+W
Sbjct: 3 EKIIDLSVKNKLLTTLVTLLIFLASLW 29
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 24.3 bits (51), Expect = 2.9
Identities = 15/61 (24%), Positives = 27/61 (43%)
Query: 145 IMRLDGVKHVEQNLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNM 204
IMR +K++E N E K+K+ N+ E ++ D V + K+ + M
Sbjct: 563 IMRKAALKYLEDNPHKKGRTKKSEDKDKKGGNEENEKRGESKDFCVSITPDNLKEYLERM 622
Query: 205 L 205
+
Sbjct: 623 V 623
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 24.3 bits (51), Expect = 2.9
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 151 VKHVEQNLKDNLEEMSDEVKNKESFN--------KNKESFNKAMDKGVESLKEKAKDLPK 202
++ E+ L+ +L ++ + FN K ++ +A+ + + + L +
Sbjct: 499 IQQDEKALEKDLAQIKQLANSTTGFNEQAFTQAQKQEQQDEQALQNDENAFNTEQEGLEQ 558
Query: 203 NMLDPKANQTPPNPTPS 219
+ + K PNPTPS
Sbjct: 559 AIANAKHANPTPNPTPS 575
>ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter pylori J99]
Length = 226
Score = 24.3 bits (51), Expect = 2.9
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 58 LIGFLLVLASIWVFFLAFGVLLGKVLVFSGL-GIIDKALGFIFSCLKTFL 106
+ GF +VL ++ +FF++ G +V GL + + + I S K +
Sbjct: 19 ITGFFVVLTAVLMFFISLGASRKMQMVPMGLQNVYESIISAILSVAKDII 68
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 24.3 bits (51), Expect = 2.9
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 111 ILYALSKMEVMKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVK 170
++ ALS + A L + + F + + + +KH+ + LK NL+E +
Sbjct: 126 LIDALSLGGIFNLARRLLDKNNDFIYQQRILTESKEIEEALKHLHEYLKVNLQEKLAGFR 185
Query: 171 NKESFNKN-KESFN-KAMD-KGVESLKEKA 197
+ +N+N K+S KA+ GV++L + A
Sbjct: 186 DFVHYNENAKDSLPLKALFLSGVDALSKDA 215
>ref|NP_223666.1| putative [Helicobacter pylori J99]
Length = 420
Score = 23.9 bits (50), Expect = 3.8
Identities = 16/54 (29%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 61 FLLVLASIWVF--FLAFGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFIL 112
FLL +VF +L + L V+ LG + GF+ S +K + L+F +
Sbjct: 227 FLLFKVFCYVFMTYLEKIIYLSLVIFMLLLGFFQQTRGFLVSYVKKIISLTFYM 280
>ref|NP_223255.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99]
Length = 375
Score = 23.9 bits (50), Expect = 3.8
Identities = 19/77 (24%), Positives = 38/77 (48%), Gaps = 7/77 (9%)
Query: 106 LVLSFILYALSKMEVMKDANAYLQEKSAFF--STMKSVASKIMRLDGVKH-----VEQNL 158
+++++ +L+ E +KD N ++K FF T+ +K ++ G K+ +E N
Sbjct: 278 VIIAYGSVSLAVKEALKDYNKESKQKVGFFRPKTLWPSPAKRLKEIGDKYEKILVIELNK 337
Query: 159 KDNLEEMSDEVKNKESF 175
LEE+ ++ K F
Sbjct: 338 GQYLEEIERVMQRKVHF 354
>ref|NP_224212.1| putative [Helicobacter pylori J99]
Length = 253
Score = 23.5 bits (49), Expect = 4.9
Identities = 16/75 (21%), Positives = 36/75 (47%), Gaps = 4/75 (5%)
Query: 111 ILYALSKMEVMKDANAYLQEKSAFFSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVK 170
+LY +V +K+ +++ SKI+ + +E+ + ++EM DE+
Sbjct: 82 VLYKEILCDVCDKLKVNYNKKTETTLIEQNMLSKILE----RSLEEMDDEEVKEMCDELS 137
Query: 171 NKESFNKNKESFNKA 185
K + N N+++ + A
Sbjct: 138 IKNTDNLNRQALSAA 152
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 23.5 bits (49), Expect = 4.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 58 LIGFLLVLASIWVFFLAFGVLLGKVLVFSGLGIIDKALGF 97
L G LL + S FLA LGK L +G+ +GF
Sbjct: 269 LSGVLLFIVSYLCLFLADSSFLGKYLWLFIVGVAFFFIGF 308
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.5 bits (49), Expect = 4.9
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 137 TMKSVASKIMRLDGVKHVEQNLKDN------LEEMSDEVKNKESFNKNKESFNKAMDKGV 190
T +S+ + I L K + ++ KDN + +S VK K + +A+++GV
Sbjct: 1085 TTQSLETTIKELLEQKLIYKDHKDNGGYILANDYLSGNVKRK------LKEVKEAINQGV 1138
Query: 191 ESLKEKAKDL 200
E L+ KDL
Sbjct: 1139 EGLEANVKDL 1148
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 23.5 bits (49), Expect = 4.9
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 98 IFSCLKTFLVLSFILYALSKMEVMK------DANAYLQEKSAFFSTMKSVASKIMRLDGV 151
I S ++ L I LS E K +N L K+ F+ + A D V
Sbjct: 552 ITSVVRQDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKNTGNYDEV 611
Query: 152 KHVEQNLKDNLEEMS----DEVKNKESFNKNK 179
K +++L+ +L++ D KN ES + NK
Sbjct: 612 KQAQKDLEKSLKKRERLEKDVAKNLESKSGNK 643
>ref|NP_223712.1| putative [Helicobacter pylori J99]
Length = 78
Score = 23.1 bits (48), Expect = 6.4
Identities = 9/28 (32%), Positives = 14/28 (49%)
Query: 30 YLASRYSVAVGNLFSEHLYDLRNETMTN 57
YL RY +++ N FS+ + E N
Sbjct: 12 YLGKRYKISLNNTFSDEMKRTLKERFHN 39
>ref|NP_223202.1| cag island protein [Helicobacter pylori J99]
Length = 114
Score = 23.1 bits (48), Expect = 6.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 170 KNKESFNKNKESFNKAMDK 188
K K++F + K SFNK +DK
Sbjct: 7 KLKQNFLQFKHSFNKHLDK 25
>ref|NP_223167.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 23.1 bits (48), Expect = 6.4
Identities = 27/125 (21%), Positives = 54/125 (42%), Gaps = 10/125 (8%)
Query: 16 VSEVAGTLGIVLGVYLA-SRYSVAVGNLFSEHLYDLRNETMTNLIGFLLVLASIWVFFLA 74
+ +V +L I LG+ + + + NL ++ + + + +L+ L+ I+ F
Sbjct: 215 LGQVFFSLSIGLGINITYAAVTDKTQNLLKSTIWVVLSGILISLVAGLM----IFTFVFE 270
Query: 75 FGVLLGKVLVFSGLGIIDKALGFIFSCLKTFLVLSFILYALSKMEVMKDANAYLQEKSAF 134
+G + + G G+I +L +F + VL IL+ L+ + L E S
Sbjct: 271 YGANVSQ-----GTGLIFTSLPVVFGQMGAIGVLVSILFLLALAFAGITSTVALLEPSVM 325
Query: 135 FSTMK 139
+ T K
Sbjct: 326 YLTEK 330
>ref|NP_223068.1| putative [Helicobacter pylori J99]
Length = 173
Score = 23.1 bits (48), Expect = 6.4
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 157 NLKDNLEEMSDEVKNKESFNKNKESFNKAMDKGVESLKEKAKDLPKNMLDPKANQTPPNP 216
N+ N E S V N + +N F +++ + +KE L +++ +PKA P
Sbjct: 99 NIAINDEVFSMIVDNPLNLLENVGGFQAYLEEKLNEIKELLGYLSESLSNPKAFM--PKQ 156
Query: 217 TPSNK 221
+ SNK
Sbjct: 157 SFSNK 161
>ref|NP_222873.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 225
Score = 23.1 bits (48), Expect = 6.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 173 ESFNKNKESFNKAMDKGVESLKEKAKDLPK 202
ES + N ES NK++D + L+ K + PK
Sbjct: 179 ESESINPESSNKSIDVIIGRLRSKIEKNPK 208
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 22.7 bits (47), Expect = 8.4
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 135 FSTMKSVASKIMRLDGVKHVEQNLKDNLEEMSDEVKNKESF 175
F + V K R D V +++ DN + + + NKE F
Sbjct: 622 FEKLSKVLGKYTRQD----VSRSIDDNTGKTNTSISNKERF 658
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.137 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,638
Number of Sequences: 1491
Number of extensions: 12677
Number of successful extensions: 114
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 69
length of query: 224
length of database: 494,079
effective HSP length: 74
effective length of query: 150
effective length of database: 383,745
effective search space: 57561750
effective search space used: 57561750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)