BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644813|ref|NP_206983.1| hypothetical protein
[Helicobacter pylori 26695]
(180 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222893.1| putative [Helicobacter pylori J99] 371 e-105
ref|NP_223803.1| putative cAMP-induced cell filamentation p... 24 2.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 2.7
ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 24 2.7
ref|NP_222756.1| DNA transformation competancy [Helicobacte... 24 2.7
ref|NP_223971.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223491.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBU... 23 4.7
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 6.1
ref|NP_223270.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 22 7.9
>ref|NP_222893.1| putative [Helicobacter pylori J99]
Length = 180
Score = 371 bits (952), Expect = e-105
Identities = 176/180 (97%), Positives = 180/180 (99%)
Query: 1 MTEMELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREIEI 60
MTEMELKLIKIDTSHYFEKKPGLGER+DYAGRC+YNKFQRVNAMLTSSLIQKHLKREIEI
Sbjct: 1 MTEMELKLIKIDTSHYFEKKPGLGERMDYAGRCYYNKFQRVNAMLTSSLIQKHLKREIEI 60
Query: 61 AHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKG 120
AHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKG
Sbjct: 61 AHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKG 120
Query: 121 HTELGEGERLVKTLSMKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKERGSSWAKHL 180
HTELGEGERL+KTLSMKLAQGLPKEW+VFPSNEWPKEFNILALPYEVFAKERGSSWAKHL
Sbjct: 121 HTELGEGERLIKTLSMKLAQGLPKEWRVFPSNEWPKEFNILALPYEVFAKERGSSWAKHL 180
>ref|NP_223803.1| putative cAMP-induced cell filamentation protein [Helicobacter
pylori J99]
Length = 175
Score = 24.3 bits (51), Expect = 2.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 19 KKPGLGERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREI 58
KK L +R+D A K VN + +L++KHL I
Sbjct: 117 KKIALWDRIDKAAYLSAIKRSPVNDLEIKTLLKKHLSSNI 156
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.9 bits (50), Expect = 2.7
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 41 VNAMLTSSLIQK-HLKREIEIAHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGF 99
+N +SLI + +L +++ N+ + + +++V Y NP +KA L+ + +
Sbjct: 647 INIKCANSLISRFNLNDDLKKIPNIKKKIQEYKDLVAQYKDPNPLYPLNKADLINKIQDL 706
Query: 100 MNFTAYNTKTP 110
N + K P
Sbjct: 707 KNTFSLTLKDP 717
>ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 341
Score = 23.9 bits (50), Expect = 2.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 115 LYVHKGHTELGEGERLVKTLSMKLA 139
LY +K +T + +G+RL+ S +LA
Sbjct: 84 LYANKTYTPIKKGDRLLSVYSPELA 108
>ref|NP_222756.1| DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 23.9 bits (50), Expect = 2.7
Identities = 10/35 (28%), Positives = 19/35 (53%)
Query: 35 YNKFQRVNAMLTSSLIQKHLKREIEIAHNLILRND 69
+ +F+ + S +Q HL+RE+ I + I + D
Sbjct: 146 WQRFEDLIKAQNSIYVQSHLEREVHIVNIAIYQQD 180
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 23.5 bits (49), Expect = 3.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 34 FYNKFQRVNAMLTSSLIQKHLKREIEIAHNLILRNDKVENIVFDYNG 80
F N+ +NA + + L Q+ K+ ++ L ++NI D +G
Sbjct: 320 FLNETMALNAQVLALLAQQQTKKPFNVSDGLSGGKALIKNIRLDPHG 366
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 23.5 bits (49), Expect = 3.6
Identities = 14/42 (33%), Positives = 21/42 (49%)
Query: 133 TLSMKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKERGS 174
+L M + L +K + N KEFN L P + AK++ S
Sbjct: 417 SLIMNRPKALHFSYKRYLINTLRKEFNFLGTPLILNAKDKKS 458
>ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBUNIT) [Helicobacter pylori
J99]
Length = 207
Score = 23.1 bits (48), Expect = 4.7
Identities = 13/43 (30%), Positives = 19/43 (43%)
Query: 25 ERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREIEIAHNLILR 67
E+ G C+ K + N +LT L E +I NL+ R
Sbjct: 87 EKFFAGGLCYPYKVKDTNELLTKFLYFYLKTNETQIMENLVFR 129
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 22.7 bits (47), Expect = 6.1
Identities = 13/40 (32%), Positives = 20/40 (49%)
Query: 1 MTEMELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQR 40
+ E E+K IK F+KK L E+ + FY + +R
Sbjct: 145 LVENEVKNIKETQQIIFKKKEELVEKTEPKIYSFYERIRR 184
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 22.3 bits (46), Expect = 7.9
Identities = 18/66 (27%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
Query: 27 VDYAGRCFYNKFQRVNAML---TSSLIQKHLKREIEIAHNLILRNDKVENIVFDYN-GRN 82
+D A F N ++ +A L T+ L + + E+A+NL L N +V+ + +N G
Sbjct: 412 LDAANLSFANIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHK 471
Query: 83 PERFYH 88
+ + H
Sbjct: 472 IDDYVH 477
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 22.3 bits (46), Expect = 7.9
Identities = 13/46 (28%), Positives = 24/46 (51%), Gaps = 4/46 (8%)
Query: 64 LILRNDKVENIVFDYNGRNPERFYHKAQLLLRE----EGFMNFTAY 105
L +++ +E + F Y + + ++H A+L L E +NF AY
Sbjct: 365 LSIQSILIEALRFAYPKASQQEWHHLAELCLEEVCLNPELLNFYAY 410
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,645
Number of Sequences: 1491
Number of extensions: 8675
Number of successful extensions: 28
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 11
length of query: 180
length of database: 494,079
effective HSP length: 72
effective length of query: 108
effective length of database: 386,727
effective search space: 41766516
effective search space used: 41766516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)