BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644814|ref|NP_206984.1| hypothetical protein
[Helicobacter pylori 26695]
(267 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222894.1| putative [Helicobacter pylori J99] 451 e-128
ref|NP_223714.1| putative [Helicobacter pylori J99] 82 2e-17
ref|NP_223025.1| putative [Helicobacter pylori J99] 45 3e-06
ref|NP_223773.1| putative [Helicobacter pylori J99] 39 1e-04
ref|NP_223176.1| putative [Helicobacter pylori J99] 39 2e-04
ref|NP_222831.1| putative [Helicobacter pylori J99] 38 2e-04
ref|NP_222772.1| putative [Helicobacter pylori J99] 37 4e-04
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 36 0.001
ref|NP_223645.1| putative [Helicobacter pylori J99] 36 0.001
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 36 0.001
ref|NP_223830.1| putative [Helicobacter pylori J99] 35 0.002
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 33 0.006
ref|NP_223641.1| putative [Helicobacter pylori J99] 33 0.006
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 33 0.010
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 31 0.030
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 31 0.030
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 31 0.039
ref|NP_222827.1| putative [Helicobacter pylori J99] 31 0.039
ref|NP_223625.1| putative [Helicobacter pylori J99] 30 0.051
ref|NP_223219.1| putative [Helicobacter pylori J99] 30 0.066
ref|NP_224062.1| putative [Helicobacter pylori J99] 29 0.11
ref|NP_224041.1| putative [Helicobacter pylori J99] 28 0.19
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 28 0.19
ref|NP_223039.1| putative [Helicobacter pylori J99] 28 0.19
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 28 0.25
ref|NP_223642.1| putative [Helicobacter pylori J99] 28 0.25
ref|NP_222774.1| putative [Helicobacter pylori J99] 28 0.25
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 28 0.33
ref|NP_223872.1| putative [Helicobacter pylori J99] 27 0.43
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 27 0.43
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 27 0.43
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 27 0.56
ref|NP_222962.1| putative [Helicobacter pylori J99] 27 0.56
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 26 1.2
ref|NP_222755.1| putative [Helicobacter pylori J99] 26 1.2
ref|NP_223901.1| NADH oxidoreductase I [Helicobacter pylori... 25 1.6
ref|NP_223270.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 25 1.6
ref|NP_223924.1| putative [Helicobacter pylori J99] 25 2.1
ref|NP_222840.1| putative [Helicobacter pylori J99] 25 2.1
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 25 2.1
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 25 2.8
ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter... 25 2.8
ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicoba... 24 3.6
ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 24 3.6
ref|NP_223038.1| putative [Helicobacter pylori J99] 24 3.6
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 24 4.7
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 24 4.7
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 24 4.7
ref|NP_223490.1| putative [Helicobacter pylori J99] 24 4.7
ref|NP_223180.1| putative [Helicobacter pylori J99] 24 4.7
ref|NP_222796.1| putative [Helicobacter pylori J99] 24 4.7
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 23 6.2
ref|NP_222874.1| putative [Helicobacter pylori J99] 23 6.2
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 8.1
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 23 8.1
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 23 8.1
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 451 bits (1159), Expect = e-128
Identities = 234/269 (86%), Positives = 242/269 (88%), Gaps = 3/269 (1%)
Query: 1 MSEKERLNEVILEEENNGSGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSG 60
MSEKERLNEVILEEENNGSGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSG
Sbjct: 1 MSEKERLNEVILEEENNGSGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSG 60
Query: 61 MQKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKT 120
MQKIGNTKDEKKDDEFESLN+D KQEDKLDKV DN+KKQE++ +MP QTDQ Q EMKT
Sbjct: 61 MQKIGNTKDEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESEN-SMPIQTDQAQMEMKT 119
Query: 121 TEETQEAQKGLKVVEHT--STQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELK 178
TEE QE+QK LK VE STQKESQAVAKKE HKKPK PKDKEAHKDK KHA KE K
Sbjct: 120 TEEKQESQKELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHAAKEPK 179
Query: 179 VKKEAHKEVPKKANSKTTLTKGHYLQVGVFAHTPNKAFLQAFNQFPHKIEDRGSTKRYLI 238
VKKEA KEV KKANSKT LTKGHYLQVGVFAHTPNKAFLQ FNQFPHKIEDRG+TKRYLI
Sbjct: 180 VKKEARKEVSKKANSKTNLTKGHYLQVGVFAHTPNKAFLQEFNQFPHKIEDRGATKRYLI 239
Query: 239 GPYKNKQEALMHADEVSKKMTKPVVIEAR 267
GPYK+KQEALMHADEVSKKMTKPVVIE R
Sbjct: 240 GPYKSKQEALMHADEVSKKMTKPVVIEVR 268
>ref|NP_223714.1| putative [Helicobacter pylori J99]
Length = 248
Score = 81.6 bits (200), Expect = 2e-17
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 157 KATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKKANSKTTLT-----KGHYLQVGVFAHT 211
K K K+AH + + K +KKE K KK +K +L KG+YLQ+G F ++
Sbjct: 134 KVKRKIKKAH-EHEMALNKSQPLKKEPPKSENKKGLTKPSLKDAKIPKGYYLQIGAFLNS 192
Query: 212 PNKAFLQAFNQFPHKIEDRGSTKRYLIGPYKNKQEALMHADEVSKKM-TKPVVIE 265
P+K FLQ FPH++E++ S YLIGPYK K+EAL + +K KP ++E
Sbjct: 193 PSKDFLQTLKTFPHQMEEKDSLTHYLIGPYKTKEEALKQLENAAKSFKNKPALVE 247
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 44.7 bits (104), Expect = 3e-06
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 51 KETFLQTDSGMQKIGNTKDEKKDDEFE-SLNLDPSKQE-----DKLDKVAD--NVKKQE- 101
K+ FL T+ M K+ K E E S NLDP+++ D+L+ + D + K+E
Sbjct: 98 KKPFLPTE--MLKVLQKKLGSNASELEPSQNLDPTQEILETNWDELENLGDLEALAKEEP 155
Query: 102 -NDAFNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATP 160
N+ +PT +Q K + + ++ +K ++ +K+ Q VA+ +KPK
Sbjct: 156 NNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDE 215
Query: 161 KDKEAHKDKDKHAVKELKVKKEAHKEVPKK 190
KD+ KEL+ ++E E PK+
Sbjct: 216 TQGSVEPPKDEEVSKELETQEEL--ETPKE 243
Score = 42.7 bits (99), Expect = 1e-05
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 11/143 (7%)
Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDEFESLNLDPSKQE-DKLDKVADNVKKQENDAFNMP 108
PKE + + ++ K+EK++ +S PS QE + + ++ +++ ND N
Sbjct: 241 PKEETQEQEPIKEETQEIKEEKQEKTQDS----PSAQELEAMQELVKEIQENSNDQENKK 296
Query: 109 -TQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHK 167
TQ Q TE ETQE L++ + TQ+ ++ + + ++ TP++KE +
Sbjct: 297 ETQETQENTETPQDIETQE----LEIPKEEETQEVAEKTQVQGLEKEEIAETPQEKEIQE 352
Query: 168 DKDKHAVK-ELKVKKEAHKEVPK 189
+D+ + E + +K E PK
Sbjct: 353 TQDETPQELEAQDEKLQENETPK 375
Score = 36.2 bits (82), Expect = 0.001
Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Query: 45 STRVAPKETFLQTD-SGMQKIGN----TKDEKKDDEFESLNLDPSKQEDKLDKVADNVKK 99
S + P + L+T+ ++ +G+ K+E ++E L+ + E ++ + VKK
Sbjct: 124 SQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKK 183
Query: 100 QENDAFNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKAT 159
+E + Q Q + E Q+ +K S + KE+ ++ T
Sbjct: 184 EEVKEMQEEVKEKQKQ---EVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELET 240
Query: 160 PKDKEAHKDKDKHAVKELKVKKE 182
PK++ ++ K +E+K +K+
Sbjct: 241 PKEETQEQEPIKEETQEIKEEKQ 263
Score = 32.3 bits (72), Expect = 0.013
Identities = 27/145 (18%), Positives = 64/145 (43%), Gaps = 25/145 (17%)
Query: 50 PKETFLQTDSGMQKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPT 109
PKE Q + +++ ++E K+ + + + +P +E D E P
Sbjct: 173 PKEE-AQEEVKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKD--------DETQGSVEPP 223
Query: 110 QTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDK 169
+ ++ E++T EE + ++ + E ++E+Q + K+++ K +
Sbjct: 224 KDEEVSKELETQEELETPKE--ETQEQEPIKEETQEI--------------KEEKQEKTQ 267
Query: 170 DKHAVKELKVKKEAHKEVPKKANSK 194
D + +EL+ +E KE+ + +N +
Sbjct: 268 DSPSAQELEAMQELVKEIQENSNDQ 292
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 38.9 bits (89), Expect = 1e-04
Identities = 29/101 (28%), Positives = 49/101 (47%), Gaps = 1/101 (0%)
Query: 68 KDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQEA 127
K+E K++ ESL S D +K N +K E + + Q +K +E QE
Sbjct: 79 KEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNEQEEQRRLREQQRLKQNQENQEM 138
Query: 128 QKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKD 168
KGL+ + TQK ++V K + + PK D++A+++
Sbjct: 139 LKGLQQNLNQFTQK-LESVKNKTLDLQIPKQDGVDEKAYQE 178
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 38.5 bits (88), Expect = 2e-04
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 67 TKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMK---TTEE 123
TK KK EFE + ++++K + + K E D N + + E+ E
Sbjct: 312 TKATKKAMEFEEREKEHDERDEK--ETEERRKALEMDKGNEKVNAKENEREINQESANEP 369
Query: 124 TQEAQKGLKVVEHTSTQKESQAVAKKEI---SHKKPKATPKDKEAHKDKDKHAVKELKVK 180
+ E LK E+TS KES AKKE S K+ K K+ E K K + +E + +
Sbjct: 370 SSENNATLKDTENTSVLKES--AAKKEAPKPSSKEEKRRLKE-EKKKAKAEQRAREFEQR 426
Query: 181 KEAHKEVPKK 190
H+E +K
Sbjct: 427 AREHQERDEK 436
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 38.1 bits (87), Expect = 2e-04
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 27/204 (13%)
Query: 68 KDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQEA 127
+ EKK+ + L+ +Q+ + ++ N + E + T + + QE
Sbjct: 130 EQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQER 189
Query: 128 QKGLKVVEHTSTQKESQAVAKKEIS--HKKPKATPKDKEAHKDKDKHAVKELKVK-KEAH 184
QK T++E Q K EI +K K ++ K++ K +KE + +E H
Sbjct: 190 QK---------TEQEKQKANKSEIELEQQKQKTINTQRDLIKEQ-KDFIKETEQNCQEKH 239
Query: 185 KEV-PKKANSKTTLTKGHYLQVGVFAHTPNKAFLQAFNQFP----------HKIEDRGST 233
++ KKA KT +T G +++ TP A NQ P RGS
Sbjct: 240 GQLFIKKARIKTGITTGIAIEIEAECKTPKPA---KTNQTPIQPKHLPNSKQPRSQRGSK 296
Query: 234 KRYLIGPYKNKQEALMHADEVSKK 257
+ LI + + E+L ++ + K
Sbjct: 297 AQELIAYLQKELESLPYSQKAIAK 320
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 37.4 bits (85), Expect = 4e-04
Identities = 31/148 (20%), Positives = 67/148 (44%), Gaps = 21/148 (14%)
Query: 66 NTKDEKKDDEFESLNLDPSK-------------QEDKLDKVADNVKKQENDAFNMPTQTD 112
N KD K F + P++ ++++L++ N+ + + T+
Sbjct: 12 NPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENLTKEKTELQ 71
Query: 113 QTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKH 172
+ E+K +++ E +K + E KE+ ++ ++ +K + T K+K +K++
Sbjct: 72 KQVNELKNSKQVLENEKADWLRE-----KENLTKDRENLTKEKTELTEKNKVLTTEKERL 126
Query: 173 AVKE---LKVKKEAHKEVPKKANSKTTL 197
A ++ K K E+ K+V + NSK L
Sbjct: 127 ATEKENLTKEKTESQKQVNELKNSKQVL 154
Score = 30.0 bits (66), Expect = 0.066
Identities = 20/103 (19%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 63 KIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQ-----TDQTQTE 117
K+ T+ E+ E E+L + ++ + +++++ ++ + EN+ ++ + TD+T
Sbjct: 117 KVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLT 176
Query: 118 MKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATP 160
K T E + + +T+KE A K+ ++ + + P
Sbjct: 177 EKNQRLTTEKTELNNKITGLATEKERLAADKENLTKESRQRKP 219
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 36.2 bits (82), Expect = 0.001
Identities = 28/86 (32%), Positives = 39/86 (44%), Gaps = 7/86 (8%)
Query: 114 TQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHK-----KPKATPKDKEAHKD 168
T + KT E+ + ++ K E ++ + KKE K KPK PK K +
Sbjct: 60 TNSNTKTNAESAKPKEEPK--EKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEP 117
Query: 169 KDKHAVKELKVKKEAHKEVPKKANSK 194
K K K + KKE KE PKK +K
Sbjct: 118 KPKPEPKVEEPKKEEPKEEPKKEEAK 143
Score = 32.3 bits (72), Expect = 0.013
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 155 KPKATPKDKEAHKDKDKHAVKELKVKKEA-HKEVPKKANSK 194
KPK PK +E K++ K K+ + K+EA K VPK+ +K
Sbjct: 118 KPKPEPKVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTK 158
Score = 31.2 bits (69), Expect = 0.030
Identities = 26/95 (27%), Positives = 43/95 (44%), Gaps = 9/95 (9%)
Query: 114 TQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHK-KPKATPKDKEAHKDKDKH 172
T+T ++ + +E ++ K E + + + K + K KPK PK K K K +
Sbjct: 64 TKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEP 123
Query: 173 AVKELKV--------KKEAHKEVPKKANSKTTLTK 199
V+E K K+EA +E +K+ K TK
Sbjct: 124 KVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTK 158
Score = 27.3 bits (59), Expect = 0.43
Identities = 22/97 (22%), Positives = 42/97 (42%), Gaps = 8/97 (8%)
Query: 149 KEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKKANSKTTLTKGHYLQVGVF 208
+E ++PK PK +EA ++ + +V + K+ KE K+ S T ++G + +
Sbjct: 126 EEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKT-SEGATSEAQAY 184
Query: 209 AHTPNKAFLQAF-------NQFPHKIEDRGSTKRYLI 238
+ FL N++P + RG L+
Sbjct: 185 NPGVSNEFLMKIQTAISSKNRYPKMAQIRGIEGEVLV 221
Score = 25.8 bits (55), Expect = 1.2
Identities = 17/63 (26%), Positives = 24/63 (37%)
Query: 127 AQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKE 186
AQ G V + + + K KPK PK+K ++ K K+ K K
Sbjct: 44 AQAGTTKVTMSLASINTNSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKP 103
Query: 187 VPK 189
PK
Sbjct: 104 KPK 106
Score = 25.4 bits (54), Expect = 1.6
Identities = 14/52 (26%), Positives = 23/52 (43%)
Query: 138 STQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPK 189
+T ++ A+ ++PK PK +E K++ K K K K PK
Sbjct: 59 NTNSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPK 110
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 36.2 bits (82), Expect = 0.001
Identities = 34/133 (25%), Positives = 59/133 (43%), Gaps = 9/133 (6%)
Query: 78 SLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQ---TEMKTTEE--TQEAQKGLK 132
S+ L+P+++ D + QE A TQ TQ T+ +TT+E TQE +
Sbjct: 339 SVGLNPTQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQ 398
Query: 133 VVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAH---KEVPK 189
+ TQ+ + K+E + P K K ++ +K K + +A+ E+ K
Sbjct: 399 TTQEQDTQENAPTTIKQE-TPITPAIPLNPKIDFKPSEEVLIKGAKTRYKANIKAIELLK 457
Query: 190 KANSKTTLTKGHY 202
+ +K + KG Y
Sbjct: 458 ELQAKQEILKGDY 470
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 36.2 bits (82), Expect = 0.001
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 61 MQKIGNTKDEKKDDEFESLNLDPSKQE-DKLDKVADNVKKQEN----DAFNMPTQTDQTQ 115
+ K+ + ++ + N+ +K+E ++ K +K+ EN F + + D+T+
Sbjct: 168 LNKLTQSNTNTTNNANSASNVSNAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDETE 227
Query: 116 --TEMKTTEETQEAQKGLKVVEHTST--QKESQAVAKKEISHKKPKATP--KDKEAHK 167
TE TE + Q + E Q++ + KK KPKATP K+ ++HK
Sbjct: 228 NETENSVTESKKPTQSAAAIFEDIKKEWQEKDKQETKKTKKPSKPKATPTAKNNKSHK 285
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 35.0 bits (79), Expect = 0.002
Identities = 43/215 (20%), Positives = 87/215 (40%), Gaps = 29/215 (13%)
Query: 44 KSTRVAPKETFLQTDSGMQKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQEND 103
K A KE D + + E++ E E + KQ+ + +K +KQ+ +
Sbjct: 101 KEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTE 160
Query: 104 AFNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDK 163
T +T ++K +E Q+ T +K+ +K++ +K ++
Sbjct: 161 QEKQKTSNIETNNQIKVEQEQQK----------TEQEKQKTNNTQKDLVNK------AEQ 204
Query: 164 EAHKDKDKHAVKELKVKKEAHKEVPKKANS-KTTLTKGHYLQVGVFAHTPNKAFLQAFNQ 222
++ ++ +K+L +K E+ + + K T T +Q H PN ++
Sbjct: 205 NCQENHNQFFIKKLGIKAGIAIEIEAECKTPKPTKTNQTPIQP---KHLPN-------SK 254
Query: 223 FPHKIEDRGSTKRYLIGPYKNKQEALMHADEVSKK 257
PH RGS + LI + + E+L ++ + K
Sbjct: 255 QPH--SQRGSKAQELIAYLQKELESLPYSQKAIAK 287
Score = 32.7 bits (73), Expect = 0.010
Identities = 39/179 (21%), Positives = 73/179 (39%), Gaps = 12/179 (6%)
Query: 22 KKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSGMQKIGNTKDEKKDDEFESLN- 80
KKVF V I+I+ +A FW++ + + K+ ++D + D K N
Sbjct: 24 KKVFKNVGISIMGIA-----FWEAIKDSIKKQIKKSDWICGNVKTADDYLKTHPNSWFNS 78
Query: 81 -LDPSKQEDKLDKV--ADNVKKQENDAFNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHT 137
+ + L V AD+ K+E + + + E QE QK + + T
Sbjct: 79 AIGVTAITAMLMNVCFADDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKT 138
Query: 138 STQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKKANSKTT 196
+K+ K++ +K K ++E K + ++KV++E K +K + T
Sbjct: 139 EQEKQKTEQEKQKTEQEKQKT---EQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNT 194
Score = 23.9 bits (50), Expect = 4.7
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 27/206 (13%)
Query: 2 SEKERLN--EVILEEENNGSGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFL-QTD 58
++K+ +N E +E +N KK+ + IAI I A PK T QT
Sbjct: 194 TQKDLVNKAEQNCQENHNQFFIKKLGIKAGIAIEIEAECK---------TPKPTKTNQTP 244
Query: 59 SGMQKIGNTKD--EKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQT 116
+ + N+K ++ + + L K+ + L + KQ + F P+ +
Sbjct: 245 IQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVD--FYRPSSIAYLEL 302
Query: 117 EMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKE 176
+ + T+E QK E+ + ++QA E+ KP D +AH + +
Sbjct: 303 DPRDFNATEEWQK-----ENLKIRSKAQA-KMLEMRSLKP-----DPQAHLSTSQSLLLV 351
Query: 177 LKVKKEAHKEVPKKANSKTTLTKGHY 202
K+ + KE+ AN++ + K Y
Sbjct: 352 QKIFADVSKEIKVVANTEKKVEKAGY 377
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 33.5 bits (75), Expect = 0.006
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 15/142 (10%)
Query: 56 QTDSGMQKIGNTKDEKKDDEFESLNLDPSKQEDKLDKV-------ADNVKKQENDAFNMP 108
Q G ++ TK E + E + N + +K+E K +K +DN E D
Sbjct: 132 QNLEGAKETSGTK-EAPEKEVKKENKEKAKEEVKANKTPTTENLTSDNPLADEPDLDYAN 190
Query: 109 TQTDQTQTEM-KTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHK 167
++ + E+ + + QEA K + + ++E QA K+E++ K TPK +
Sbjct: 191 MSAEEVEAEIERLLNKRQEADKERRAQK----KQEDQAKPKQEVA--PAKETPKTETPKT 244
Query: 168 DKDKHAVKELKVKKEAHKEVPK 189
+ K E K K +A E K
Sbjct: 245 ETRKVPKAETKAKAKADTEENK 266
Score = 30.4 bits (67), Expect = 0.051
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 14/171 (8%)
Query: 32 IIILAVLLMVFWKSTRVAPKETFLQTDSGMQKIGNTKDE--KKDDEFESLNLDPSKQEDK 89
+++ ++ LM K+ V ++T T++G + N +E KK S NL+ +K+
Sbjct: 89 VVLRSIDLM---KTLLVTIRDTGSDTNNGKE---NEIEEVVKKLQAITSQNLEGAKETSG 142
Query: 90 LDKVADN-VKKQENDAFNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAK 148
+ + VKK+ + + ++T T T + A + +++ + E
Sbjct: 143 TKEAPEKEVKKENKEKAKEEVKANKTPTTENLTSDNPLADE--PDLDYANMSAEEVEAEI 200
Query: 149 KEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKKANSKTTLTK 199
+ + +K+ +A DKE K + + K + KE PK KT K
Sbjct: 201 ERLLNKRQEA---DKERRAQKKQEDQAKPKQEVAPAKETPKTETPKTETRK 248
>ref|NP_223641.1| putative [Helicobacter pylori J99]
Length = 268
Score = 33.5 bits (75), Expect = 0.006
Identities = 46/166 (27%), Positives = 72/166 (42%), Gaps = 21/166 (12%)
Query: 27 IVAIAIIILAVLLMVFW--------KSTRVA----PKETFL-QTDSGMQ-KIGNTKDEKK 72
IV I +II+ VL+ F K+ V+ P ++L Q G++ KI K
Sbjct: 12 IVKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINQVKP 71
Query: 73 DDEFESLNLDPSKQEDKLDKVADNVKKQEN--DAFNMPTQTDQTQTEMKTTEETQEAQKG 130
+DE +S+N + K + LD V+K N FN Q+ T E +
Sbjct: 72 NDETKSVNENIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPFFNYNTANEDEKNRL 131
Query: 131 LKVVEHTSTQKESQ--AVAKKEISHKKPKATPKDKEAHKDKDKHAV 174
+ + S+QKE+Q K +SH K K + +E K+ K +V
Sbjct: 132 VILASRISSQKETQPPISIKNSVSHIKSK---EKRELEKEWAKPSV 174
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 32.7 bits (73), Expect = 0.010
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 62 QKIGNTKDEKKDDEFESL--NLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMK 119
Q + K+ K D+E + NL Q D L K +++K ++ A T+ ++ + E
Sbjct: 540 QALDCLKNAKTDEERKECLKNLPKDLQSDILAK--ESLKAYKDCASQAKTEAEKKECEKL 597
Query: 120 TTEET-----QEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAV 174
T E +EA++ +K +Q +++A K+ P+A K +EA K +
Sbjct: 598 LTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLD 657
Query: 175 KELKVKKEAHKEVPKK 190
K K EA ++ +K
Sbjct: 658 CVSKAKNEAERKECEK 673
Score = 24.6 bits (52), Expect = 2.8
Identities = 28/195 (14%), Positives = 75/195 (38%), Gaps = 32/195 (16%)
Query: 67 TKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQE 126
T ++ + D + L+ + + + + + + + ++ + PT++ + T +TQE
Sbjct: 140 TSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTESSDNHLDNPTETKTQE 199
Query: 127 AQ------KGLKVVEHTSTQKESQAVAKK-------------------EISHKKPKATPK 161
+ K ++ + ++ Q+ + KK I H K
Sbjct: 200 TKTHFDEDKPEEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFVPLEDK 259
Query: 162 DKEAHKDKDKHAVKELKVKKEAHKEVPKKANSKTTLTKGHYLQVGVFAHTPNKAFLQAFN 221
KD++ + E+++++E ++ + ++ + K + F PN+ N
Sbjct: 260 SSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLF-----FNDDPNRTLYNYLN 314
Query: 222 QFPHKIEDRGSTKRY 236
+IED+ + +
Sbjct: 315 --IAEIEDKNPLRAF 327
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 31.2 bits (69), Expect = 0.030
Identities = 40/154 (25%), Positives = 58/154 (36%), Gaps = 32/154 (20%)
Query: 133 VVEHTSTQKESQAVAKKEISHKKPKATPKD--KEAHKDKDK--------HA--------- 173
++ H T K + A K H+ PK TPK KEA K K+K HA
Sbjct: 120 LIRHQMTPKPPKHHALK---HQTPKPTPKPIKKEAKKAKEKTTKHAHSKHAHSPLNERSA 176
Query: 174 ----------VKELKVKKEAHKEVPKKANSKTTLTKGHYLQVGVFAHTPNKAFLQAFNQF 223
KE+ K+ KE+PKK K + K + + N+ F+ N
Sbjct: 177 KKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEAENESKNQIFIAEKNDT 236
Query: 224 PHKIEDRGSTKRYLIGPYKNKQEALMHADEVSKK 257
K + + K L + K M A+ V +K
Sbjct: 237 WIKTKRKKHKKIVLDAGHGGKDCGAMSANLVCEK 270
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 31.2 bits (69), Expect = 0.030
Identities = 40/161 (24%), Positives = 65/161 (39%), Gaps = 18/161 (11%)
Query: 24 VFLIVAIAIIILAVL-----LMVFWKSTRVAPKETFLQTDSGMQKIGNTKDEKKDDEFES 78
+ L+V I+ +IL L + T+ KE + Q +Q KK+ FE+
Sbjct: 123 IMLMVVISYLILFKLPPKSVFYPYMNKTQSLLKEIYKQC---LQAFSPNFSLKKEG-FEN 178
Query: 79 LNLDPSKQEDKLDKVADNVKKQENDA-FNMPTQTD--QTQTEMKTTEETQEAQKGLKVV- 134
D K+E DK +N+K+ D N P + T TT E Q+GL +
Sbjct: 179 TPSDSQKKETNNDKEKENLKENPIDENHNTPNEESFLAIPTPYNTTLNNSEPQEGLVQIS 238
Query: 135 -----EHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKD 170
+T K ++ + K+PK K++E K+
Sbjct: 239 PHPPTHYTIYPKRNRFDDLTNPTLKEPKQETKEREPTLKKE 279
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 30.8 bits (68), Expect = 0.039
Identities = 20/75 (26%), Positives = 33/75 (43%), Gaps = 2/75 (2%)
Query: 108 PTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHK 167
P T +T EM+ E + K L+ E+ + KE Q KE +PK P +
Sbjct: 503 PKLTTETTAEMQEKETKEAVGKALQTKENDT--KEVQENETKETKEAQPKEAPTALQEFM 560
Query: 168 DKDKHAVKELKVKKE 182
+ ++E+K + E
Sbjct: 561 ANHSNLIEEIKSEFE 575
Score = 25.4 bits (54), Expect = 1.6
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 66 NTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQT---EMKTTE 122
N ++ E + P K + + A+ +K+ +A QT + T + T+
Sbjct: 483 NKSAPEETKEVKEFKFPPLKPKLTTETTAEMQEKETKEAVGKALQTKENDTKEVQENETK 542
Query: 123 ETQEAQ 128
ET+EAQ
Sbjct: 543 ETKEAQ 548
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 30.8 bits (68), Expect = 0.039
Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 32/149 (21%)
Query: 81 LDPSKQEDKL--DKVADNVKKQ------------ENDAFNMPTQTDQTQTEMKTTEETQE 126
+ P K +DK+ +K N K + E D FN P + +
Sbjct: 393 IKPKKDKDKIFIEKYGGNGKVETTLVWKLFLEFFEKDIFNTPYKLEV------------- 439
Query: 127 AQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDK-EAHKDKDKHAVKELKVKKEAHK 185
+ E + K ++ + KE+ K K+ PK K LK+ K+ +
Sbjct: 440 ----INATEGGARIKGTKEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKNLKIAKKKCE 495
Query: 186 EVPKKANSKTTLTKGHYLQVGVFAHTPNK 214
E+ K AN K T + +L+V F K
Sbjct: 496 EIIKYANEKKTQVEEAFLKVAEFLEKVEK 524
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 30.4 bits (67), Expect = 0.051
Identities = 30/121 (24%), Positives = 49/121 (39%), Gaps = 11/121 (9%)
Query: 84 SKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKES 143
S + +L K A++ + MP QT+T+ E++Q +E TQK
Sbjct: 217 SSNDQELQKSANSNLDLDPIGNAMPQTLAQTETQKSQIEKSQ--------IEEAQTQKSQ 268
Query: 144 QAV-AKKEISHKKPKATPKDKEAHKDKDKHA--VKELKVKKEAHKEVPKKANSKTTLTKG 200
+ A E + KKP KDK + + A K K+ K PK+++ K
Sbjct: 269 EMKEAASEQAIKKPLEKEKDKPMYLAQINSADFAPAKKSPKKPAKASPKRSSKNNISVKS 328
Query: 201 H 201
+
Sbjct: 329 N 329
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 30.0 bits (66), Expect = 0.066
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 122 EETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVKK 181
+E +E ++ +K ++ E+ +K++ + TPK +E HK++DK + +K
Sbjct: 176 KEEREQERAIKPDTKNNSFNETNPTEEKKL-----EPTPKLEEKHKEQDKQGKEAIKENP 230
Query: 182 EAHKEVPKK 190
+PK+
Sbjct: 231 NTIYIIPKR 239
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 29.3 bits (64), Expect = 0.11
Identities = 18/68 (26%), Positives = 34/68 (49%), Gaps = 6/68 (8%)
Query: 128 QKGLKVVEHTSTQKESQAVAKKE---ISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAH 184
++ +K + + +K+S + + I+ K PK TPK+ E+H H +K+ K+
Sbjct: 65 EESVKEIHQNAEEKQSLGIKTPQEEIITPKPPKKTPKE-ESHNGDKLHEIKQ--ELKDLF 121
Query: 185 KEVPKKAN 192
+P K N
Sbjct: 122 SHLPYKIN 129
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 28.5 bits (62), Expect = 0.19
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 20/143 (13%)
Query: 93 VADNVKKQENDAFNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEIS 152
+ DN + EN + D + E +K + + QK +++ + +S
Sbjct: 1 MTDNNQNNENHENSSENSKDHHEARAGAFERFTNRKKRFR----ENAQKNAESSNHETLS 56
Query: 153 HKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKK----------ANSKTTLTKGHY 202
H K + P K + K KHA + K + A +E+ N + TL
Sbjct: 57 HHKKEHRPNKKPNNHHKPKHASQ--KTRNYAKEELDNNKVEGVTEILHVNERGTLGFHKE 114
Query: 203 LQVGVFAHTPNKAFLQAFNQFPH 225
L+ GV A+ NK ++ N PH
Sbjct: 115 LKKGVEAN--NKIQVEHLN--PH 133
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 28.5 bits (62), Expect = 0.19
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 77 ESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMK 119
E+L D SK D + Q+N+A N +Q++QT EMK
Sbjct: 19 EALENDGSKPNDLASPKETPKEAQKNEAQNETSQSNQTPKEMK 61
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 28.5 bits (62), Expect = 0.19
Identities = 20/77 (25%), Positives = 36/77 (45%), Gaps = 3/77 (3%)
Query: 113 QTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKH 172
Q + +++ + + +K K E S E K+E SH K + + E HKDK +
Sbjct: 109 QRKRQIRENLKNRSNRKDAKNFEKLSNIAEEIISKKQEESHHKEDS---NDENHKDKLSN 165
Query: 173 AVKELKVKKEAHKEVPK 189
+E+ +KK+ + K
Sbjct: 166 ITEEMILKKQEELKARK 182
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 28.1 bits (61), Expect = 0.25
Identities = 23/94 (24%), Positives = 48/94 (50%), Gaps = 12/94 (12%)
Query: 123 ETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKH--AVKELK-- 178
+TQ+ QK +K H ++ ++ KE + K DK+ +D +++ ++ +K
Sbjct: 203 KTQKLQKEIKSKVHQKMEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKLESIKPF 262
Query: 179 VKKEAHKEVPKK--------ANSKTTLTKGHYLQ 204
+K+EA KE+ K+ A+S + T +Y++
Sbjct: 263 LKEEAFKEIKKQIDRLSRTHADSSDSATLQNYVE 296
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 28.1 bits (61), Expect = 0.25
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 71 KKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQEAQKG 130
K+ EF N D D D + DAF + + Q E+ +E+ G
Sbjct: 71 KEQLEFYQTNRDYDPSLDN-----DENSSELLDAFTSSLENLEKQKINPIREQKRES--G 123
Query: 131 LKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKK 190
+ E E + KK++S + P DK+ ++K +EL+ K++ KE
Sbjct: 124 WQNNEDNKENSELEKAFKKDLSFSQSNPIPLDKKETSKEEKE--EELESKEKEPKETLGF 181
Query: 191 ANS 193
A+S
Sbjct: 182 AHS 184
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 28.1 bits (61), Expect = 0.25
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 75 EFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTD---QTQTEMKTTEETQEAQKGL 131
E ESL++ S E D++ N K + + T+ D + T + + +K
Sbjct: 77 ENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTRLLAARDRLTEEK-- 134
Query: 132 KVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDK--HAVKELKVKKEA 183
+T+KE E++HK + T ++K + DK H V L ++++
Sbjct: 135 ---RELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTNERDS 185
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 27.7 bits (60), Expect = 0.33
Identities = 24/105 (22%), Positives = 46/105 (42%), Gaps = 12/105 (11%)
Query: 105 FNMPTQTDQTQTEMKTTE-ETQEAQKGLKVVEHTSTQKE----SQAVAKKEISHKKPKAT 159
FN+P + T + + E + KGL E K+ ++ + K ++ K A
Sbjct: 542 FNLPNLNNLAITSVVRQDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAE 601
Query: 160 PKD-------KEAHKDKDKHAVKELKVKKEAHKEVPKKANSKTTL 197
K+ K+A KD +K K +++K+ K + K+ +K +
Sbjct: 602 AKNTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKM 646
>ref|NP_223872.1| putative [Helicobacter pylori J99]
Length = 153
Score = 27.3 bits (59), Expect = 0.43
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 45 STRVAPKETFLQTDSGMQKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDA 104
+ + APKE + G +KI + EKKD E+L +P K+E V + + +E +A
Sbjct: 18 NAKSAPKEDLAPIE-GAEKI---EREKKDAPTENLPFNPDKRETYGFLVLELMSDREYEA 73
Query: 105 FNMPTQ-TDQTQTEM 118
F T D++Q +
Sbjct: 74 FLRATAGMDESQKRL 88
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 27.3 bits (59), Expect = 0.43
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 30 IAIIILAVLLMVFWKSTRVAPKETFLQTDSGMQKIGNTKDEKKDDEFESLNLDPSKQEDK 89
I I++ ++L +F+K V E L+ K + E+ D+E ED+
Sbjct: 454 IKYILVFIVLFIFYKKVIVPFSERMLEVVPDEDKEVKSMFEEMDEE-----------EDE 502
Query: 90 LDKVADNVKKQEN 102
L+K+ D KK E+
Sbjct: 503 LNKLGDLRKKVED 515
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 27.3 bits (59), Expect = 0.43
Identities = 14/75 (18%), Positives = 35/75 (46%)
Query: 115 QTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAV 174
Q +M+ E + + ++ +K++ + KE +HK+ + K+ K++
Sbjct: 397 QLKMQMESEPAKLSSVKRSIQRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLE 456
Query: 175 KELKVKKEAHKEVPK 189
+ + +KE KE+ +
Sbjct: 457 AQFENEKEVFKEISR 471
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 26.9 bits (58), Expect = 0.56
Identities = 29/145 (20%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 66 NTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQ 125
N +E + + + + +E ++++ N + N+ + ++ K +ET+
Sbjct: 262 NNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEE-----EREKKLLAEKEKQETE 316
Query: 126 EAQKGLKVVEHTSTQKESQAVAKKEISHK--------KPKATPKDKEAHKDKDKHAVKEL 177
A+ LK +E+ K +A KK+ + K PK + D+ K+K L
Sbjct: 317 LAKYKLKDLENQKKLKALEAELKKKNTKKPRVVEVPIPPKTSDSDETMRVIKEKENYNGL 376
Query: 178 KVKKEAHKEVPKKANSKTTLTKGHY 202
V KE K++ T +++ Y
Sbjct: 377 LVDKET---TIKRSYKGTLISENSY 398
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 26.9 bits (58), Expect = 0.56
Identities = 23/113 (20%), Positives = 52/113 (45%), Gaps = 16/113 (14%)
Query: 72 KDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTE-----ETQE 126
K++ F++L + K+ L + + + ++ A + ++ +T ++MK ++ E
Sbjct: 86 KEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKD--SKIGETYSKMKDSKSALILENLP 143
Query: 127 AQKGLKVVEHTSTQKESQAVAKK---------EISHKKPKATPKDKEAHKDKD 170
Q L+++ Q+ + +AK E+ K PK ++KE+ K D
Sbjct: 144 TQNALEILMALKPQELGKILAKMDPKKAAALTELWQKPPKENKENKESQKTTD 196
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 25.8 bits (55), Expect = 1.2
Identities = 17/63 (26%), Positives = 28/63 (43%), Gaps = 5/63 (7%)
Query: 132 KVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKKA 191
K K ++ AK E + + K KE++K+ + KE K+K+ KE K
Sbjct: 3 KKANEEKAPKRAKQEAKTEATQEN-----KAKESNKENKNNKAKEGKIKEAKTKESKVKE 57
Query: 192 NSK 194
+K
Sbjct: 58 TAK 60
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 25.8 bits (55), Expect = 1.2
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 102 NDAFNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPK 161
N F + +T ++ T Q + ++H +T A IS ++ K
Sbjct: 259 NALFRVQNSLKETY-KLATNLSANLTQSAFQSLQHATTSP-----APSHISSSASQSVSK 312
Query: 162 DKEAHKDKDKHAVKELKVKKEAHKEVPKKANSKTTLTK 199
+KE H K +L VK K+ KK T TK
Sbjct: 313 EKETHSPTFKVETTQLDVKIPNFKQ--KKVKKDTIDTK 348
>ref|NP_223901.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 265
Score = 25.4 bits (54), Expect = 1.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 161 KDKEAHKDKDKHAVKELKVKKEAHKEVP 188
K +E + ++KHA K++ K+ HK P
Sbjct: 231 KGEELKETEEKHAFKKIPFVKDLHKIAP 258
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 25.4 bits (54), Expect = 1.6
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 45 STRVAPKETFLQTDSGMQKIGNTKDEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDA 104
+T+ + L +G + N K++ NL+ S+Q L V + N A
Sbjct: 145 NTQQLQAQVTLNVFNGFSNVNNVKEKSATYRSTVANLEYSRQSVYLQVVQQYYEYFNNLA 204
Query: 105 --FNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEI 151
+ + +Q QT++K T+ KGL ++ + K +++ +I
Sbjct: 205 RMIALQKKLEQIQTDIKRV--TKLYDKGLTTIDDLQSLKAQGNLSEYDI 251
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 25.4 bits (54), Expect = 1.6
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 149 KEISHKKPKATPKDK-EAHKDKDKHAVKELKVKKEAHKEVPKKANSK 194
K I KP+ PK K E K KH + K E K V +K K
Sbjct: 108 KPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEK 154
>ref|NP_223924.1| putative [Helicobacter pylori J99]
Length = 182
Score = 25.0 bits (53), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 2/44 (4%)
Query: 226 KIEDRGSTKRYLIGPYK--NKQEALMHADEVSKKMTKPVVIEAR 267
K D +Y G +K ++ +H D + +TKPVV+EA+
Sbjct: 85 KTADFFDVVKYPKGSFKMTKYEDGKIHGDLTLRGVTKPVVLEAK 128
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 25.0 bits (53), Expect = 2.1
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 90 LDKVADNVKKQENDAFNMPT----QTDQTQTEMKTTEETQEAQK-GLKVVEHTSTQKESQ 144
L K+ + +K AF + ++ E ++ +TQ + L + + +T KE+
Sbjct: 180 LKKMEEQAEKDTKAAFQKRSSGELESHTDSPEFISSSKTQNSSNPDLDPMTNANTLKETA 239
Query: 145 AVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVKKEAHKEVPKKANSK 194
+ + S K+ K K + + K+K + A+++ E K++ + S+
Sbjct: 240 SKEPETSSKKEKKPKKKRRLSKKEKQQQALQQ-----EFEKQISDSSKSE 284
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 25.0 bits (53), Expect = 2.1
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 19/117 (16%)
Query: 20 GTKKVFLIVAIAIIILAVLLMVFWKSTRVAPK--ETFLQTDSGMQKIGNTKDEKKDDEFE 77
G+ + ++VA AI++LA+++ + + E T S K+ N + D
Sbjct: 298 GSVRFVVVVASAIMVLALIIAITLLMRAIVSNRLEVVSSTLSHFFKLLNNQAHSSD---- 353
Query: 78 SLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQEAQKGLKVV 134
+ L ++ D+L ++ + K + QT+ E+ Q Q +KVV
Sbjct: 354 -IKLVEARSNDELGRMQTAINK------------NILQTQKTMQEDRQAVQDTIKVV 397
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 24.6 bits (52), Expect = 2.8
Identities = 15/58 (25%), Positives = 26/58 (43%)
Query: 69 DEKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQE 126
+E++ E S E+K + VA K+EN + +QT+ + + EE E
Sbjct: 461 EEERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKENQTENKTEVKEEKIE 518
>ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter pylori J99]
Length = 608
Score = 24.6 bits (52), Expect = 2.8
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
Query: 112 DQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISH----------KKPKATPK 161
+ T T M T E QKG++ T + Q V K +SH +P A
Sbjct: 363 EDTHTIMDT-----ETQKGMQNYTKTPFLENDQLVYKDAVSHSLNTDILRPVSEPFAANG 417
Query: 162 DKEAHKDKDKHAVKELKVKKEAHKEVPKKANSKTTLTKGHYLQ 204
+ K AV ++ K+ H++V KA + T+ +L+
Sbjct: 418 GLKILKGNLGRAVIKISAIKDEHRKV--KARAIVFKTQSEFLE 458
>ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori J99]
Length = 293
Score = 24.3 bits (51), Expect = 3.6
Identities = 15/54 (27%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
Query: 115 QTEMK--TTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAH 166
Q EMK TE ++ ++ LK + + S+ + + ++HKK KE+H
Sbjct: 52 QKEMKPLNTEIKEQEERSLKTALFKALENFSELLIEVILTHKKNIILLATKESH 105
>ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 24.3 bits (51), Expect = 3.6
Identities = 16/51 (31%), Positives = 25/51 (48%)
Query: 75 EFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQ 125
+F NL+ + D L+K+ D K + F P QT+ E+K E T+
Sbjct: 2 DFLKENLNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTK 52
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 24.3 bits (51), Expect = 3.6
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 16/105 (15%)
Query: 87 EDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQEA----------------QKG 130
+D LD + K N+AF + + K E+ + ++
Sbjct: 8 KDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEEE 67
Query: 131 LKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVK 175
LK++ ++ + + KE+ K+ K T KE + D K
Sbjct: 68 LKIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 23.9 bits (50), Expect = 4.7
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 150 EISHKKPKATPKDKEAHKDKDKHAVKEL-KVKKEAHKEVPKKANSKTTLT 198
E+ K+ + K E +KDK+K+A L KV +A K N++TT++
Sbjct: 23 ELEAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQAAKIF--NYNNQTTIS 70
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 23.9 bits (50), Expect = 4.7
Identities = 16/81 (19%), Positives = 35/81 (42%)
Query: 110 QTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDK 169
Q Q +E K E+ QK + ++ + ++ Q +++IS +KP + +
Sbjct: 281 QKPQKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLEQKISEQKPLDQKLSDQKPQKP 340
Query: 170 DKHAVKELKVKKEAHKEVPKK 190
+ + E K + + PK+
Sbjct: 341 LEQKISEQKPLDQKPQTPPKE 361
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 23.9 bits (50), Expect = 4.7
Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Query: 155 KPKATPKDKEAHKDKDKHAVKELKVKKEAH--KEVPK 189
K K KDKE KDK+ AV E ++ KE+ K
Sbjct: 363 KAKEGIKDKEGIKDKEVRAVDEKNALLDSRRIKEIAK 399
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 23.9 bits (50), Expect = 4.7
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 78 SLNLDPSKQEDKLDKVADNVKKQENDAFN-MPTQTDQTQTEMKTTEETQEAQKGLKV 133
SL+L P + L+K +DNV EN A + M Q + +T++ K + +
Sbjct: 217 SLSLRPFYESFLLEKKSDNVYTIENKALDTMEISKCQMVLKKHSTDKLDSQHKAISI 273
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 23.9 bits (50), Expect = 4.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 155 KPKATPKDKEAHKDKDKHAVKELK 178
KPK K+K+ K+K+++ +K+ K
Sbjct: 557 KPKKEKKEKKEKKEKEEYKLKKEK 580
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 23.9 bits (50), Expect = 4.7
Identities = 27/129 (20%), Positives = 51/129 (38%), Gaps = 12/129 (9%)
Query: 2 SEKERLNEV---ILEEENNGSGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTD 58
S+ + LN + I E + +G+ K+ +V A+ + L + + L+
Sbjct: 320 SQAKELNHLVGQIKEMKQDGASPNKIDSVVNKAMEVRDKL------DNNLNQLDNDLKDQ 373
Query: 59 SGMQKIGNTKDEKKDDEFESLNLDPSKQEDKLD---KVADNVKKQENDAFNMPTQTDQTQ 115
G+ + +K D + L+ + LD K+ + + NDA N P Q Q
Sbjct: 374 KGLSSEQQAQVDKALDSVQQLSHSSDVVGNYLDGSLKIDGDDRDDLNDAINNPMQQPAQQ 433
Query: 116 TEMKTTEET 124
T + + T
Sbjct: 434 TPINNMDNT 442
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 23.5 bits (49), Expect = 6.2
Identities = 17/52 (32%), Positives = 23/52 (43%), Gaps = 3/52 (5%)
Query: 132 KVVEHTSTQKESQAVAKKEISHKKPKA---TPKDKEAHKDKDKHAVKELKVK 180
KV E+ + +A K + + K TP KEA KDK KE+ K
Sbjct: 375 KVPENENKFSLKEADLKHHLEQELKKLDDKTPISKEADKDKKSEEEKEVTPK 426
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 23.5 bits (49), Expect = 6.2
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 47 RVAPKETFLQTDSGMQKIGNTKDEKKDDEFESLNLDPS--KQEDKLDKVADNVKKQENDA 104
R+ K +T + ++K+ T D D F + PS K L ++ K N
Sbjct: 4 RMELKNIISETLNEIEKMAKTID----DGFNTAQKTPSFFKTPSHLQNTPNS--KNANTP 57
Query: 105 FNMPTQTDQTQTEMKTTEETQEAQKGL--KVVEHTSTQ 140
P + +T+ K TEE +EA++ + ++V+ TQ
Sbjct: 58 LE-PKNAAKIETQEKITEEKEEAKEIITEEIVQENPTQ 94
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 23.1 bits (48), Expect = 8.1
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 70 EKKDDEFESLNLDPSKQEDKLDKVADNVKKQENDAFNMPTQTDQTQTEMKTTEETQEAQK 129
EK+ E E L +++E LD+ + +E + + E+K + ++ Q
Sbjct: 647 EKETKELEELENALNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKELKNATDLEDKQI 706
Query: 130 GLKVVEHTSTQKESQAVAKKEISHKKPKATPKDKEAHKDKDKHAVKELKVK 180
+E + ++ + K + KA +K+ + + +K+L +K
Sbjct: 707 LKTALEWLEAKNKALKMKNKAYEELELKAF----HQYKNLEINEIKDLIIK 753
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 23.1 bits (48), Expect = 8.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 229 DRGSTKRYLIGPYKNKQEALMHADEVSKKM 258
D T + GP + E ADEV+K M
Sbjct: 224 DEARTPLIISGPVDRRMENYNKADEVAKSM 253
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 23.1 bits (48), Expect = 8.1
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 98 KKQENDAFNMPTQTDQTQTEMKTTEETQEAQKGLKVVEHTSTQKESQAV 146
K +AF P + +Q ++ Q+ K LK + + +KE + +
Sbjct: 159 KNYYTNAFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETI 207
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.308 0.125 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 293,889
Number of Sequences: 1491
Number of extensions: 14114
Number of successful extensions: 141
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 83
length of query: 267
length of database: 494,079
effective HSP length: 76
effective length of query: 191
effective length of database: 380,763
effective search space: 72725733
effective search space used: 72725733
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)